Search of human proteins with 239742564

Search of human proteins with 239742564

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239742564 PREDICTED: hypothetical protein XP_002342575 [Homo
sapiens]
         (142 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239742564 PREDICTED: hypothetical protein XP_002342575 [Homo ...   299   5e-82
gi|239742568 PREDICTED: hypothetical protein XP_002342577 [Homo ...   188   1e-48
gi|239748531 PREDICTED: similar to hCG1820960 [Homo sapiens]           93   8e-20
gi|4504223 glucuronidase, beta [Homo sapiens]                          91   3e-19
gi|62988324 tenascin N [Homo sapiens]                                  30   0.52 
gi|4557373 biotinidase precursor [Homo sapiens]                        27   4.4  
gi|4557643 3-hydroxy-3-methylglutaryl-Coenzyme A reductase isofo...    27   7.4  
gi|169790964 hypothetical protein LOC51252 isoform A [Homo sapiens]    27   7.4  
gi|225007652 processing of precursor 1 [Homo sapiens]                  26   9.7  
gi|225007650 processing of precursor 1 [Homo sapiens]                  26   9.7  
gi|225007648 processing of precursor 1 [Homo sapiens]                  26   9.7  
gi|90193592 CD79B antigen isoform 3 precursor [Homo sapiens]           26   9.7  
gi|239746677 PREDICTED: preferentially expressed antigen in mela...    26   9.7  
gi|24308334 family with sequence similarity 120B [Homo sapiens]        26   9.7  
gi|94400921 trypsin domain containing 1 isoform a [Homo sapiens]       26   9.7  

>gi|239742564 PREDICTED: hypothetical protein XP_002342575 [Homo
           sapiens]
          Length = 142

 Score =  299 bits (766), Expect = 5e-82
 Identities = 142/142 (100%), Positives = 142/142 (100%)

Query: 1   MISNFSLAVFTLASVSPAVPTAPSEDRYFGHHQVDLYFYLTFTILPVLTLNSLCLESQDP 60
           MISNFSLAVFTLASVSPAVPTAPSEDRYFGHHQVDLYFYLTFTILPVLTLNSLCLESQDP
Sbjct: 1   MISNFSLAVFTLASVSPAVPTAPSEDRYFGHHQVDLYFYLTFTILPVLTLNSLCLESQDP 60

Query: 61  PLMFSEEDRKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTNQCKWQFSAWDNVPVLIFS 120
           PLMFSEEDRKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTNQCKWQFSAWDNVPVLIFS
Sbjct: 61  PLMFSEEDRKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTNQCKWQFSAWDNVPVLIFS 120

Query: 121 GCLAHSGHFGCKNIGNKGGNLV 142
           GCLAHSGHFGCKNIGNKGGNLV
Sbjct: 121 GCLAHSGHFGCKNIGNKGGNLV 142


>gi|239742568 PREDICTED: hypothetical protein XP_002342577 [Homo
           sapiens]
          Length = 99

 Score =  188 bits (478), Expect = 1e-48
 Identities = 98/142 (69%), Positives = 98/142 (69%), Gaps = 44/142 (30%)

Query: 1   MISNFSLAVFTLASVSPAVPTAPSEDRYFGHHQVDLYFYLTFTILPVLTLNSLCLESQDP 60
           MISNFSLAVFTLAS                                            DP
Sbjct: 2   MISNFSLAVFTLAS--------------------------------------------DP 17

Query: 61  PLMFSEEDRKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTNQCKWQFSAWDNVPVLIFS 120
           PLMFSEEDRKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTNQCKWQFSAWDNVPVLIFS
Sbjct: 18  PLMFSEEDRKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTNQCKWQFSAWDNVPVLIFS 77

Query: 121 GCLAHSGHFGCKNIGNKGGNLV 142
           GCLAHSGHFGCKNIGNKGGNLV
Sbjct: 78  GCLAHSGHFGCKNIGNKGGNLV 99


>gi|239748531 PREDICTED: similar to hCG1820960 [Homo sapiens]
          Length = 86

 Score = 92.8 bits (229), Expect = 8e-20
 Identities = 44/51 (86%), Positives = 47/51 (92%)

Query: 55  LESQDPPLMFSEEDRKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTNQCK 105
           L  +DPPLMFSEE +KSLLEQYHLGL+QKRRKYVVGELIWNFADFMTNQ K
Sbjct: 11  LFEKDPPLMFSEEYQKSLLEQYHLGLNQKRRKYVVGELIWNFADFMTNQSK 61


>gi|4504223 glucuronidase, beta [Homo sapiens]
          Length = 651

 Score = 90.9 bits (224), Expect = 3e-19
 Identities = 42/46 (91%), Positives = 44/46 (95%)

Query: 58  QDPPLMFSEEDRKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTNQ 103
           QDPPLMF+EE +KSLLEQYHLGLDQKRRKYVVGELIWNFADFMT Q
Sbjct: 551 QDPPLMFTEEYQKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTEQ 596


>gi|62988324 tenascin N [Homo sapiens]
          Length = 1299

 Score = 30.4 bits (67), Expect = 0.52
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 62   LMFSEEDRKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTNQCKWQFSAWDNVPVLIFSG 121
            L  + E   ++ + + +   ++R K  VG+      D +T    W+F+ +D    +  S 
Sbjct: 1164 LQTANESAYAIYDFFQVASSKERYKLTVGKYRGTAGDALTYHNGWKFTTFDRDNDIALSN 1223

Query: 122  C-LAHSGHFGCKN 133
            C L H G +  KN
Sbjct: 1224 CALTHHGGWWYKN 1236


>gi|4557373 biotinidase precursor [Homo sapiens]
          Length = 543

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 20/150 (13%)

Query: 7   LAVFTLASVSPAVPTAPSEDRYFGHHQVDLYFYLTFTILPVLTLNSLCLESQDPPLMFSE 66
           LA+F       A+     E+    HH+ + Y    +    +L+LN L L S+   L    
Sbjct: 28  LALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMN 87

Query: 67  EDRKSLLEQYHLGLDQKRRKYVV------------GELIWNFADFMTNQ--CKW----QF 108
           ++   + EQ  +   QK  + +V               I+ F DFM +    +W    + 
Sbjct: 88  QN-LDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEP 146

Query: 109 SAWDNVPVLIFSGCLAHSGH-FGCKNIGNK 137
             +++  VL    C+A  G  F   N+G K
Sbjct: 147 HRFNDTEVLQRLSCMAIRGDMFLVANLGTK 176


>gi|4557643 3-hydroxy-3-methylglutaryl-Coenzyme A reductase isoform
           1 [Homo sapiens]
          Length = 888

 Score = 26.6 bits (57), Expect = 7.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 114 VPVLIFSGCLAHSGHFGCKNIGNKGG 139
           VP+    GCL  S + GC+ IG  GG
Sbjct: 553 VPMATTEGCLVASTNRGCRAIGLGGG 578


>gi|169790964 hypothetical protein LOC51252 isoform A [Homo sapiens]
          Length = 647

 Score = 26.6 bits (57), Expect = 7.4
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 73  LEQYHLGLDQKRRKYVVGELIWNFADFMTNQCKWQFS 109
           LEQ HL LD KR   +  +L WN +         +FS
Sbjct: 122 LEQEHLDLDPKRGLALPEKLFWNTSGLSQQAAAPEFS 158


>gi|225007652 processing of precursor 1 [Homo sapiens]
          Length = 1024

 Score = 26.2 bits (56), Expect = 9.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 62  LMFSEEDRKSLLEQYHLGLDQKRRKYV 88
           ++F+EE  K+LLE+Y      KR  YV
Sbjct: 670 MLFAEEQAKNLLEKYKRRPPAKRPNYV 696


>gi|225007650 processing of precursor 1 [Homo sapiens]
          Length = 1024

 Score = 26.2 bits (56), Expect = 9.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 62  LMFSEEDRKSLLEQYHLGLDQKRRKYV 88
           ++F+EE  K+LLE+Y      KR  YV
Sbjct: 670 MLFAEEQAKNLLEKYKRRPPAKRPNYV 696


>gi|225007648 processing of precursor 1 [Homo sapiens]
          Length = 1024

 Score = 26.2 bits (56), Expect = 9.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 62  LMFSEEDRKSLLEQYHLGLDQKRRKYV 88
           ++F+EE  K+LLE+Y      KR  YV
Sbjct: 670 MLFAEEQAKNLLEKYKRRPPAKRPNYV 696


>gi|90193592 CD79B antigen isoform 3 precursor [Homo sapiens]
          Length = 230

 Score = 26.2 bits (56), Expect = 9.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 3  SNFSLAVFTLASVSPAVPTAPSEDRY 28
          S++ +A+  L S +  VP A SEDRY
Sbjct: 11 SHWMVALLLLLSAAEPVPAARSEDRY 36


>gi|239746677 PREDICTED: preferentially expressed antigen in
           melanoma-like [Homo sapiens]
          Length = 520

 Score = 26.2 bits (56), Expect = 9.7
 Identities = 13/36 (36%), Positives = 15/36 (41%)

Query: 93  IWNFADFMTNQCKWQFSAWDNVPVLIFSGCLAHSGH 128
           I+N   F     KW FS+W   P   F   L   GH
Sbjct: 285 IFNLRSFKLFYYKWAFSSWVRRPSSYFFSQLTMLGH 320


>gi|24308334 family with sequence similarity 120B [Homo sapiens]
          Length = 910

 Score = 26.2 bits (56), Expect = 9.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 39  YLTFTILPVLTLNSLCLESQDPPLMFSEEDRKSL 72
           YL +   P  +++ LCLES D  ++  E+  +SL
Sbjct: 182 YLIYDTCPYFSISELCLESLDTVMLCREKLCESL 215


>gi|94400921 trypsin domain containing 1 isoform a [Homo sapiens]
          Length = 566

 Score = 26.2 bits (56), Expect = 9.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 112 DNVPVLIFSGCLAHSGHFGCKNIGNKGGNLV 142
           +  PV++ + C  HSG  G     N  GNL+
Sbjct: 464 NGTPVMLQTTCAVHSGSSGGPLFSNHSGNLL 494


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.139    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,018,463
Number of Sequences: 37866
Number of extensions: 251627
Number of successful extensions: 655
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 640
Number of HSP's gapped (non-prelim): 16
length of query: 142
length of database: 18,247,518
effective HSP length: 92
effective length of query: 50
effective length of database: 14,763,846
effective search space: 738192300
effective search space used: 738192300
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.