Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 116268113
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116268113 transmembrane protein 99 [Homo sapiens]
(258 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116268113 transmembrane protein 99 [Homo sapiens] 540 e-154
gi|239757968 PREDICTED: hypothetical protein [Homo sapiens] 47 2e-05
gi|239747023 PREDICTED: hypothetical protein XP_002343907 [Homo ... 47 2e-05
gi|239747021 PREDICTED: hypothetical protein XP_002343906 [Homo ... 47 2e-05
gi|34761064 catalytic phosphatidylinositol 3-kinase 3 [Homo sapi... 32 0.55
gi|156564359 hypothetical protein LOC113278 [Homo sapiens] 32 0.55
gi|12056463 coagulation factor VIII-associated protein [Homo sap... 31 0.93
gi|56090586 coagulation factor VIII-associated (intronic transcr... 31 0.93
gi|56090588 coagulation factor VIII-associated (intronic transcr... 31 0.93
gi|4826776 Janus kinase 2 [Homo sapiens] 30 2.1
gi|13376060 hypothetical protein LOC79794 [Homo sapiens] 29 3.6
gi|109715827 zinc finger protein 35 [Homo sapiens] 28 6.1
gi|153791313 cytochrome oxidase deficient homolog 2 [Homo sapiens] 28 6.1
gi|153792230 hypothetical protein LOC57670 [Homo sapiens] 28 6.1
gi|37574603 zinc finger protein 256 [Homo sapiens] 28 6.1
gi|189571667 zinc finger protein 696 [Homo sapiens] 28 7.9
gi|7019335 hypothetical protein LOC745 isoform 1 [Homo sapiens] 28 7.9
gi|188528652 hypothetical protein LOC745 isoform 2 [Homo sapiens] 28 7.9
>gi|116268113 transmembrane protein 99 [Homo sapiens]
Length = 258
Score = 540 bits (1390), Expect = e-154
Identities = 258/258 (100%), Positives = 258/258 (100%)
Query: 1 MVGILPLCCSGCVPSLCCSSYVPSVAPTAAHSVRVPHSAGHCGQRVLACSLPQVFLKPWI 60
MVGILPLCCSGCVPSLCCSSYVPSVAPTAAHSVRVPHSAGHCGQRVLACSLPQVFLKPWI
Sbjct: 1 MVGILPLCCSGCVPSLCCSSYVPSVAPTAAHSVRVPHSAGHCGQRVLACSLPQVFLKPWI 60
Query: 61 FVEHFSSWLSLELFSFLRYLGTLLCACGHRLREGLLLPCLLGVGSWLLFNNWTGGSWFSL 120
FVEHFSSWLSLELFSFLRYLGTLLCACGHRLREGLLLPCLLGVGSWLLFNNWTGGSWFSL
Sbjct: 61 FVEHFSSWLSLELFSFLRYLGTLLCACGHRLREGLLLPCLLGVGSWLLFNNWTGGSWFSL 120
Query: 121 HLQQVSLSQGSHVAAFLPEAIGPGVPVPVSGESTSAQQSHAGWQLSAEADACPSVLYSEV 180
HLQQVSLSQGSHVAAFLPEAIGPGVPVPVSGESTSAQQSHAGWQLSAEADACPSVLYSEV
Sbjct: 121 HLQQVSLSQGSHVAAFLPEAIGPGVPVPVSGESTSAQQSHAGWQLSAEADACPSVLYSEV 180
Query: 181 LEWNKNINTYTSFHDFCLILGIFLFCFVLAVIGLPYIKPGLSLSVALLWQSLILLSSLVQ 240
LEWNKNINTYTSFHDFCLILGIFLFCFVLAVIGLPYIKPGLSLSVALLWQSLILLSSLVQ
Sbjct: 181 LEWNKNINTYTSFHDFCLILGIFLFCFVLAVIGLPYIKPGLSLSVALLWQSLILLSSLVQ 240
Query: 241 QDSQVHTWGCLFSTFTST 258
QDSQVHTWGCLFSTFTST
Sbjct: 241 QDSQVHTWGCLFSTFTST 258
>gi|239757968 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 46.6 bits (109), Expect = 2e-05
Identities = 48/125 (38%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 27 PTAAHSVRVPHSAGHCGQRVLACSLPQVFLKPWIFVEHFSSWLSL-ELFSFLR---YLGT 82
P AA + P AG G+ LA S PQV +P + SS +SL EL R
Sbjct: 29 PAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPSLSQPLSSRVSLHELLLPSRPPWVTHL 88
Query: 83 LLCACGHRLREGLLLPCLLGVGSWLLFNNWTGGSWFSLHLQQVSLSQGSHVAAFLPEAIG 142
LL A G RLR GL L CLLG+G + GS HL Q+++SQ S +
Sbjct: 89 LLRATGARLRGGLPLSCLLGLG------RRSRGSRLWTHLPQLNVSQRSTNSRL------ 136
Query: 143 PGVPV 147
PG+PV
Sbjct: 137 PGLPV 141
>gi|239747023 PREDICTED: hypothetical protein XP_002343907 [Homo
sapiens]
Length = 157
Score = 46.6 bits (109), Expect = 2e-05
Identities = 48/125 (38%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 27 PTAAHSVRVPHSAGHCGQRVLACSLPQVFLKPWIFVEHFSSWLSL-ELFSFLR---YLGT 82
P AA + P AG G+ LA S PQV +P + SS +SL EL R
Sbjct: 29 PAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPSLSQPLSSRVSLHELLLPSRPPWVTHL 88
Query: 83 LLCACGHRLREGLLLPCLLGVGSWLLFNNWTGGSWFSLHLQQVSLSQGSHVAAFLPEAIG 142
LL A G RLR GL L CLLG+G + GS HL Q+++SQ S +
Sbjct: 89 LLRATGARLRGGLPLSCLLGLG------RRSRGSRLWTHLPQLNVSQRSTNSRL------ 136
Query: 143 PGVPV 147
PG+PV
Sbjct: 137 PGLPV 141
>gi|239747021 PREDICTED: hypothetical protein XP_002343906 [Homo
sapiens]
Length = 157
Score = 46.6 bits (109), Expect = 2e-05
Identities = 48/125 (38%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 27 PTAAHSVRVPHSAGHCGQRVLACSLPQVFLKPWIFVEHFSSWLSL-ELFSFLR---YLGT 82
P AA + P AG G+ LA S PQV +P + SS +SL EL R
Sbjct: 29 PAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPSLSQPLSSRVSLHELLLPSRPPWVTHL 88
Query: 83 LLCACGHRLREGLLLPCLLGVGSWLLFNNWTGGSWFSLHLQQVSLSQGSHVAAFLPEAIG 142
LL A G RLR GL L CLLG+G + GS HL Q+++SQ S +
Sbjct: 89 LLRATGARLRGGLPLSCLLGLG------RRSRGSRLWTHLPQLNVSQRSTNSRL------ 136
Query: 143 PGVPV 147
PG+PV
Sbjct: 137 PGLPV 141
>gi|34761064 catalytic phosphatidylinositol 3-kinase 3 [Homo
sapiens]
Length = 887
Score = 32.0 bits (71), Expect = 0.55
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 112 WTGGSWFSLHLQQVSLSQGSHVAAFLPEAIGPGVPVPVSGESTS 155
W W L ++ L + + VA + + GPG VPV G + S
Sbjct: 85 WNWNEWLKLPVKYPDLPRNAQVALTIWDVYGPGKAVPVGGTTVS 128
>gi|156564359 hypothetical protein LOC113278 [Homo sapiens]
Length = 469
Score = 32.0 bits (71), Expect = 0.55
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 96 LLPCLLGVGSWLLFNNWTGGSWFSLHLQQVSLSQGSHVAAFLPEAI 141
LL C+ G+GSW+ N G W L L + L +G ++ ++L I
Sbjct: 7 LLVCVFGMGSWVTIN----GLWVELPLLVMELPEGWYLPSYLTVVI 48
>gi|12056463 coagulation factor VIII-associated protein [Homo
sapiens]
Length = 371
Score = 31.2 bits (69), Expect = 0.93
Identities = 30/93 (32%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 69 LSLELFSFLRYLGTLLCACGHRLREGLL------LPCLLGVGS----WLLFNNWTGGSWF 118
L LEL + LR LG A GH R L L L +G LL ++TG
Sbjct: 144 LCLELAAALRDLGQPAAAAGHFQRAAQLQLPQLPLAALQALGEAASCQLLARDYTGALAV 203
Query: 119 SLHLQQVSLSQGSHVAAFLPEAIGPGVPVPVSG 151
+Q+++ GSH LP P P P G
Sbjct: 204 FTRMQRLAREHGSHPVQSLPP---PPPPAPQPG 233
>gi|56090586 coagulation factor VIII-associated (intronic
transcript) 3 [Homo sapiens]
Length = 371
Score = 31.2 bits (69), Expect = 0.93
Identities = 30/93 (32%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 69 LSLELFSFLRYLGTLLCACGHRLREGLL------LPCLLGVGS----WLLFNNWTGGSWF 118
L LEL + LR LG A GH R L L L +G LL ++TG
Sbjct: 144 LCLELAAALRDLGQPAAAAGHFQRAAQLQLPQLPLAALQALGEAASCQLLARDYTGALAV 203
Query: 119 SLHLQQVSLSQGSHVAAFLPEAIGPGVPVPVSG 151
+Q+++ GSH LP P P P G
Sbjct: 204 FTRMQRLAREHGSHPVQSLPP---PPPPAPQPG 233
>gi|56090588 coagulation factor VIII-associated (intronic
transcript) 2 [Homo sapiens]
Length = 371
Score = 31.2 bits (69), Expect = 0.93
Identities = 30/93 (32%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 69 LSLELFSFLRYLGTLLCACGHRLREGLL------LPCLLGVGS----WLLFNNWTGGSWF 118
L LEL + LR LG A GH R L L L +G LL ++TG
Sbjct: 144 LCLELAAALRDLGQPAAAAGHFQRAAQLQLPQLPLAALQALGEAASCQLLARDYTGALAV 203
Query: 119 SLHLQQVSLSQGSHVAAFLPEAIGPGVPVPVSG 151
+Q+++ GSH LP P P P G
Sbjct: 204 FTRMQRLAREHGSHPVQSLPP---PPPPAPQPG 233
>gi|4826776 Janus kinase 2 [Homo sapiens]
Length = 1132
Score = 30.0 bits (66), Expect = 2.1
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 170 DACPSVLYSEVLE-WNKNINTYTSFHDFCL 198
D CP +Y + E WN N+N SF D L
Sbjct: 1092 DGCPDEIYMIMTECWNNNVNQRPSFRDLAL 1121
>gi|13376060 hypothetical protein LOC79794 [Homo sapiens]
Length = 205
Score = 29.3 bits (64), Expect = 3.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 8 CCSGCVPSLCCSSY 21
CC GC P+ CCS+Y
Sbjct: 115 CCDGCWPNGCCSAY 128
>gi|109715827 zinc finger protein 35 [Homo sapiens]
Length = 527
Score = 28.5 bits (62), Expect = 6.1
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 3 GILPLCCSGCVPSLCCSSYVPSVAPTAAHSVRVPHSAGHCGQ 44
G LP C+ C + CSSY+ + H+ P++ CG+
Sbjct: 442 GDLPYVCNECGKAFTCSSYL--LIHQRIHNGEKPYTCNECGK 481
>gi|153791313 cytochrome oxidase deficient homolog 2 [Homo sapiens]
Length = 266
Score = 28.5 bits (62), Expect = 6.1
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 88 GHRLREGLLLPCLLGVGSWLLFNNWTGGSWFSLHLQQVSLSQGSHVAAFLPEAIGPG 144
G LR LL+ L G G GG+W +L ++ L Q A A+G G
Sbjct: 54 GPGLRTRLLITGLFGAG--------LGGAWLALRAEKERLQQQKRTEALRQAAVGQG 102
>gi|153792230 hypothetical protein LOC57670 [Homo sapiens]
Length = 1884
Score = 28.5 bits (62), Expect = 6.1
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 126 SLSQGSHVAAFL------PEAIGPGVPVPVSGESTSAQQSHAGWQLSAEADACPSVLYSE 179
SL++G FL P+ +G G+ +P+ +Q W SA+ + + S+
Sbjct: 222 SLTEGVETTLFLSSRSLMPQPLGDGITIPLPSLGEVSQPPEEVWATSADRYTDVTTVLSQ 281
Query: 180 VLEWNKNINTY 190
LE + TY
Sbjct: 282 SLEETISPRTY 292
>gi|37574603 zinc finger protein 256 [Homo sapiens]
Length = 627
Score = 28.5 bits (62), Expect = 6.1
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 3 GILPLCCSGCVPSLCCSSYVPSVAPTAAHSVRVPHSAGHCGQ 44
G P CS C S C SY+ ++ H+ P+ G CG+
Sbjct: 459 GERPYECSECGKSFTCKSYL--ISHWKVHTGARPYECGECGK 498
>gi|189571667 zinc finger protein 696 [Homo sapiens]
Length = 374
Score = 28.1 bits (61), Expect = 7.9
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 3 GILPLCCSGCVPSLCCSSYVPSVAPTAAHSVRVPHSAGHCGQRVLACS 50
G P C C + SS++ H+ PH GHCG+ A S
Sbjct: 289 GERPFACQDCGRAFSRSSFLRE--HRRIHTGEKPHQCGHCGRAFRALS 334
>gi|7019335 hypothetical protein LOC745 isoform 1 [Homo sapiens]
Length = 1111
Score = 28.1 bits (61), Expect = 7.9
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 2 VGILPLCCSGCVPSLCCSSYVPSVAPTAAHSVRVPHSAGH 41
V L +C S P +CCSS P+ PT S+ + GH
Sbjct: 836 VRTLDMCSSHPCPVICCSS--PTTNPTTGPSLGPSFNPGH 873
>gi|188528652 hypothetical protein LOC745 isoform 2 [Homo sapiens]
Length = 1151
Score = 28.1 bits (61), Expect = 7.9
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 2 VGILPLCCSGCVPSLCCSSYVPSVAPTAAHSVRVPHSAGH 41
V L +C S P +CCSS P+ PT S+ + GH
Sbjct: 871 VRTLDMCSSHPCPVICCSS--PTTNPTTGPSLGPSFNPGH 908
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.138 0.467
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,946,091
Number of Sequences: 37866
Number of extensions: 499496
Number of successful extensions: 1917
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1900
Number of HSP's gapped (non-prelim): 21
length of query: 258
length of database: 18,247,518
effective HSP length: 100
effective length of query: 158
effective length of database: 14,460,918
effective search space: 2284825044
effective search space used: 2284825044
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.