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Search of human proteins with 239742072
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742072 PREDICTED: hypothetical protein LOC391556 [Homo
sapiens]
(103 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169165527 PREDICTED: similar to hCG1643855 [Homo sapiens] 219 3e-58
gi|239742072 PREDICTED: hypothetical protein LOC391556 [Homo sap... 219 3e-58
gi|5032027 retinoblastoma binding protein 4 isoform a [Homo sapi... 174 2e-44
gi|207029415 retinoblastoma binding protein 4 isoform b [Homo sa... 167 1e-42
gi|4506439 retinoblastoma binding protein 7 [Homo sapiens] 145 9e-36
gi|207029439 retinoblastoma binding protein 4 isoform c [Homo sa... 120 2e-28
gi|195963316 PWWP domain containing 2A isoform b [Homo sapiens] 27 2.6
gi|153791982 PWWP domain containing 2A isoform a [Homo sapiens] 27 2.6
gi|31657129 phosphoribosylformylglycinamidine synthase [Homo sap... 27 4.5
gi|109633022 mucosal vascular addressin cell adhesion molecule 1... 26 7.7
gi|46389556 endosulfine alpha isoform 5 [Homo sapiens] 26 7.7
gi|46389552 endosulfine alpha isoform 2 [Homo sapiens] 26 7.7
gi|46389550 endosulfine alpha isoform 1 [Homo sapiens] 26 7.7
>gi|169165527 PREDICTED: similar to hCG1643855 [Homo sapiens]
Length = 103
Score = 219 bits (559), Expect = 3e-58
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MTNKEAAFDNAVEEHVIKEEYKIWKNNTSFPYDLVMTQALEWPSLTAQWLPDVTRPEGKD 60
MTNKEAAFDNAVEEHVIKEEYKIWKNNTSFPYDLVMTQALEWPSLTAQWLPDVTRPEGKD
Sbjct: 1 MTNKEAAFDNAVEEHVIKEEYKIWKNNTSFPYDLVMTQALEWPSLTAQWLPDVTRPEGKD 60
Query: 61 FSSHRLVPGTHTSVEQNHLVQLPSDDAQLDASHYNSKKGECGG 103
FSSHRLVPGTHTSVEQNHLVQLPSDDAQLDASHYNSKKGECGG
Sbjct: 61 FSSHRLVPGTHTSVEQNHLVQLPSDDAQLDASHYNSKKGECGG 103
>gi|239742072 PREDICTED: hypothetical protein LOC391556 [Homo
sapiens]
Length = 103
Score = 219 bits (559), Expect = 3e-58
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MTNKEAAFDNAVEEHVIKEEYKIWKNNTSFPYDLVMTQALEWPSLTAQWLPDVTRPEGKD 60
MTNKEAAFDNAVEEHVIKEEYKIWKNNTSFPYDLVMTQALEWPSLTAQWLPDVTRPEGKD
Sbjct: 1 MTNKEAAFDNAVEEHVIKEEYKIWKNNTSFPYDLVMTQALEWPSLTAQWLPDVTRPEGKD 60
Query: 61 FSSHRLVPGTHTSVEQNHLVQLPSDDAQLDASHYNSKKGECGG 103
FSSHRLVPGTHTSVEQNHLVQLPSDDAQLDASHYNSKKGECGG
Sbjct: 61 FSSHRLVPGTHTSVEQNHLVQLPSDDAQLDASHYNSKKGECGG 103
>gi|5032027 retinoblastoma binding protein 4 isoform a [Homo
sapiens]
Length = 425
Score = 174 bits (440), Expect = 2e-44
Identities = 86/107 (80%), Positives = 91/107 (85%), Gaps = 4/107 (3%)
Query: 1 MTNKEAAFDNAVEEHVIKEEYKIWKNNTSFPYDLVMTQALEWPSLTAQWLPDVTRPEGKD 60
M +KEAAFD+AVEE VI EEYKIWK NT F YDLVMT ALEWPSLTAQWLPDVTRPEGKD
Sbjct: 1 MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 60
Query: 61 FSSHRLVPGTHTSVEQNHL----VQLPSDDAQLDASHYNSKKGECGG 103
FS HRLV GTHTS EQNHL VQLP+DDAQ DASHY+S+KGE GG
Sbjct: 61 FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGG 107
>gi|207029415 retinoblastoma binding protein 4 isoform b [Homo
sapiens]
Length = 424
Score = 167 bits (424), Expect = 1e-42
Identities = 85/107 (79%), Positives = 90/107 (84%), Gaps = 5/107 (4%)
Query: 1 MTNKEAAFDNAVEEHVIKEEYKIWKNNTSFPYDLVMTQALEWPSLTAQWLPDVTRPEGKD 60
M +KEA FD+AVEE VI EEYKIWK NT F YDLVMT ALEWPSLTAQWLPDVTRPEGKD
Sbjct: 1 MADKEA-FDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 59
Query: 61 FSSHRLVPGTHTSVEQNHL----VQLPSDDAQLDASHYNSKKGECGG 103
FS HRLV GTHTS EQNHL VQLP+DDAQ DASHY+S+KGE GG
Sbjct: 60 FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGG 106
>gi|4506439 retinoblastoma binding protein 7 [Homo sapiens]
Length = 425
Score = 145 bits (365), Expect = 9e-36
Identities = 72/107 (67%), Positives = 83/107 (77%), Gaps = 5/107 (4%)
Query: 1 MTNKEAAFDNAVEEHVIKEEYKIWKNNTSFPYDLVMTQALEWPSLTAQWLPDVTRPEGKD 60
M +KE F++ VEE VI EEYKIWK NT F YDLVMT AL+WPSLT QWLP+VT+PEGKD
Sbjct: 1 MASKEM-FEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKD 59
Query: 61 FSSHRLVPGTHTSVEQNHL----VQLPSDDAQLDASHYNSKKGECGG 103
++ H LV GTHTS EQNHL V +P+DDAQ DASH +S KGE GG
Sbjct: 60 YALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGG 106
>gi|207029439 retinoblastoma binding protein 4 isoform c [Homo
sapiens]
Length = 390
Score = 120 bits (301), Expect = 2e-28
Identities = 59/72 (81%), Positives = 62/72 (86%), Gaps = 4/72 (5%)
Query: 36 MTQALEWPSLTAQWLPDVTRPEGKDFSSHRLVPGTHTSVEQNHL----VQLPSDDAQLDA 91
MT ALEWPSLTAQWLPDVTRPEGKDFS HRLV GTHTS EQNHL VQLP+DDAQ DA
Sbjct: 1 MTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDA 60
Query: 92 SHYNSKKGECGG 103
SHY+S+KGE GG
Sbjct: 61 SHYDSEKGEFGG 72
>gi|195963316 PWWP domain containing 2A isoform b [Homo sapiens]
Length = 755
Score = 27.3 bits (59), Expect = 2.6
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 41 EWPSLTAQWLPDVTRPEGKDFSSHRLVPGTHTSVEQNHLVQ 81
E P L P + P G D + +L+PG+ V +H+++
Sbjct: 131 EEPPLPQPVAPALVPPAGGDSTVSQLIPGSEVRVTLDHIIE 171
>gi|153791982 PWWP domain containing 2A isoform a [Homo sapiens]
Length = 560
Score = 27.3 bits (59), Expect = 2.6
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 41 EWPSLTAQWLPDVTRPEGKDFSSHRLVPGTHTSVEQNHLVQ 81
E P L P + P G D + +L+PG+ V +H+++
Sbjct: 131 EEPPLPQPVAPALVPPAGGDSTVSQLIPGSEVRVTLDHIIE 171
>gi|31657129 phosphoribosylformylglycinamidine synthase [Homo
sapiens]
Length = 1338
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 31 PYDLVMTQALEWPSLTAQWLPDVTRPEGKDFSSH-RLVPGTH 71
P LV++ P +TA PD+ PEG+ + L PG H
Sbjct: 820 PGSLVISAYAVCPDITATVTPDLKHPEGRGHLLYVALSPGQH 861
>gi|109633022 mucosal vascular addressin cell adhesion molecule 1
isoform a precursor [Homo sapiens]
Length = 382
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 37 TQALEWPSLTAQWLPDVTRPEGKDFSSHRLVP---GTHT 72
T + E P T+Q PD T PE D +S P THT
Sbjct: 243 TTSPESPDTTSQEPPDTTSPEPPDKTSPEPAPQQGSTHT 281
>gi|46389556 endosulfine alpha isoform 5 [Homo sapiens]
Length = 133
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 35 VMTQALEWPSLTAQWLPDVTRPEGKDFSSHRLVPGTHTSVEQNHLVQLPSDDAQLDASHY 94
++ + E L A++ +P G DF RL G + S+ + L+ D+ Y
Sbjct: 23 ILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGDYKSLHWSVLLCADEMQKYFDSGDY 82
Query: 95 NSKKGE 100
N K +
Sbjct: 83 NMAKAK 88
>gi|46389552 endosulfine alpha isoform 2 [Homo sapiens]
Length = 133
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 35 VMTQALEWPSLTAQWLPDVTRPEGKDFSSHRLVPGTHTSVEQNHLVQLPSDDAQLDASHY 94
++ + E L A++ +P G DF RL G + S+ + L+ D+ Y
Sbjct: 27 ILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGDYKSLHWSVLLCADEMQKYFDSGDY 86
Query: 95 NSKKGE 100
N K +
Sbjct: 87 NMAKAK 92
>gi|46389550 endosulfine alpha isoform 1 [Homo sapiens]
Length = 137
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 35 VMTQALEWPSLTAQWLPDVTRPEGKDFSSHRLVPGTHTSVEQNHLVQLPSDDAQLDASHY 94
++ + E L A++ +P G DF RL G + S+ + L+ D+ Y
Sbjct: 27 ILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGDYKSLHWSVLLCADEMQKYFDSGDY 86
Query: 95 NSKKGE 100
N K +
Sbjct: 87 NMAKAK 92
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.128 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,380,416
Number of Sequences: 37866
Number of extensions: 171700
Number of successful extensions: 353
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 337
Number of HSP's gapped (non-prelim): 14
length of query: 103
length of database: 18,247,518
effective HSP length: 74
effective length of query: 29
effective length of database: 15,445,434
effective search space: 447917586
effective search space used: 447917586
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.