Guide to the Human Genome
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Name: LOC100288916 Sequence: fasta or formatted (99aa) NCBI GI: 239742568
Description:

PREDICTED: hypothetical protein XP_002342577

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1          5           1
 C cysteine            3.0          3           1
 D aspartate           5.1          5           1
 E glutamate           4.0          4           2
 F phenylalanine       8.1          8           1
 G glycine             8.1          8           2
 H histidine           3.0          3           1
 I isoleucine          4.0          4           1
 K lysine              6.1          6           1
 L leucine            11.1         11           2
 M methionine          4.0          4           2
 N asparagine          7.1          7           1
 P proline             3.0          3           2
 Q glutamine           4.0          4           1
 R arginine            3.0          3           2
 S serine              8.1          8           1
 T threonine           2.0          2           1
 V valine              6.1          6           2
 W tryptophan          3.0          3           1
 Y tyrosine            2.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342577 
LOC100288852          0.876   PREDICTED: hypothetical protein XP_002342575 
LOC100294451          0.371   PREDICTED: similar to hCG1820960 
GUSB                  0.344   glucuronidase, beta 
TNN                   0.027   tenascin N 
HMGCR                 0.011   3-hydroxy-3-methylglutaryl-Coenzyme A reductase isofo...
FAM178B               0.011   hypothetical protein LOC51252 isoform A 
POP1                  0.005   processing of precursor 1 
POP1                  0.005   processing of precursor 1 
POP1                  0.005   processing of precursor 1 
PRAMEL                0.005   PREDICTED: preferentially expressed antigen in mela...
TYSND1                0.005   trypsin domain containing 1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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