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Search of human proteins with 239741961
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741961 PREDICTED: hypothetical protein XP_002342363 [Homo
sapiens]
(138 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753593 PREDICTED: similar to hCG1641141 [Homo sapiens] 286 5e-78
gi|239741961 PREDICTED: hypothetical protein XP_002342363 [Homo ... 286 5e-78
gi|27477134 nucleoporin 210 [Homo sapiens] 77 6e-15
gi|117414168 nucleoporin 210kDa-like isoform 1 [Homo sapiens] 39 0.001
gi|31543543 retinoic acid induced 17 [Homo sapiens] 32 0.22
gi|239741486 PREDICTED: hypothetical protein XP_002342213 [Homo ... 30 0.63
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 28 2.4
gi|148612816 RecQ protein-like 5 isoform 1 [Homo sapiens] 28 2.4
gi|239757099 PREDICTED: hypothetical protein [Homo sapiens] 27 4.1
gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo ... 27 4.1
gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo ... 27 4.1
gi|38027923 COP9 signalosome subunit 5 [Homo sapiens] 27 5.4
gi|5453974 protein kinase N2 [Homo sapiens] 27 5.4
gi|22749049 Leber congenital amaurosis 5-like [Homo sapiens] 27 5.4
gi|169171680 PREDICTED: hypothetical protein [Homo sapiens] 27 7.0
gi|51093836 hypothetical protein LOC126859 isoform 1 [Homo sapiens] 27 7.0
gi|51093834 hypothetical protein LOC126859 isoform 2 [Homo sapiens] 27 7.0
>gi|239753593 PREDICTED: similar to hCG1641141 [Homo sapiens]
Length = 138
Score = 286 bits (731), Expect = 5e-78
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MAAHYPFVDCQLQTSPSFPRCVRTRLNSVSFASWPVPFSPDLYAKQSEILLSNHYTTSEV 60
MAAHYPFVDCQLQTSPSFPRCVRTRLNSVSFASWPVPFSPDLYAKQSEILLSNHYTTSEV
Sbjct: 1 MAAHYPFVDCQLQTSPSFPRCVRTRLNSVSFASWPVPFSPDLYAKQSEILLSNHYTTSEV 60
Query: 61 RVFGVPEVLENLECDLGRGPHPYSLGPRRKAQHVKSGSPAVLALVKKSLGSHTRSASRNP 120
RVFGVPEVLENLECDLGRGPHPYSLGPRRKAQHVKSGSPAVLALVKKSLGSHTRSASRNP
Sbjct: 61 RVFGVPEVLENLECDLGRGPHPYSLGPRRKAQHVKSGSPAVLALVKKSLGSHTRSASRNP 120
Query: 121 RRQPGASVHYLDLLQPRD 138
RRQPGASVHYLDLLQPRD
Sbjct: 121 RRQPGASVHYLDLLQPRD 138
>gi|239741961 PREDICTED: hypothetical protein XP_002342363 [Homo
sapiens]
Length = 138
Score = 286 bits (731), Expect = 5e-78
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MAAHYPFVDCQLQTSPSFPRCVRTRLNSVSFASWPVPFSPDLYAKQSEILLSNHYTTSEV 60
MAAHYPFVDCQLQTSPSFPRCVRTRLNSVSFASWPVPFSPDLYAKQSEILLSNHYTTSEV
Sbjct: 1 MAAHYPFVDCQLQTSPSFPRCVRTRLNSVSFASWPVPFSPDLYAKQSEILLSNHYTTSEV 60
Query: 61 RVFGVPEVLENLECDLGRGPHPYSLGPRRKAQHVKSGSPAVLALVKKSLGSHTRSASRNP 120
RVFGVPEVLENLECDLGRGPHPYSLGPRRKAQHVKSGSPAVLALVKKSLGSHTRSASRNP
Sbjct: 61 RVFGVPEVLENLECDLGRGPHPYSLGPRRKAQHVKSGSPAVLALVKKSLGSHTRSASRNP 120
Query: 121 RRQPGASVHYLDLLQPRD 138
RRQPGASVHYLDLLQPRD
Sbjct: 121 RRQPGASVHYLDLLQPRD 138
>gi|27477134 nucleoporin 210 [Homo sapiens]
Length = 1887
Score = 76.6 bits (187), Expect = 6e-15
Identities = 45/76 (59%), Positives = 49/76 (64%), Gaps = 21/76 (27%)
Query: 36 VPFSPDLYAKQSEILLSNHYTTSEVRVFGVPEVLENLECDLGRGPHPYSLGPRRKAQHVK 95
VPFSP L+A Q+EILLSNHYT+SE+RVFG PEVLENLE VK
Sbjct: 1685 VPFSPGLFADQAEILLSNHYTSSEIRVFGAPEVLENLE--------------------VK 1724
Query: 96 SGSPAVLALVK-KSLG 110
SGSPAVLA K KS G
Sbjct: 1725 SGSPAVLAFAKEKSFG 1740
>gi|117414168 nucleoporin 210kDa-like isoform 1 [Homo sapiens]
Length = 1888
Score = 39.3 bits (90), Expect = 0.001
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 36 VPFSPDLYAKQSEILLSNHYTTSEVRVFGVPEVLENLE 73
+PF P Y QSE++LS+ E+RV GV VL LE
Sbjct: 1690 IPFIPAFYINQSELVLSHKQDIGEIRVLGVDRVLRKLE 1727
>gi|31543543 retinoic acid induced 17 [Homo sapiens]
Length = 1067
Score = 31.6 bits (70), Expect = 0.22
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 33 SW-PVPFSPDLYAKQS-EILLSNHYTTSEVRVFGVPEVLENLECDLGRGPHPYSLGP 87
SW PVP DL+ K + + S + T +P V+E + LG GP PY L P
Sbjct: 821 SWRPVPIKSDLHIKDDPDGIPSKRFKTMSPSQMIMPNVMEMIAA-LGPGPSPYPLPP 876
>gi|239741486 PREDICTED: hypothetical protein XP_002342213 [Homo
sapiens]
Length = 233
Score = 30.0 bits (66), Expect = 0.63
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 15 SPSFPRCVRTRLNSVSFASWPVPFSPDLYAKQ 46
SPS PRC +T+L + S P+P DL Q
Sbjct: 33 SPSPPRCAKTQLTPPAIRSCPLPPEEDLLTPQ 64
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 28.1 bits (61), Expect = 2.4
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 59 EVRVFGVPEVLENLECDLGRGPHPYSLG---PR--RKAQHVKSGSPAVLALVKKS 108
++ + ++LE EC +G GP P+SL P+ + H+K S + +V+KS
Sbjct: 396 DIEIAAYRKLLEGEECRIGFGPIPFSLPEGLPKIPSVSTHIKVKSEEKIKVVEKS 450
>gi|148612816 RecQ protein-like 5 isoform 1 [Homo sapiens]
Length = 991
Score = 28.1 bits (61), Expect = 2.4
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 46 QSEILLSNHYTTSEVRVFGVPEVLENLECDLGRGPHPYSLGPRRKAQHVK----SGSPAV 101
Q+E L +T R G PEV D +G P S ++Q K S P+V
Sbjct: 820 QTEECLRERPSTCPPRDQGTPEVQPTPAKDTWKGKRPRSQQENPESQPQKRPRPSAKPSV 879
Query: 102 LALVKKSLGSHTRSASRNPRRQ 123
+A VK S+ S + + NP Q
Sbjct: 880 VAEVKGSV-SASEQGTLNPTAQ 900
>gi|239757099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 27.3 bits (59), Expect = 4.1
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 77 GRGPHPYSLGPRRKAQHVKSGSPAVLALVK-KSLGSHTRSASRNPRRQPGASVH 129
G H G R++ + S +P + A + K+LG R +PR P A H
Sbjct: 35 GTAGHDLRKGHRKQLEDTGSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAH 88
>gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo
sapiens]
Length = 208
Score = 27.3 bits (59), Expect = 4.1
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 77 GRGPHPYSLGPRRKAQHVKSGSPAVLALVK-KSLGSHTRSASRNPRRQPGASVH 129
G H G R++ + S +P + A + K+LG R +PR P A H
Sbjct: 35 GTAGHDLRKGHRKQLEDTGSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAH 88
>gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo
sapiens]
Length = 208
Score = 27.3 bits (59), Expect = 4.1
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 77 GRGPHPYSLGPRRKAQHVKSGSPAVLALVK-KSLGSHTRSASRNPRRQPGASVH 129
G H G R++ + S +P + A + K+LG R +PR P A H
Sbjct: 35 GTAGHDLRKGHRKQLEDTGSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAH 88
>gi|38027923 COP9 signalosome subunit 5 [Homo sapiens]
Length = 334
Score = 26.9 bits (58), Expect = 5.4
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 47 SEILLSNHYTTSEVRVFGVPEVLENLECDLGRG 79
S +L + YTT +V F + E LE E LGRG
Sbjct: 253 SSLLTNADYTTGQV--FDLSEKLEQSEAQLGRG 283
>gi|5453974 protein kinase N2 [Homo sapiens]
Length = 984
Score = 26.9 bits (58), Expect = 5.4
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 10/47 (21%)
Query: 36 VPFSPDLYAKQSEILLSNHYTTS----------EVRVFGVPEVLENL 72
V SP L +QS I N Y+T EVR+ G ++LEN+
Sbjct: 299 VAASPTLSPRQSMISTQNQYSTLSKPAALTGTLEVRLMGCQDILENV 345
>gi|22749049 Leber congenital amaurosis 5-like [Homo sapiens]
Length = 670
Score = 26.9 bits (58), Expect = 5.4
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 40 PDLYAKQSEILLSNHYTTSEVRVFGVPEVLENLECDLGRGPHPYSLGPRRKAQH 93
P+ + Q ++L+ + S R ++ LG+G PY+ GP R+ +H
Sbjct: 478 PERESNQEDVLVREKFKRSMQR--------NGVDDTLGKGTAPYTKGPLRQRRH 523
>gi|169171680 PREDICTED: hypothetical protein [Homo sapiens]
Length = 226
Score = 26.6 bits (57), Expect = 7.0
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 80 PHPYSLGPRRKAQH----VKSGSPAVLALVKKSLGS-HTRSASRNPRRQPGASVHYL 131
PHP + P R A H V SG P L + S+GS H +ASR+ G H L
Sbjct: 136 PHPAAHPPERTAPHLRGPVASGLPRGL---RVSVGSPHVSAASRSSPPLAGFCFHLL 189
>gi|51093836 hypothetical protein LOC126859 isoform 1 [Homo sapiens]
Length = 1012
Score = 26.6 bits (57), Expect = 7.0
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 17 SFPRCVRTRLNS----------VSFASWPVPFSPDLYAKQSEILLSNHYTTSEVRVFGVP 66
S P+ T LNS VS A P+L K++ + S TS F
Sbjct: 2 SLPKTPSTPLNSTSTSESKKLKVSVAKEGTRGLPELKEKKNMVDRSKLLPTSLQNEFIPK 61
Query: 67 EVLENLECDLGRGPHPYSLGPRRKAQHVKSGSPAVL 102
EVL +L GP P +L P +K + K P ++
Sbjct: 62 EVLLSLTYAANAGPCPENLLPPKKIKTPKGTLPRLV 97
>gi|51093834 hypothetical protein LOC126859 isoform 2 [Homo sapiens]
Length = 938
Score = 26.6 bits (57), Expect = 7.0
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 17 SFPRCVRTRLNS----------VSFASWPVPFSPDLYAKQSEILLSNHYTTSEVRVFGVP 66
S P+ T LNS VS A P+L K++ + S TS F
Sbjct: 2 SLPKTPSTPLNSTSTSESKKLKVSVAKEGTRGLPELKEKKNMVDRSKLLPTSLQNEFIPK 61
Query: 67 EVLENLECDLGRGPHPYSLGPRRKAQHVKSGSPAVL 102
EVL +L GP P +L P +K + K P ++
Sbjct: 62 EVLLSLTYAANAGPCPENLLPPKKIKTPKGTLPRLV 97
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,039,637
Number of Sequences: 37866
Number of extensions: 265561
Number of successful extensions: 599
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 589
Number of HSP's gapped (non-prelim): 19
length of query: 138
length of database: 18,247,518
effective HSP length: 91
effective length of query: 47
effective length of database: 14,801,712
effective search space: 695680464
effective search space used: 695680464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.