Guide to the Human Genome
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Search of human proteins with 239742082

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239742082 PREDICTED: hypothetical protein XP_002342432 [Homo
sapiens]
         (100 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753639 PREDICTED: similar to hCG2040339 [Homo sapiens]          211   1e-55
gi|239748188 PREDICTED: similar to hCG2040339 [Homo sapiens]          211   1e-55
gi|239742082 PREDICTED: hypothetical protein XP_002342432 [Homo ...   211   1e-55
gi|4505357 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4...   138   1e-33
gi|239755555 PREDICTED: similar to NADH dehydrogenase (ubiquinon...   126   3e-30
gi|239750055 PREDICTED: hypothetical protein XP_002347281 [Homo ...   126   3e-30
gi|239744362 PREDICTED: hypothetical protein XP_002343134 [Homo ...   126   3e-30
gi|10047138 NADH:ubiquinone oxidoreductase MLRQ subunit homolog ...   105   1e-23
gi|14165280 normal mucosa of esophagus specific 1 [Homo sapiens]       47   3e-06
gi|37694067 normal mucosa of esophagus specific 1 [Homo sapiens]       47   3e-06
gi|197927448 WD repeat domain 6 protein [Homo sapiens]                 27   4.5  
gi|226958478 zinc finger protein 727 [Homo sapiens]                    26   5.9  
gi|239508879 PREDICTED: similar to zinc finger protein 208 [Homo...    26   5.9  
gi|192447434 carbonic anhydrase I [Homo sapiens]                       26   5.9  
gi|192447432 carbonic anhydrase I [Homo sapiens]                       26   5.9  
gi|192447430 carbonic anhydrase I [Homo sapiens]                       26   5.9  
gi|4502517 carbonic anhydrase I [Homo sapiens]                         26   5.9  
gi|239757210 PREDICTED: similar to Zinc finger protein ENSP00000...    26   7.8  
gi|239751716 PREDICTED: similar to Zinc finger protein ENSP00000...    26   7.8  
gi|239746219 PREDICTED: similar to Zinc finger protein ENSP00000...    26   7.8  
gi|45593140 GTP binding protein 2 [Homo sapiens]                       26   7.8  

>gi|239753639 PREDICTED: similar to hCG2040339 [Homo sapiens]
          Length = 100

 Score =  211 bits (536), Expect = 1e-55
 Identities = 100/100 (100%), Positives = 100/100 (100%)

Query: 1   MVRSGCFRSPLLEASATNILCQIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPD 60
           MVRSGCFRSPLLEASATNILCQIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPD
Sbjct: 1   MVRSGCFRSPLLEASATNILCQIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPD 60

Query: 61  VNWDRKNNSEPWNKLDPNDQYKFYSVNVDYSKLKKEGPDF 100
           VNWDRKNNSEPWNKLDPNDQYKFYSVNVDYSKLKKEGPDF
Sbjct: 61  VNWDRKNNSEPWNKLDPNDQYKFYSVNVDYSKLKKEGPDF 100


>gi|239748188 PREDICTED: similar to hCG2040339 [Homo sapiens]
          Length = 100

 Score =  211 bits (536), Expect = 1e-55
 Identities = 100/100 (100%), Positives = 100/100 (100%)

Query: 1   MVRSGCFRSPLLEASATNILCQIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPD 60
           MVRSGCFRSPLLEASATNILCQIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPD
Sbjct: 1   MVRSGCFRSPLLEASATNILCQIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPD 60

Query: 61  VNWDRKNNSEPWNKLDPNDQYKFYSVNVDYSKLKKEGPDF 100
           VNWDRKNNSEPWNKLDPNDQYKFYSVNVDYSKLKKEGPDF
Sbjct: 61  VNWDRKNNSEPWNKLDPNDQYKFYSVNVDYSKLKKEGPDF 100


>gi|239742082 PREDICTED: hypothetical protein XP_002342432 [Homo
           sapiens]
          Length = 100

 Score =  211 bits (536), Expect = 1e-55
 Identities = 100/100 (100%), Positives = 100/100 (100%)

Query: 1   MVRSGCFRSPLLEASATNILCQIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPD 60
           MVRSGCFRSPLLEASATNILCQIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPD
Sbjct: 1   MVRSGCFRSPLLEASATNILCQIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPD 60

Query: 61  VNWDRKNNSEPWNKLDPNDQYKFYSVNVDYSKLKKEGPDF 100
           VNWDRKNNSEPWNKLDPNDQYKFYSVNVDYSKLKKEGPDF
Sbjct: 61  VNWDRKNNSEPWNKLDPNDQYKFYSVNVDYSKLKKEGPDF 100


>gi|4505357 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4,
           9kDa [Homo sapiens]
          Length = 81

 Score =  138 bits (347), Expect = 1e-33
 Identities = 68/82 (82%), Positives = 70/82 (85%), Gaps = 1/82 (1%)

Query: 19  ILCQIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVNWDRKNNSEPWNKLDPN 78
           +L QII Q KKHPSL+PLFVFIG G TGA LYLL LALFNPDV WDR NN EPWNKL PN
Sbjct: 1   MLRQIIGQAKKHPSLIPLFVFIGTGATGATLYLLRLALFNPDVCWDR-NNPEPWNKLGPN 59

Query: 79  DQYKFYSVNVDYSKLKKEGPDF 100
           DQYKFYSVNVDYSKLKKE PDF
Sbjct: 60  DQYKFYSVNVDYSKLKKERPDF 81


>gi|239755555 PREDICTED: similar to NADH dehydrogenase (ubiquinone)
           1 alpha subcomplex, 4 [Homo sapiens]
          Length = 82

 Score =  126 bits (317), Expect = 3e-30
 Identities = 58/79 (73%), Positives = 65/79 (82%)

Query: 22  QIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVNWDRKNNSEPWNKLDPNDQY 81
           Q +SQ KK+PSL+  F+FIG G TGAA Y+L LA F+PDV+W R NN EPWNKL PNDQY
Sbjct: 4   QTLSQTKKNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPNDQY 63

Query: 82  KFYSVNVDYSKLKKEGPDF 100
           K YSVNVDYSKLKKEGPDF
Sbjct: 64  KSYSVNVDYSKLKKEGPDF 82


>gi|239750055 PREDICTED: hypothetical protein XP_002347281 [Homo
           sapiens]
          Length = 82

 Score =  126 bits (317), Expect = 3e-30
 Identities = 58/79 (73%), Positives = 65/79 (82%)

Query: 22  QIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVNWDRKNNSEPWNKLDPNDQY 81
           Q +SQ KK+PSL+  F+FIG G TGAA Y+L LA F+PDV+W R NN EPWNKL PNDQY
Sbjct: 4   QTLSQTKKNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPNDQY 63

Query: 82  KFYSVNVDYSKLKKEGPDF 100
           K YSVNVDYSKLKKEGPDF
Sbjct: 64  KSYSVNVDYSKLKKEGPDF 82


>gi|239744362 PREDICTED: hypothetical protein XP_002343134 [Homo
           sapiens]
          Length = 82

 Score =  126 bits (317), Expect = 3e-30
 Identities = 58/79 (73%), Positives = 65/79 (82%)

Query: 22  QIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVNWDRKNNSEPWNKLDPNDQY 81
           Q +SQ KK+PSL+  F+FIG G TGAA Y+L LA F+PDV+W R NN EPWNKL PNDQY
Sbjct: 4   QTLSQTKKNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPNDQY 63

Query: 82  KFYSVNVDYSKLKKEGPDF 100
           K YSVNVDYSKLKKEGPDF
Sbjct: 64  KSYSVNVDYSKLKKEGPDF 82


>gi|10047138 NADH:ubiquinone oxidoreductase MLRQ subunit homolog
           [Homo sapiens]
          Length = 87

 Score =  105 bits (261), Expect = 1e-23
 Identities = 47/75 (62%), Positives = 58/75 (77%)

Query: 26  QVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVNWDRKNNSEPWNKLDPNDQYKFYS 85
           Q+K+HP ++P+   I +G   AALYLL LAL +PDV WDRKNN EPWN+L PNDQYKF +
Sbjct: 13  QIKRHPGIIPMIGLICLGMGSAALYLLRLALRSPDVCWDRKNNPEPWNRLSPNDQYKFLA 72

Query: 86  VNVDYSKLKKEGPDF 100
           V+ DY KLKK+ PDF
Sbjct: 73  VSTDYKKLKKDRPDF 87


>gi|14165280 normal mucosa of esophagus specific 1 [Homo sapiens]
          Length = 83

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 29 KHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVNWDRKNNSEPWNKLDPNDQYKFYSVNV 88
          K   L+PL VF+ V   GA+ + ++ +L+  DV  DRK N EPW  +DP    K  ++N 
Sbjct: 9  KRKELIPLVVFMTVAAGGASSFAVY-SLWKTDVILDRKKNPEPWETVDPTVPQKLITINQ 67

Query: 89 DYSKLKK 95
           +  +++
Sbjct: 68 QWKPIEE 74


>gi|37694067 normal mucosa of esophagus specific 1 [Homo sapiens]
          Length = 83

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 29 KHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVNWDRKNNSEPWNKLDPNDQYKFYSVNV 88
          K   L+PL VF+ V   GA+ + ++ +L+  DV  DRK N EPW  +DP    K  ++N 
Sbjct: 9  KRKELIPLVVFMTVAAGGASSFAVY-SLWKTDVILDRKKNPEPWETVDPTVPQKLITINQ 67

Query: 89 DYSKLKK 95
           +  +++
Sbjct: 68 QWKPIEE 74


>gi|197927448 WD repeat domain 6 protein [Homo sapiens]
          Length = 1151

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 48  ALYLLFLALFNPDVNWDRKNNSEPWNKLDPNDQYKFYSV 86
           A +++ L+    D  WDR+ N     K+DP  +Y   +V
Sbjct: 859 ACHVMHLSSHRLDEYWDRQRNRHRMVKVDPETRYMSLAV 897


>gi|226958478 zinc finger protein 727 [Homo sapiens]
          Length = 499

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 49 LYLLFLALFNPDVNWDRKNNSEPWN 73
          L+ L LA+F PD+    +   EPWN
Sbjct: 40 LFSLGLAIFKPDLITYLEQRKEPWN 64


>gi|239508879 PREDICTED: similar to zinc finger protein 208 [Homo
           sapiens]
          Length = 1102

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 49  LYLLFLALFNPDVNWDRKNNSEPWN 73
           L+ L LA+F PD+    +   EPWN
Sbjct: 479 LFSLGLAIFKPDLITYLEQRKEPWN 503


>gi|192447434 carbonic anhydrase I [Homo sapiens]
          Length = 261

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 58 NPDVNWDRKNNSEPWNKLDP 77
          +PD  +D KN  E W+KL P
Sbjct: 3  SPDWGYDDKNGPEQWSKLYP 22


>gi|192447432 carbonic anhydrase I [Homo sapiens]
          Length = 261

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 58 NPDVNWDRKNNSEPWNKLDP 77
          +PD  +D KN  E W+KL P
Sbjct: 3  SPDWGYDDKNGPEQWSKLYP 22


>gi|192447430 carbonic anhydrase I [Homo sapiens]
          Length = 261

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 58 NPDVNWDRKNNSEPWNKLDP 77
          +PD  +D KN  E W+KL P
Sbjct: 3  SPDWGYDDKNGPEQWSKLYP 22


>gi|4502517 carbonic anhydrase I [Homo sapiens]
          Length = 261

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 58 NPDVNWDRKNNSEPWNKLDP 77
          +PD  +D KN  E W+KL P
Sbjct: 3  SPDWGYDDKNGPEQWSKLYP 22


>gi|239757210 PREDICTED: similar to Zinc finger protein
           ENSP00000350085 [Homo sapiens]
          Length = 118

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 49  LYLLFLALFNPDVNWDRKNNSEPWN 73
           L  L +A+F PD+    K   EPWN
Sbjct: 77  LVFLGMAVFKPDLITCLKQGKEPWN 101


>gi|239751716 PREDICTED: similar to Zinc finger protein
           ENSP00000350085 [Homo sapiens]
          Length = 118

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 49  LYLLFLALFNPDVNWDRKNNSEPWN 73
           L  L +A+F PD+    K   EPWN
Sbjct: 77  LVFLGMAVFKPDLITCLKQGKEPWN 101


>gi|239746219 PREDICTED: similar to Zinc finger protein
           ENSP00000350085 [Homo sapiens]
          Length = 118

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 49  LYLLFLALFNPDVNWDRKNNSEPWN 73
           L  L +A+F PD+    K   EPWN
Sbjct: 77  LVFLGMAVFKPDLITCLKQGKEPWN 101


>gi|45593140 GTP binding protein 2 [Homo sapiens]
          Length = 602

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 5   GCFRSPLLEASATNILCQIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVN 62
           GC + P+L  S  + +     Q  + P++ P+F    V      L  +FL +  P  N
Sbjct: 341 GCHKVPMLVTSEDDAVTAA-QQFAQSPNVTPIFTLSSVSGESLDLLKVFLNILPPLTN 397


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.139    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,830,977
Number of Sequences: 37866
Number of extensions: 146235
Number of successful extensions: 277
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 254
Number of HSP's gapped (non-prelim): 21
length of query: 100
length of database: 18,247,518
effective HSP length: 71
effective length of query: 29
effective length of database: 15,559,032
effective search space: 451211928
effective search space used: 451211928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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