Search of human proteins with 239582759

Search of human proteins with 239582759

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239582759 Acr formation associated factor isoform 2 [Homo
sapiens]
         (265 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239582759 Acr formation associated factor isoform 2 [Homo sap...   528   e-150
gi|239582757 Acr formation associated factor isoform 1 [Homo sap...   510   e-145
gi|89274169 cytokine induced apoptosis inhibitor 1 [Homo sapiens]      32   0.44 
gi|24430146 nucleoporin 153kDa [Homo sapiens]                          31   0.98 
gi|13540602 TGF-beta induced apoptosis protein 12 [Homo sapiens]       31   0.98 
gi|58530876 melanoma antigen family C, 1 [Homo sapiens]                29   3.7  
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]             29   3.7  
gi|56605998 EP300 interacting inhibitor of differentiation 3 [Ho...    29   3.7  
gi|6005948 WW domain-containing binding protein 4 [Homo sapiens]       29   4.8  
gi|126116589 fibrocystin L [Homo sapiens]                              29   4.8  
gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens]       28   8.3  
gi|31377639 sialic acid binding Ig-like lectin 10 [Homo sapiens]       28   8.3  

>gi|239582759 Acr formation associated factor isoform 2 [Homo
           sapiens]
          Length = 265

 Score =  528 bits (1361), Expect = e-150
 Identities = 265/265 (100%), Positives = 265/265 (100%)

Query: 1   MNFILFIFIPGVFSLKSSTLKPTIEALPNVLPLNEDVNKQEEKNEDHTPNYAPANEKNGN 60
           MNFILFIFIPGVFSLKSSTLKPTIEALPNVLPLNEDVNKQEEKNEDHTPNYAPANEKNGN
Sbjct: 1   MNFILFIFIPGVFSLKSSTLKPTIEALPNVLPLNEDVNKQEEKNEDHTPNYAPANEKNGN 60

Query: 61  YYKDIKQYVFTTQNPNGTESEISVRATTDLNFALKNGSTPNVPAFWTMLAKAINGTAVVM 120
           YYKDIKQYVFTTQNPNGTESEISVRATTDLNFALKNGSTPNVPAFWTMLAKAINGTAVVM
Sbjct: 61  YYKDIKQYVFTTQNPNGTESEISVRATTDLNFALKNGSTPNVPAFWTMLAKAINGTAVVM 120

Query: 121 DDKDQLFHPIPESDVNATQGENQPDLEDLKIKIMLGISLMTLLLFVVLLAFCSATLYKLR 180
           DDKDQLFHPIPESDVNATQGENQPDLEDLKIKIMLGISLMTLLLFVVLLAFCSATLYKLR
Sbjct: 121 DDKDQLFHPIPESDVNATQGENQPDLEDLKIKIMLGISLMTLLLFVVLLAFCSATLYKLR 180

Query: 181 HLSYKSCESQYSVNPELATMSYFHPSEGVSDTSFSKSAESSTFLGTTSSDMRRSGTRTSE 240
           HLSYKSCESQYSVNPELATMSYFHPSEGVSDTSFSKSAESSTFLGTTSSDMRRSGTRTSE
Sbjct: 181 HLSYKSCESQYSVNPELATMSYFHPSEGVSDTSFSKSAESSTFLGTTSSDMRRSGTRTSE 240

Query: 241 SKIMTDIISIGSDNEMHENDESVTR 265
           SKIMTDIISIGSDNEMHENDESVTR
Sbjct: 241 SKIMTDIISIGSDNEMHENDESVTR 265


>gi|239582757 Acr formation associated factor isoform 1 [Homo
           sapiens]
          Length = 294

 Score =  510 bits (1314), Expect = e-145
 Identities = 264/294 (89%), Positives = 264/294 (89%), Gaps = 29/294 (9%)

Query: 1   MNFILFIFIPGVFSLKSSTLKPTIEALPNVLPLNEDVNKQEEKNEDHTPNYAPANEKNGN 60
           MNFILFIFIPGVFSLKSSTLKPTIEALPNVLPLNEDVNKQEEKNEDHTPNYAPANEKNGN
Sbjct: 1   MNFILFIFIPGVFSLKSSTLKPTIEALPNVLPLNEDVNKQEEKNEDHTPNYAPANEKNGN 60

Query: 61  YYKDIKQYVFTTQNPNGTESEISVRATTDLNFALKNG----------------------- 97
           YYKDIKQYVFTTQNPNGTESEISVRATTDLNFALKN                        
Sbjct: 61  YYKDIKQYVFTTQNPNGTESEISVRATTDLNFALKNDKTVNATTYEKSTIEEETTTSEPS 120

Query: 98  ------STPNVPAFWTMLAKAINGTAVVMDDKDQLFHPIPESDVNATQGENQPDLEDLKI 151
                 STPNVPAFWTMLAKAINGTAVVMDDKDQLFHPIPESDVNATQGENQPDLEDLKI
Sbjct: 121 HKNIQRSTPNVPAFWTMLAKAINGTAVVMDDKDQLFHPIPESDVNATQGENQPDLEDLKI 180

Query: 152 KIMLGISLMTLLLFVVLLAFCSATLYKLRHLSYKSCESQYSVNPELATMSYFHPSEGVSD 211
           KIMLGISLMTLLLFVVLLAFCSATLYKLRHLSYKSCESQYSVNPELATMSYFHPSEGVSD
Sbjct: 181 KIMLGISLMTLLLFVVLLAFCSATLYKLRHLSYKSCESQYSVNPELATMSYFHPSEGVSD 240

Query: 212 TSFSKSAESSTFLGTTSSDMRRSGTRTSESKIMTDIISIGSDNEMHENDESVTR 265
           TSFSKSAESSTFLGTTSSDMRRSGTRTSESKIMTDIISIGSDNEMHENDESVTR
Sbjct: 241 TSFSKSAESSTFLGTTSSDMRRSGTRTSESKIMTDIISIGSDNEMHENDESVTR 294


>gi|89274169 cytokine induced apoptosis inhibitor 1 [Homo sapiens]
          Length = 312

 Score = 32.3 bits (72), Expect = 0.44
 Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 4/129 (3%)

Query: 5   LFIFIPGVFSLKSSTLKPTIEALPNVLPLNEDVNKQEEKNEDHTPNYAPANEKNGNYYKD 64
           LF+  P   ++ +++   T   L + L L+  V  +E + E  TP    +  ++  +  D
Sbjct: 93  LFLKEPVETAVDNNSKVKTASKLCSALTLSGLVEVKELQREPLTPEEVQSVREHLGHESD 152

Query: 65  IKQYV-FTTQNPN---GTESEISVRATTDLNFALKNGSTPNVPAFWTMLAKAINGTAVVM 120
              +V  T + PN   G+  ++ +  T   + ++K    P     WT+ A  +   ++ +
Sbjct: 153 NLLFVQITGKKPNFEVGSSRQLKLSITKKSSPSVKPAVDPAAAKLWTLSANDMEDDSMDL 212

Query: 121 DDKDQLFHP 129
            D D+L  P
Sbjct: 213 IDSDELLDP 221


>gi|24430146 nucleoporin 153kDa [Homo sapiens]
          Length = 1475

 Score = 31.2 bits (69), Expect = 0.98
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 189  SQYSVNPELATMSYFHPSEGVSDTSFSKSAESSTFLGTTSSDMRRSGTRTSESKIMTDII 248
            S  S NP +AT  +   S  VS ++F  +AESST      S   +  T +S    +T  +
Sbjct: 1215 STSSSNPPVATFVFGQSSNPVSSSAFGNTAESSTSQSLLFSQDSKLATTSSTGTAVTPFV 1274


>gi|13540602 TGF-beta induced apoptosis protein 12 [Homo sapiens]
          Length = 543

 Score = 31.2 bits (69), Expect = 0.98
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 5/34 (14%)

Query: 22  PTIEALPNVLPLNEDVNKQEEKNEDHTPNYAPAN 55
           PT+EAL     L ED N +E +NED  P+++P++
Sbjct: 479 PTLEAL-----LPEDCNPEEPENEDFHPSWSPSS 507


>gi|58530876 melanoma antigen family C, 1 [Homo sapiens]
          Length = 1142

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 170 AFCSATLYKLRHLSYKSCESQYSVNPELATMSYFHPSEGVSDTSFSKSAESSTFLGTTSS 229
           +F S TL  L   S++S +S      +    S        + +S S+S+  S+F  +TSS
Sbjct: 781 SFFSYTLASLLQSSHESPQSPPEGPAQSPLQSPVSSFPSSTSSSLSQSSPVSSFPSSTSS 840

Query: 230 DMRRSGTRTSESKIMTDIISIGSDNEM 256
            + +S   + ES + + +IS  S   +
Sbjct: 841 SLSKS---SPESPLQSPVISFSSSTSL 864


>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
          Length = 2817

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 33  LNEDVNKQEEKNEDHTPNYAPANEK--NGNYYKDIKQYVFTTQNPNGTESE 81
           L ++  K EEK E   PN  P  EK  + N     ++ VFT Q+ N +E E
Sbjct: 589 LEKEREKLEEKIEPREPNLEPMVEKQESENSCNKEEEPVFTRQDSNRSEKE 639


>gi|56605998 EP300 interacting inhibitor of differentiation 3 [Homo
           sapiens]
          Length = 333

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 17/53 (32%), Positives = 25/53 (47%)

Query: 6   FIFIPGVFSLKSSTLKPTIEALPNVLPLNEDVNKQEEKNEDHTPNYAPANEKN 58
           F F+ G F L+ S  KP +E    V  + E+ N   +  +    +Y  A EKN
Sbjct: 168 FHFVFGSFKLERSAPKPRLEHQKKVRKMEENGNMPTKLQKLDLSSYPEATEKN 220


>gi|6005948 WW domain-containing binding protein 4 [Homo sapiens]
          Length = 376

 Score = 28.9 bits (63), Expect = 4.8
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 8/80 (10%)

Query: 15  LKSSTLKPTIEALPNVLPLNEDVNKQEEKNEDHTPNYAPA--------NEKNGNYYKDIK 66
           L+S  L+P+I  + + +P     N+Q+EK E       P+          +  +YY D+ 
Sbjct: 85  LESEILEPSITPVTSTIPPTSTSNQQKEKKEKKKRKKDPSKGRWVEGITSEGYHYYYDLI 144

Query: 67  QYVFTTQNPNGTESEISVRA 86
                 + P G + ++   A
Sbjct: 145 SGASQWEKPEGFQGDLKKTA 164


>gi|126116589 fibrocystin L [Homo sapiens]
          Length = 4243

 Score = 28.9 bits (63), Expect = 4.8
 Identities = 16/42 (38%), Positives = 26/42 (61%)

Query: 208  GVSDTSFSKSAESSTFLGTTSSDMRRSGTRTSESKIMTDIIS 249
            GV   +FS  AES +  G++SS   ++ T  + ++IMT +IS
Sbjct: 4176 GVESRTFSLLAESVSSSGSSSSSNSKASTVGTYAQIMTVVIS 4217


>gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens]
          Length = 170

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 183 SYKSCESQYSVNPELATMSYFHPSEGVSDTSFSKSAESSTFLGTTSSDMRRSGTRTSESK 242
           S  S     S + E +T S    S   SDT  S S+ SS+   TTSS    S + +S S 
Sbjct: 94  SDSSASDSSSESEETSTSS----SSEDSDTDESSSSSSSSASSTTSSSSSDSDSDSSSSS 149

Query: 243 IMTDIISIGSDNE 255
             +      SD+E
Sbjct: 150 SSSTSTDSSSDDE 162


>gi|31377639 sialic acid binding Ig-like lectin 10 [Homo sapiens]
          Length = 697

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 8/84 (9%)

Query: 16  KSSTLKPTIEALPNVLPLNEDVNKQEEKNEDHT--PNYAPANEKNGNYYKDIKQYVF--- 70
           + ST+   I  +P   PL +  N++   N   T  P  AP+ E   N  K  +   F   
Sbjct: 590 RHSTILDYINVVPTAGPLAQKRNQKATPNSPRTPLPPGAPSPESKKNQKKQYQLPSFPEP 649

Query: 71  --TTQNPNGTESEISVRATTDLNF 92
             +TQ P   ES+  +   T LNF
Sbjct: 650 KSSTQAPESQESQEELHYAT-LNF 672


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.128    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,472,258
Number of Sequences: 37866
Number of extensions: 398098
Number of successful extensions: 1005
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 997
Number of HSP's gapped (non-prelim): 15
length of query: 265
length of database: 18,247,518
effective HSP length: 100
effective length of query: 165
effective length of database: 14,460,918
effective search space: 2386051470
effective search space used: 2386051470
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.