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Search of human proteins with 239743184
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743184 PREDICTED: hypothetical protein XP_002342799 [Homo
sapiens]
(193 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749145 PREDICTED: hypothetical protein XP_002346924 [Homo ... 412 e-116
gi|239743184 PREDICTED: hypothetical protein XP_002342799 [Homo ... 412 e-116
gi|239508849 PREDICTED: hypothetical protein [Homo sapiens] 412 e-116
gi|239754586 PREDICTED: hypothetical protein [Homo sapiens] 412 e-116
gi|239754580 PREDICTED: hypothetical protein [Homo sapiens] 410 e-115
gi|239743189 PREDICTED: hypothetical protein XP_002342800 [Homo ... 410 e-115
gi|239508858 PREDICTED: hypothetical protein [Homo sapiens] 410 e-115
gi|239757626 PREDICTED: hypothetical protein XP_002345507 [Homo ... 34 0.088
gi|239746640 PREDICTED: hypothetical protein XP_002344234 [Homo ... 34 0.088
gi|21493022 A kinase (PRKA) anchor protein 12 isoform 1 [Homo sa... 30 0.98
gi|21493024 A kinase (PRKA) anchor protein 12 isoform 2 [Homo sa... 30 0.98
gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I... 30 1.3
gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I... 30 1.3
gi|239753559 PREDICTED: hypothetical protein XP_002345696 [Homo ... 30 1.7
gi|239748103 PREDICTED: hypothetical protein [Homo sapiens] 30 1.7
gi|239741999 PREDICTED: hypothetical protein XP_002342370 [Homo ... 30 1.7
gi|194097398 protein tyrosine phosphatase, receptor type, G prec... 29 2.8
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 28 3.7
gi|191252801 WDFY family member 4 [Homo sapiens] 28 3.7
gi|169217249 PREDICTED: hypothetical protein [Homo sapiens] 28 4.8
gi|98961138 ZXD family zinc finger C isoform 2 [Homo sapiens] 28 4.8
gi|98961133 ZXD family zinc finger C isoform 1 [Homo sapiens] 28 4.8
gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens] 28 6.3
gi|31542731 major facilitator superfamily domain containing 7 [H... 28 6.3
gi|221316699 maltase-glucoamylase [Homo sapiens] 27 8.3
gi|113204609 zinc finger protein 750 [Homo sapiens] 27 8.3
>gi|239749145 PREDICTED: hypothetical protein XP_002346924 [Homo
sapiens]
Length = 193
Score = 412 bits (1060), Expect = e-116
Identities = 193/193 (100%), Positives = 193/193 (100%)
Query: 1 MDKWAQTHRPDGPPATAGPDSWTQAQCHVQTTGRHGTRGQMDVTPQCTGQATELEGRGQG 60
MDKWAQTHRPDGPPATAGPDSWTQAQCHVQTTGRHGTRGQMDVTPQCTGQATELEGRGQG
Sbjct: 1 MDKWAQTHRPDGPPATAGPDSWTQAQCHVQTTGRHGTRGQMDVTPQCTGQATELEGRGQG 60
Query: 61 PFGISALESCETRVVAALEAGVFRVCAAPGPASGLDPIQRSVSQDTGCAHNGSEDPSDQR 120
PFGISALESCETRVVAALEAGVFRVCAAPGPASGLDPIQRSVSQDTGCAHNGSEDPSDQR
Sbjct: 61 PFGISALESCETRVVAALEAGVFRVCAAPGPASGLDPIQRSVSQDTGCAHNGSEDPSDQR 120
Query: 121 VHGLAGVVPSVPAVQGGQEEKQTAWFQPCFSVGAMRPRRLKYCCVFQVEEVILQLTFVLD 180
VHGLAGVVPSVPAVQGGQEEKQTAWFQPCFSVGAMRPRRLKYCCVFQVEEVILQLTFVLD
Sbjct: 121 VHGLAGVVPSVPAVQGGQEEKQTAWFQPCFSVGAMRPRRLKYCCVFQVEEVILQLTFVLD 180
Query: 181 YWTYHTSPDCSYT 193
YWTYHTSPDCSYT
Sbjct: 181 YWTYHTSPDCSYT 193
>gi|239743184 PREDICTED: hypothetical protein XP_002342799 [Homo
sapiens]
Length = 193
Score = 412 bits (1060), Expect = e-116
Identities = 193/193 (100%), Positives = 193/193 (100%)
Query: 1 MDKWAQTHRPDGPPATAGPDSWTQAQCHVQTTGRHGTRGQMDVTPQCTGQATELEGRGQG 60
MDKWAQTHRPDGPPATAGPDSWTQAQCHVQTTGRHGTRGQMDVTPQCTGQATELEGRGQG
Sbjct: 1 MDKWAQTHRPDGPPATAGPDSWTQAQCHVQTTGRHGTRGQMDVTPQCTGQATELEGRGQG 60
Query: 61 PFGISALESCETRVVAALEAGVFRVCAAPGPASGLDPIQRSVSQDTGCAHNGSEDPSDQR 120
PFGISALESCETRVVAALEAGVFRVCAAPGPASGLDPIQRSVSQDTGCAHNGSEDPSDQR
Sbjct: 61 PFGISALESCETRVVAALEAGVFRVCAAPGPASGLDPIQRSVSQDTGCAHNGSEDPSDQR 120
Query: 121 VHGLAGVVPSVPAVQGGQEEKQTAWFQPCFSVGAMRPRRLKYCCVFQVEEVILQLTFVLD 180
VHGLAGVVPSVPAVQGGQEEKQTAWFQPCFSVGAMRPRRLKYCCVFQVEEVILQLTFVLD
Sbjct: 121 VHGLAGVVPSVPAVQGGQEEKQTAWFQPCFSVGAMRPRRLKYCCVFQVEEVILQLTFVLD 180
Query: 181 YWTYHTSPDCSYT 193
YWTYHTSPDCSYT
Sbjct: 181 YWTYHTSPDCSYT 193
>gi|239508849 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 412 bits (1060), Expect = e-116
Identities = 193/193 (100%), Positives = 193/193 (100%)
Query: 1 MDKWAQTHRPDGPPATAGPDSWTQAQCHVQTTGRHGTRGQMDVTPQCTGQATELEGRGQG 60
MDKWAQTHRPDGPPATAGPDSWTQAQCHVQTTGRHGTRGQMDVTPQCTGQATELEGRGQG
Sbjct: 1 MDKWAQTHRPDGPPATAGPDSWTQAQCHVQTTGRHGTRGQMDVTPQCTGQATELEGRGQG 60
Query: 61 PFGISALESCETRVVAALEAGVFRVCAAPGPASGLDPIQRSVSQDTGCAHNGSEDPSDQR 120
PFGISALESCETRVVAALEAGVFRVCAAPGPASGLDPIQRSVSQDTGCAHNGSEDPSDQR
Sbjct: 61 PFGISALESCETRVVAALEAGVFRVCAAPGPASGLDPIQRSVSQDTGCAHNGSEDPSDQR 120
Query: 121 VHGLAGVVPSVPAVQGGQEEKQTAWFQPCFSVGAMRPRRLKYCCVFQVEEVILQLTFVLD 180
VHGLAGVVPSVPAVQGGQEEKQTAWFQPCFSVGAMRPRRLKYCCVFQVEEVILQLTFVLD
Sbjct: 121 VHGLAGVVPSVPAVQGGQEEKQTAWFQPCFSVGAMRPRRLKYCCVFQVEEVILQLTFVLD 180
Query: 181 YWTYHTSPDCSYT 193
YWTYHTSPDCSYT
Sbjct: 181 YWTYHTSPDCSYT 193
>gi|239754586 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 412 bits (1059), Expect = e-116
Identities = 192/193 (99%), Positives = 193/193 (100%)
Query: 1 MDKWAQTHRPDGPPATAGPDSWTQAQCHVQTTGRHGTRGQMDVTPQCTGQATELEGRGQG 60
MDKWAQTHRPDGPPATAGPDSWTQAQCHVQTTGRHGTRGQMDVTPQCTGQATELEGRGQG
Sbjct: 1 MDKWAQTHRPDGPPATAGPDSWTQAQCHVQTTGRHGTRGQMDVTPQCTGQATELEGRGQG 60
Query: 61 PFGISALESCETRVVAALEAGVFRVCAAPGPASGLDPIQRSVSQDTGCAHNGSEDPSDQR 120
PFGISALESCETRVVAALEAGVFR+CAAPGPASGLDPIQRSVSQDTGCAHNGSEDPSDQR
Sbjct: 61 PFGISALESCETRVVAALEAGVFRICAAPGPASGLDPIQRSVSQDTGCAHNGSEDPSDQR 120
Query: 121 VHGLAGVVPSVPAVQGGQEEKQTAWFQPCFSVGAMRPRRLKYCCVFQVEEVILQLTFVLD 180
VHGLAGVVPSVPAVQGGQEEKQTAWFQPCFSVGAMRPRRLKYCCVFQVEEVILQLTFVLD
Sbjct: 121 VHGLAGVVPSVPAVQGGQEEKQTAWFQPCFSVGAMRPRRLKYCCVFQVEEVILQLTFVLD 180
Query: 181 YWTYHTSPDCSYT 193
YWTYHTSPDCSYT
Sbjct: 181 YWTYHTSPDCSYT 193
>gi|239754580 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 410 bits (1055), Expect = e-115
Identities = 191/193 (98%), Positives = 192/193 (99%)
Query: 1 MDKWAQTHRPDGPPATAGPDSWTQAQCHVQTTGRHGTRGQMDVTPQCTGQATELEGRGQG 60
MDKWAQTHRPDGPPATAGPDSWTQAQCHVQTTGRHGTRGQMDVTPQCTGQATELEGRGQG
Sbjct: 1 MDKWAQTHRPDGPPATAGPDSWTQAQCHVQTTGRHGTRGQMDVTPQCTGQATELEGRGQG 60
Query: 61 PFGISALESCETRVVAALEAGVFRVCAAPGPASGLDPIQRSVSQDTGCAHNGSEDPSDQR 120
PFGISALESCETRVVAALEAGVFR+CAAPGPASGLDPIQRSVSQDTGC HNGSEDPSDQR
Sbjct: 61 PFGISALESCETRVVAALEAGVFRICAAPGPASGLDPIQRSVSQDTGCTHNGSEDPSDQR 120
Query: 121 VHGLAGVVPSVPAVQGGQEEKQTAWFQPCFSVGAMRPRRLKYCCVFQVEEVILQLTFVLD 180
VHGLAGVVPSVPAVQGGQEEKQTAWFQPCFSVGAMRPRRLKYCCVFQVEEVILQLTFVLD
Sbjct: 121 VHGLAGVVPSVPAVQGGQEEKQTAWFQPCFSVGAMRPRRLKYCCVFQVEEVILQLTFVLD 180
Query: 181 YWTYHTSPDCSYT 193
YWTYHTSPDCSYT
Sbjct: 181 YWTYHTSPDCSYT 193
>gi|239743189 PREDICTED: hypothetical protein XP_002342800 [Homo
sapiens]
Length = 193
Score = 410 bits (1055), Expect = e-115
Identities = 192/193 (99%), Positives = 192/193 (99%)
Query: 1 MDKWAQTHRPDGPPATAGPDSWTQAQCHVQTTGRHGTRGQMDVTPQCTGQATELEGRGQG 60
MDKWAQTHRPDGPPATAGPDSWTQAQCHV TTGRHGTRGQMDVTPQCTGQATELEGRGQG
Sbjct: 1 MDKWAQTHRPDGPPATAGPDSWTQAQCHVHTTGRHGTRGQMDVTPQCTGQATELEGRGQG 60
Query: 61 PFGISALESCETRVVAALEAGVFRVCAAPGPASGLDPIQRSVSQDTGCAHNGSEDPSDQR 120
PFGISALESCETRVVAALEAGVFRVCAAPGPASGLDPIQRSVSQDTGCAHNGSEDPSDQR
Sbjct: 61 PFGISALESCETRVVAALEAGVFRVCAAPGPASGLDPIQRSVSQDTGCAHNGSEDPSDQR 120
Query: 121 VHGLAGVVPSVPAVQGGQEEKQTAWFQPCFSVGAMRPRRLKYCCVFQVEEVILQLTFVLD 180
VHGLAGVVPSVPAVQGGQEEKQTAWFQPCFSVGAMRPRRLKYCCVFQVEEVILQLTFVLD
Sbjct: 121 VHGLAGVVPSVPAVQGGQEEKQTAWFQPCFSVGAMRPRRLKYCCVFQVEEVILQLTFVLD 180
Query: 181 YWTYHTSPDCSYT 193
YWTYHTSPDCSYT
Sbjct: 181 YWTYHTSPDCSYT 193
>gi|239508858 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 410 bits (1055), Expect = e-115
Identities = 192/193 (99%), Positives = 192/193 (99%)
Query: 1 MDKWAQTHRPDGPPATAGPDSWTQAQCHVQTTGRHGTRGQMDVTPQCTGQATELEGRGQG 60
MDKWAQTHRPDGPPATAGPDSWTQAQCHV TTGRHGTRGQMDVTPQCTGQATELEGRGQG
Sbjct: 1 MDKWAQTHRPDGPPATAGPDSWTQAQCHVHTTGRHGTRGQMDVTPQCTGQATELEGRGQG 60
Query: 61 PFGISALESCETRVVAALEAGVFRVCAAPGPASGLDPIQRSVSQDTGCAHNGSEDPSDQR 120
PFGISALESCETRVVAALEAGVFRVCAAPGPASGLDPIQRSVSQDTGCAHNGSEDPSDQR
Sbjct: 61 PFGISALESCETRVVAALEAGVFRVCAAPGPASGLDPIQRSVSQDTGCAHNGSEDPSDQR 120
Query: 121 VHGLAGVVPSVPAVQGGQEEKQTAWFQPCFSVGAMRPRRLKYCCVFQVEEVILQLTFVLD 180
VHGLAGVVPSVPAVQGGQEEKQTAWFQPCFSVGAMRPRRLKYCCVFQVEEVILQLTFVLD
Sbjct: 121 VHGLAGVVPSVPAVQGGQEEKQTAWFQPCFSVGAMRPRRLKYCCVFQVEEVILQLTFVLD 180
Query: 181 YWTYHTSPDCSYT 193
YWTYHTSPDCSYT
Sbjct: 181 YWTYHTSPDCSYT 193
>gi|239757626 PREDICTED: hypothetical protein XP_002345507 [Homo
sapiens]
Length = 609
Score = 33.9 bits (76), Expect = 0.088
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 17 AGPDSWTQAQCHVQTTGRHGTRGQMDVTPQCTGQATELEGRG 58
AGPD+ TQ CH QTTG GT G Q Q++ GRG
Sbjct: 2 AGPDTGTQWWCHTQTTG--GTHGFDSHNAQTRLQSSRDVGRG 41
>gi|239746640 PREDICTED: hypothetical protein XP_002344234 [Homo
sapiens]
Length = 165
Score = 33.9 bits (76), Expect = 0.088
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 17 AGPDSWTQAQCHVQTTGRHGTRGQMDVTPQCTGQATELEGRG 58
AGPD+ TQ CH QTTG GT G Q Q++ GRG
Sbjct: 2 AGPDTGTQWWCHTQTTG--GTHGFDSHNAQTRLQSSRDVGRG 41
>gi|21493022 A kinase (PRKA) anchor protein 12 isoform 1 [Homo
sapiens]
Length = 1782
Score = 30.4 bits (67), Expect = 0.98
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 18/101 (17%)
Query: 16 TAGP---DSWTQAQCHVQTTGRHGTRGQMDVTPQCTGQAT---ELEGRGQGPFGISALES 69
TAGP + T+A +TT Q+ +P T +AT E+EG G+ +E
Sbjct: 981 TAGPLGAEEGTEASAAEETTEMVSAVSQLTDSPDTTEEATPVQEVEG------GVPDIEE 1034
Query: 70 CETRVVAALEAGVFRV------CAAPGPASGLDPIQRSVSQ 104
E R L+A +V GP L P+QR+ ++
Sbjct: 1035 QERRTQEVLQAVAEKVKEESQLPGTGGPEDVLQPVQRAEAE 1075
>gi|21493024 A kinase (PRKA) anchor protein 12 isoform 2 [Homo
sapiens]
Length = 1684
Score = 30.4 bits (67), Expect = 0.98
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 18/101 (17%)
Query: 16 TAGP---DSWTQAQCHVQTTGRHGTRGQMDVTPQCTGQAT---ELEGRGQGPFGISALES 69
TAGP + T+A +TT Q+ +P T +AT E+EG G+ +E
Sbjct: 883 TAGPLGAEEGTEASAAEETTEMVSAVSQLTDSPDTTEEATPVQEVEG------GVPDIEE 936
Query: 70 CETRVVAALEAGVFRV------CAAPGPASGLDPIQRSVSQ 104
E R L+A +V GP L P+QR+ ++
Sbjct: 937 QERRTQEVLQAVAEKVKEESQLPGTGGPEDVLQPVQRAEAE 977
>gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform b [Homo sapiens]
Length = 2188
Score = 30.0 bits (66), Expect = 1.3
Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 25/64 (39%)
Query: 88 APGPASGLDPIQR-------------------------SVSQDTGCAHNGSEDPSDQRVH 122
APGP +GL P R S GC H+ S DPSD+
Sbjct: 2017 APGPRAGLSPAARRRLSLRGRGLFSLRGLRAHQRSHSSGGSTSPGCTHHDSMDPSDEEGR 2076
Query: 123 GLAG 126
G AG
Sbjct: 2077 GGAG 2080
>gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform a [Homo sapiens]
Length = 2223
Score = 30.0 bits (66), Expect = 1.3
Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 25/64 (39%)
Query: 88 APGPASGLDPIQR-------------------------SVSQDTGCAHNGSEDPSDQRVH 122
APGP +GL P R S GC H+ S DPSD+
Sbjct: 2052 APGPRAGLSPAARRRLSLRGRGLFSLRGLRAHQRSHSSGGSTSPGCTHHDSMDPSDEEGR 2111
Query: 123 GLAG 126
G AG
Sbjct: 2112 GGAG 2115
>gi|239753559 PREDICTED: hypothetical protein XP_002345696 [Homo
sapiens]
Length = 366
Score = 29.6 bits (65), Expect = 1.7
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 111 NGSEDPSDQRVHGLAGVVPSVPAVQGGQEEKQTAWFQPCF 150
NGSE P Q +G PS P+ + E+K F PCF
Sbjct: 18 NGSERPGLQLFPSPSGSPPSRPSTRKAGEKKIRLLFGPCF 57
>gi|239748103 PREDICTED: hypothetical protein [Homo sapiens]
Length = 366
Score = 29.6 bits (65), Expect = 1.7
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 111 NGSEDPSDQRVHGLAGVVPSVPAVQGGQEEKQTAWFQPCF 150
NGSE P Q +G PS P+ + E+K F PCF
Sbjct: 18 NGSERPGLQLFPSPSGSPPSRPSTRKAGEKKIRLLFGPCF 57
>gi|239741999 PREDICTED: hypothetical protein XP_002342370 [Homo
sapiens]
Length = 366
Score = 29.6 bits (65), Expect = 1.7
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 111 NGSEDPSDQRVHGLAGVVPSVPAVQGGQEEKQTAWFQPCF 150
NGSE P Q +G PS P+ + E+K F PCF
Sbjct: 18 NGSERPGLQLFPSPSGSPPSRPSTRKAGEKKIRLLFGPCF 57
>gi|194097398 protein tyrosine phosphatase, receptor type, G
precursor [Homo sapiens]
Length = 1445
Score = 28.9 bits (63), Expect = 2.8
Identities = 31/127 (24%), Positives = 43/127 (33%), Gaps = 15/127 (11%)
Query: 11 DGPPATAGPDSWTQAQCHVQ----TTGRHGTRGQMDVTPQCTGQATELEGRGQGPFGISA 66
D P ++G +WT + TG + T +T L G G G GIS+
Sbjct: 469 DMAPISSGSSTWTSSGIPFSFVSMATGMGPSSSGSQATVASVVTSTLLAGLGFGGGGISS 528
Query: 67 LESC--ETRVVAALEAG---------VFRVCAAPGPASGLDPIQRSVSQDTGCAHNGSED 115
S TR+ A A A+PGP P + + G SE
Sbjct: 529 FPSTVWPTRLPTAASASKQAARPVLATTEALASPGPDGDSSPTKDGEGTEEGEKDEKSES 588
Query: 116 PSDQRVH 122
+R H
Sbjct: 589 EDGEREH 595
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 28.5 bits (62), Expect = 3.7
Identities = 34/132 (25%), Positives = 48/132 (36%), Gaps = 8/132 (6%)
Query: 10 PDGPPATAGPDSWTQAQCHVQTTGRHGTRGQMDVTPQCTGQATELEGRGQGPFGISALES 69
P GPP TAG A+ V G G+ G + Q GP GI+
Sbjct: 334 PPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPG 393
Query: 70 CETRVVAALEAGVFRVCAAPGP-----ASGLDPIQRSVSQDTGCAHNGSEDPSDQRVHGL 124
+ + A G + A GP A+G ++ + G P +R G
Sbjct: 394 GKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGER--GE 451
Query: 125 AGVVPSVPAVQG 136
AG +P VP +G
Sbjct: 452 AG-IPGVPGAKG 462
>gi|191252801 WDFY family member 4 [Homo sapiens]
Length = 3184
Score = 28.5 bits (62), Expect = 3.7
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 103 SQDTGCAHNGSEDPSDQRVHGLAGVVPSVPAVQGGQEEKQTA 144
++D A + +EDP + LA V P VP GGQ TA
Sbjct: 3 AEDLSKAEDRNEDPGSKNEGQLAAVQPDVP--HGGQSSSPTA 42
>gi|169217249 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 28.1 bits (61), Expect = 4.8
Identities = 31/129 (24%), Positives = 44/129 (34%), Gaps = 18/129 (13%)
Query: 13 PPATAGPDSWTQ----AQCHVQTTGRHGT-RGQMDVTPQCTGQATELEGRGQGPFGISAL 67
P TA SW + A H GR GT +G D GQ P G L
Sbjct: 38 PQDTADGVSWAKMNRAASRHADPVGRGGTWQGASDRW-------------GQSPAGKGGL 84
Query: 68 ESCETRVVAALEAGVFRVCAAPGPASGLDPIQRSVSQDTGCAHNGSEDPSDQRVHGLAGV 127
C +++ G+ V + P+ QRS+ + G H L+G+
Sbjct: 85 PPCSAARISSSPGGLPPVLSRVHPSVPRSVSQRSLMEALGSGHYVGGSIRSMAAAALSGL 144
Query: 128 VPSVPAVQG 136
+ QG
Sbjct: 145 AVRLSRPQG 153
>gi|98961138 ZXD family zinc finger C isoform 2 [Homo sapiens]
Length = 710
Score = 28.1 bits (61), Expect = 4.8
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 56 GRGQGPFGISALESCETRVVAALEAGVFRVCAAPGPASGLDPIQRSVSQDTGCAHNGSED 115
G G P G + S + ++ L+ GV + A PGPA+ R Q +G + G
Sbjct: 120 GPGVAPAGAVTISSQD--LLVRLDRGVLALSAPPGPATAGAAAPRRAPQASGPSTPGYRC 177
Query: 116 PSDQ 119
P Q
Sbjct: 178 PEPQ 181
>gi|98961133 ZXD family zinc finger C isoform 1 [Homo sapiens]
Length = 858
Score = 28.1 bits (61), Expect = 4.8
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 56 GRGQGPFGISALESCETRVVAALEAGVFRVCAAPGPASGLDPIQRSVSQDTGCAHNGSED 115
G G P G + S + ++ L+ GV + A PGPA+ R Q +G + G
Sbjct: 120 GPGVAPAGAVTISSQD--LLVRLDRGVLALSAPPGPATAGAAAPRRAPQASGPSTPGYRC 177
Query: 116 PSDQ 119
P Q
Sbjct: 178 PEPQ 181
>gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens]
Length = 703
Score = 27.7 bits (60), Expect = 6.3
Identities = 28/96 (29%), Positives = 36/96 (37%), Gaps = 10/96 (10%)
Query: 10 PDGPPATAGPDSWTQAQCHVQTTGRHGTRGQMDV--TPQCTGQATELEGRG-------QG 60
P GPP GP H + G G +G+ +P G+A E G G
Sbjct: 513 PQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEGLQGVPG 572
Query: 61 PFGISALESCETRVVAALEAGVFRVCAAPGPASGLD 96
P G + L+ + E G PG ASGLD
Sbjct: 573 PKGEAGLDGAKGEKGFQGEKGDRGPLGLPG-ASGLD 607
>gi|31542731 major facilitator superfamily domain containing 7 [Homo
sapiens]
Length = 559
Score = 27.7 bits (60), Expect = 6.3
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 33 GRHGTRGQMDVTPQCTGQATELEG-RGQGPFGISALESCETRVVAALEAGVFRVCAAPGP 91
GR G G TP+CT + LE RG G S +C A + PG
Sbjct: 477 GRAGVLGPSTATPECTARGASLEDPRGPG----SPHPACHRATPRAQGPAATDAPSRPGR 532
Query: 92 ASGLDPIQRSVSQDTGCAHNGSEDP 116
+G +Q S D +H+ P
Sbjct: 533 LAG--RVQASRFIDPAGSHSSFSSP 555
>gi|221316699 maltase-glucoamylase [Homo sapiens]
Length = 1857
Score = 27.3 bits (59), Expect = 8.3
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 7 THRPDGPPATAGPDSWTQAQCHVQTTG--RHGTRGQMDVTPQC 47
T PD P T PD T H +TTG GT G V+ +C
Sbjct: 49 TGTPD-PGTTGTPDPGTTGTTHARTTGPPDPGTTGTTPVSAEC 90
>gi|113204609 zinc finger protein 750 [Homo sapiens]
Length = 723
Score = 27.3 bits (59), Expect = 8.3
Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 8/105 (7%)
Query: 61 PFGISALESCETRVVAALEAGVFRVCAAPGPASGLDPIQRSVSQDTGCAHN----GSEDP 116
P +S + C T+ G R A PA+ + + + G +H GS D
Sbjct: 550 PLNLSVKDPCNTQAPRPAFPGRPR---AAEPAAAVPQKTGTEGSEDGPSHPETKPGSLDG 606
Query: 117 SDQRVHGLAGVVPSVPAVQGGQEEKQTAWFQPCFSVGAMRPRRLK 161
G P AV +E+KQTA C + A PR ++
Sbjct: 607 DGAPPTGPGEEAPDACAVDSSEEQKQTAAVALC-QLAAYSPRNIR 650
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,315,925
Number of Sequences: 37866
Number of extensions: 448542
Number of successful extensions: 1141
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1124
Number of HSP's gapped (non-prelim): 27
length of query: 193
length of database: 18,247,518
effective HSP length: 97
effective length of query: 96
effective length of database: 14,574,516
effective search space: 1399153536
effective search space used: 1399153536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.