Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239740912

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239740912 PREDICTED: hypothetical protein XP_002344084 [Homo
sapiens]
         (240 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754279 PREDICTED: hypothetical protein XP_002345940 [Homo ...   517   e-147
gi|239748812 PREDICTED: hypothetical protein XP_002346807 [Homo ...   517   e-147
gi|239740912 PREDICTED: hypothetical protein XP_002344084 [Homo ...   517   e-147
gi|239740849 PREDICTED: hypothetical protein XP_002344051 [Homo ...   514   e-146
gi|239754376 PREDICTED: similar to putative p150 [Homo sapiens]       250   9e-67
gi|239748989 PREDICTED: hypothetical protein XP_002346845 [Homo ...   250   9e-67
gi|239743009 PREDICTED: hypothetical protein XP_002342695 [Homo ...   250   9e-67
gi|239752486 PREDICTED: hypothetical protein XP_002347335 [Homo ...   100   1e-21
gi|157168360 acetylserotonin O-methyltransferase [Homo sapiens]        56   2e-08
gi|239754856 PREDICTED: p150-like [Homo sapiens]                       51   8e-07
gi|239749395 PREDICTED: p150-like [Homo sapiens]                       51   8e-07
gi|239743530 PREDICTED: p150-like [Homo sapiens]                       51   8e-07
gi|23238222 COP9 constitutive photomorphogenic homolog subunit 3...    29   4.2  
gi|61744454 retinal G-protein coupled receptor isoform 2 [Homo s...    28   7.1  
gi|61744452 retinal G-protein coupled receptor isoform 3 [Homo s...    28   7.1  
gi|21361329 retinal G-protein coupled receptor isoform 1 [Homo s...    28   7.1  

>gi|239754279 PREDICTED: hypothetical protein XP_002345940 [Homo
           sapiens]
          Length = 240

 Score =  517 bits (1331), Expect = e-147
 Identities = 240/240 (100%), Positives = 240/240 (100%)

Query: 1   MGENFCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKC 60
           MGENFCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKC
Sbjct: 1   MGENFCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKC 60

Query: 61  SSSLAIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWK 120
           SSSLAIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWK
Sbjct: 61  SSSLAIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWK 120

Query: 121 SVWRFLRDLELEIPFDPAIPLLGIYPKDYKTCCYKDTCTRMFIVALFTIAKTWNQPKCPT 180
           SVWRFLRDLELEIPFDPAIPLLGIYPKDYKTCCYKDTCTRMFIVALFTIAKTWNQPKCPT
Sbjct: 121 SVWRFLRDLELEIPFDPAIPLLGIYPKDYKTCCYKDTCTRMFIVALFTIAKTWNQPKCPT 180

Query: 181 MIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLETIILSKLSQGQKTKHHMFSLIDGN 240
           MIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLETIILSKLSQGQKTKHHMFSLIDGN
Sbjct: 181 MIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLETIILSKLSQGQKTKHHMFSLIDGN 240


>gi|239748812 PREDICTED: hypothetical protein XP_002346807 [Homo
           sapiens]
          Length = 240

 Score =  517 bits (1331), Expect = e-147
 Identities = 240/240 (100%), Positives = 240/240 (100%)

Query: 1   MGENFCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKC 60
           MGENFCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKC
Sbjct: 1   MGENFCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKC 60

Query: 61  SSSLAIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWK 120
           SSSLAIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWK
Sbjct: 61  SSSLAIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWK 120

Query: 121 SVWRFLRDLELEIPFDPAIPLLGIYPKDYKTCCYKDTCTRMFIVALFTIAKTWNQPKCPT 180
           SVWRFLRDLELEIPFDPAIPLLGIYPKDYKTCCYKDTCTRMFIVALFTIAKTWNQPKCPT
Sbjct: 121 SVWRFLRDLELEIPFDPAIPLLGIYPKDYKTCCYKDTCTRMFIVALFTIAKTWNQPKCPT 180

Query: 181 MIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLETIILSKLSQGQKTKHHMFSLIDGN 240
           MIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLETIILSKLSQGQKTKHHMFSLIDGN
Sbjct: 181 MIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLETIILSKLSQGQKTKHHMFSLIDGN 240


>gi|239740912 PREDICTED: hypothetical protein XP_002344084 [Homo
           sapiens]
          Length = 240

 Score =  517 bits (1331), Expect = e-147
 Identities = 240/240 (100%), Positives = 240/240 (100%)

Query: 1   MGENFCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKC 60
           MGENFCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKC
Sbjct: 1   MGENFCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKC 60

Query: 61  SSSLAIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWK 120
           SSSLAIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWK
Sbjct: 61  SSSLAIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWK 120

Query: 121 SVWRFLRDLELEIPFDPAIPLLGIYPKDYKTCCYKDTCTRMFIVALFTIAKTWNQPKCPT 180
           SVWRFLRDLELEIPFDPAIPLLGIYPKDYKTCCYKDTCTRMFIVALFTIAKTWNQPKCPT
Sbjct: 121 SVWRFLRDLELEIPFDPAIPLLGIYPKDYKTCCYKDTCTRMFIVALFTIAKTWNQPKCPT 180

Query: 181 MIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLETIILSKLSQGQKTKHHMFSLIDGN 240
           MIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLETIILSKLSQGQKTKHHMFSLIDGN
Sbjct: 181 MIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLETIILSKLSQGQKTKHHMFSLIDGN 240


>gi|239740849 PREDICTED: hypothetical protein XP_002344051 [Homo
           sapiens]
          Length = 240

 Score =  514 bits (1324), Expect = e-146
 Identities = 239/240 (99%), Positives = 239/240 (99%)

Query: 1   MGENFCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKC 60
           MGENFCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKC
Sbjct: 1   MGENFCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKC 60

Query: 61  SSSLAIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWK 120
           SSSLAIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWK
Sbjct: 61  SSSLAIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWK 120

Query: 121 SVWRFLRDLELEIPFDPAIPLLGIYPKDYKTCCYKDTCTRMFIVALFTIAKTWNQPKCPT 180
           SVWRFLRDLELEIPFDPAIPLL IYPKDYKTCCYKDTCTRMFIVALFTIAKTWNQPKCPT
Sbjct: 121 SVWRFLRDLELEIPFDPAIPLLDIYPKDYKTCCYKDTCTRMFIVALFTIAKTWNQPKCPT 180

Query: 181 MIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLETIILSKLSQGQKTKHHMFSLIDGN 240
           MIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLETIILSKLSQGQKTKHHMFSLIDGN
Sbjct: 181 MIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLETIILSKLSQGQKTKHHMFSLIDGN 240


>gi|239754376 PREDICTED: similar to putative p150 [Homo sapiens]
          Length = 295

 Score =  250 bits (638), Expect = 9e-67
 Identities = 114/126 (90%), Positives = 117/126 (92%)

Query: 5   FCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKCSSSL 64
           F  YSSDKGLISRIYNE KQIYKKKTNNPI KWAKDMNRHFSKEDIY AK+HMKKCS SL
Sbjct: 170 FATYSSDKGLISRIYNEFKQIYKKKTNNPIKKWAKDMNRHFSKEDIYAAKKHMKKCSPSL 229

Query: 65  AIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWKSVWR 124
           AI EMQIKTTMR+HLT VRMA+IKKSGNNRCWRGCGEIGTLLHCWWDCKL QPLWKSVWR
Sbjct: 230 AIREMQIKTTMRYHLTPVRMAVIKKSGNNRCWRGCGEIGTLLHCWWDCKLVQPLWKSVWR 289

Query: 125 FLRDLE 130
           FLRDLE
Sbjct: 290 FLRDLE 295


>gi|239748989 PREDICTED: hypothetical protein XP_002346845 [Homo
           sapiens]
          Length = 295

 Score =  250 bits (638), Expect = 9e-67
 Identities = 114/126 (90%), Positives = 117/126 (92%)

Query: 5   FCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKCSSSL 64
           F  YSSDKGLISRIYNE KQIYKKKTNNPI KWAKDMNRHFSKEDIY AK+HMKKCS SL
Sbjct: 170 FATYSSDKGLISRIYNEFKQIYKKKTNNPIKKWAKDMNRHFSKEDIYAAKKHMKKCSPSL 229

Query: 65  AIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWKSVWR 124
           AI EMQIKTTMR+HLT VRMA+IKKSGNNRCWRGCGEIGTLLHCWWDCKL QPLWKSVWR
Sbjct: 230 AIREMQIKTTMRYHLTPVRMAVIKKSGNNRCWRGCGEIGTLLHCWWDCKLVQPLWKSVWR 289

Query: 125 FLRDLE 130
           FLRDLE
Sbjct: 290 FLRDLE 295


>gi|239743009 PREDICTED: hypothetical protein XP_002342695 [Homo
           sapiens]
          Length = 295

 Score =  250 bits (638), Expect = 9e-67
 Identities = 114/126 (90%), Positives = 117/126 (92%)

Query: 5   FCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKCSSSL 64
           F  YSSDKGLISRIYNE KQIYKKKTNNPI KWAKDMNRHFSKEDIY AK+HMKKCS SL
Sbjct: 170 FATYSSDKGLISRIYNEFKQIYKKKTNNPIKKWAKDMNRHFSKEDIYAAKKHMKKCSPSL 229

Query: 65  AIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWKSVWR 124
           AI EMQIKTTMR+HLT VRMA+IKKSGNNRCWRGCGEIGTLLHCWWDCKL QPLWKSVWR
Sbjct: 230 AIREMQIKTTMRYHLTPVRMAVIKKSGNNRCWRGCGEIGTLLHCWWDCKLVQPLWKSVWR 289

Query: 125 FLRDLE 130
           FLRDLE
Sbjct: 290 FLRDLE 295


>gi|239752486 PREDICTED: hypothetical protein XP_002347335 [Homo
           sapiens]
          Length = 137

 Score =  100 bits (248), Expect = 1e-21
 Identities = 54/89 (60%), Positives = 66/89 (74%), Gaps = 4/89 (4%)

Query: 7   IYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKCSSSLAI 66
           IY SDKGLI RIY E  QIYKKK N+   K +K   +  +KEDIY A  H+K+ +SSL I
Sbjct: 53  IYPSDKGLICRIYKE--QIYKKKKNH--QKVSKGYEQTLTKEDIYRANEHVKQSTSSLVI 108

Query: 67  GEMQIKTTMRFHLTLVRMAIIKKSGNNRC 95
            EM+IKTTMR++LT +RMAI+KKSG NRC
Sbjct: 109 REMEIKTTMRYNLTPLRMAIVKKSGKNRC 137


>gi|157168360 acetylserotonin O-methyltransferase [Homo sapiens]
          Length = 373

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 26/30 (86%), Positives = 28/30 (93%)

Query: 210 GTWMKLETIILSKLSQGQKTKHHMFSLIDG 239
           GTW+KLETIILSKLSQGQKTKH +FSLI G
Sbjct: 188 GTWIKLETIILSKLSQGQKTKHRVFSLIGG 217


>gi|239754856 PREDICTED: p150-like [Homo sapiens]
          Length = 262

 Score = 51.2 bits (121), Expect = 8e-07
 Identities = 24/26 (92%), Positives = 24/26 (92%)

Query: 5   FCIYSSDKGLISRIYNELKQIYKKKT 30
           F  YSSDKGLISRIYNELKQIYKKKT
Sbjct: 228 FATYSSDKGLISRIYNELKQIYKKKT 253


>gi|239749395 PREDICTED: p150-like [Homo sapiens]
          Length = 262

 Score = 51.2 bits (121), Expect = 8e-07
 Identities = 24/26 (92%), Positives = 24/26 (92%)

Query: 5   FCIYSSDKGLISRIYNELKQIYKKKT 30
           F  YSSDKGLISRIYNELKQIYKKKT
Sbjct: 228 FATYSSDKGLISRIYNELKQIYKKKT 253


>gi|239743530 PREDICTED: p150-like [Homo sapiens]
          Length = 262

 Score = 51.2 bits (121), Expect = 8e-07
 Identities = 24/26 (92%), Positives = 24/26 (92%)

Query: 5   FCIYSSDKGLISRIYNELKQIYKKKT 30
           F  YSSDKGLISRIYNELKQIYKKKT
Sbjct: 228 FATYSSDKGLISRIYNELKQIYKKKT 253


>gi|23238222 COP9 constitutive photomorphogenic homolog subunit 3
           [Homo sapiens]
          Length = 423

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 9/74 (12%)

Query: 15  ISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHM---KKCSSSLAIGEMQI 71
           +S  Y+EL Q+Y   TNNP ++    +N+H    + +T   +M   K+C SSL    +Q 
Sbjct: 256 LSNAYHELAQVY--STNNP-SELRNLVNKH---SETFTRDNNMGLVKQCLSSLYKKNIQR 309

Query: 72  KTTMRFHLTLVRMA 85
            T     L+L  MA
Sbjct: 310 LTKTFLTLSLQDMA 323


>gi|61744454 retinal G-protein coupled receptor isoform 2 [Homo
           sapiens]
          Length = 291

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 112 CKLAQPLWKSVWRFLRDLELEIPFDPAIPLLGIYPKDYK---TCCYKDTC--TRMFIVAL 166
           C  +Q  W S    +  + L   F  A+PLLG    DY+   TCC  D     R F   L
Sbjct: 118 CTRSQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSFL 177

Query: 167 FTIA 170
           FT++
Sbjct: 178 FTMS 181


>gi|61744452 retinal G-protein coupled receptor isoform 3 [Homo
           sapiens]
          Length = 253

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 112 CKLAQPLWKSVWRFLRDLELEIPFDPAIPLLGIYPKDYK---TCCYKDTC--TRMFIVAL 166
           C  +Q  W S    +  + L   F  A+PLLG    DY+   TCC  D     R F   L
Sbjct: 118 CTRSQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSFL 177

Query: 167 FTIA 170
           FT++
Sbjct: 178 FTMS 181


>gi|21361329 retinal G-protein coupled receptor isoform 1 [Homo
           sapiens]
          Length = 295

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 112 CKLAQPLWKSVWRFLRDLELEIPFDPAIPLLGIYPKDYK---TCCYKDTC--TRMFIVAL 166
           C  +Q  W S    +  + L   F  A+PLLG    DY+   TCC  D     R F   L
Sbjct: 122 CTRSQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSFL 181

Query: 167 FTIA 170
           FT++
Sbjct: 182 FTMS 185


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.137    0.461 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,004,816
Number of Sequences: 37866
Number of extensions: 368674
Number of successful extensions: 888
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 875
Number of HSP's gapped (non-prelim): 16
length of query: 240
length of database: 18,247,518
effective HSP length: 99
effective length of query: 141
effective length of database: 14,498,784
effective search space: 2044328544
effective search space used: 2044328544
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press