Guide to the Human Genome
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Name: LOC100128975 Sequence: fasta or formatted (138aa) NCBI GI: 169213603
Description:

PREDICTED: similar to zinc finger protein 626

Not currently referenced in the text

Other entries for this name:
alt mRNA {138aa} PREDICTED: similar to zinc finger protein 626
alt mRNA {138aa} PREDICTED: similar to zinc finger protein 626
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5          9           3
 C cysteine            2.2          3           1
 D aspartate           2.9          4           1
 E glutamate           5.8          8           2
 F phenylalanine       2.9          4           1
 G glycine             7.2         10           1
 H histidine           3.6          5           1
 I isoleucine          3.6          5           1
 K lysine              5.1          7           2
 L leucine            18.8         26           3
 M methionine          2.9          4           1
 N asparagine          3.6          5           1
 P proline             6.5          9           2
 Q glutamine           5.1          7           1
 R arginine            4.3          6           1
 S serine              5.1          7           1
 T threonine           4.3          6           2
 V valine              7.2         10           2
 W tryptophan          0.7          1           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to zinc finger protein 626 [Homo... 
LOC100128975          1.000   PREDICTED: similar to zinc finger protein 626 [Homo...
LOC100128975          1.000   PREDICTED: similar to zinc finger protein 626 [Homo...
ZNF626                0.514   zinc finger protein 626 isoform 2 
ZNF726                0.474   PREDICTED: zinc finger protein 726 
ZNF726                0.474   PREDICTED: zinc finger protein 726 
ZNF726                0.474   PREDICTED: zinc finger protein 726 
ZNF93                 0.443   zinc finger protein 93 
ZNF737                0.427   zinc finger protein 737 
ZNF737                0.427   PREDICTED: zinc finger protein 737 
ZNF737                0.427   PREDICTED: zinc finger protein 737 
ZNF737                0.427   PREDICTED: zinc finger protein 737 
ZNF253                0.423   zinc finger protein 253 
ZNF66                 0.419   PREDICTED: zinc finger protein 66 
ZNF66                 0.419   PREDICTED: zinc finger protein 66 
ZNF66                 0.419   PREDICTED: zinc finger protein 66 
ZNF506                0.415   zinc finger protein 506 isoform 1 
ZNF626                0.407   zinc finger protein 626 isoform 1 
ZNF90                 0.387   zinc finger protein 90 
ZNF486                0.379   zinc finger protein 486 
LOC730110             0.375   PREDICTED: Zinc finger protein ENSP00000351689 [Hom...
LOC730110             0.375   PREDICTED: Zinc finger protein ENSP00000351689 [Hom...
LOC730110             0.375   PREDICTED: Zinc finger protein ENSP00000351689 [Hom...
ZNF257                0.372   zinc finger protein 257 
ZNF273                0.372   zinc finger protein 273 
ZNF681                0.368   zinc finger protein 681 
ZNF92                 0.356   zinc finger protein 92 isoform 2 
ZNF429                0.352   zinc finger protein 429 
ZNF680                0.352   zinc finger protein 680 isoform 1 
ZNF98                 0.348   zinc finger protein 98 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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