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Search of human proteins with 237858664
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|237858664 hypothetical protein LOC123207 isoform b [Homo
sapiens]
(167 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237858664 hypothetical protein LOC123207 isoform b [Homo sapi... 330 3e-91
gi|237858668 hypothetical protein LOC123207 isoform d [Homo sapi... 248 1e-66
gi|237858662 hypothetical protein LOC123207 isoform a [Homo sapi... 243 4e-65
gi|237858670 hypothetical protein LOC123207 isoform e [Homo sapi... 243 7e-65
gi|237858666 hypothetical protein LOC123207 isoform c [Homo sapi... 242 9e-65
gi|148839316 NIMA-related kinase 4 [Homo sapiens] 57 7e-09
gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo ... 55 4e-08
gi|34147403 intraflagellar transport 81-like isoform 2 [Homo sap... 51 4e-07
gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo sapiens] 51 4e-07
gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens] 51 5e-07
gi|66348062 fumarylacetoacetate hydrolase domain containing 1 is... 51 5e-07
gi|94680985 cyclin J-like [Homo sapiens] 50 9e-07
gi|34147532 myosin, light chain 10, regulatory [Homo sapiens] 49 2e-06
gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo ... 46 1e-05
gi|118442834 RPGRIP1-like isoform a [Homo sapiens] 46 2e-05
gi|6005810 mitogen-activated protein kinase kinase kinase kinase... 45 3e-05
gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo s... 45 3e-05
gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens] 45 4e-05
gi|170932471 hypothetical protein LOC79703 [Homo sapiens] 45 4e-05
gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo sapi... 44 5e-05
gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo sapi... 44 5e-05
gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens] 44 5e-05
gi|239755619 PREDICTED: hypothetical protein [Homo sapiens] 44 8e-05
gi|239750132 PREDICTED: hypothetical protein XP_002347267 [Homo ... 44 8e-05
gi|194363758 signal recognition particle 9kDa isoform 1 [Homo sa... 43 1e-04
gi|28372523 intraflagellar transport protein IFT20 [Homo sapiens] 42 3e-04
gi|148236061 hypothetical protein LOC285501 [Homo sapiens] 41 4e-04
gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens] 41 5e-04
gi|122939204 parkin co-regulated gene protein isoform 1 [Homo sa... 41 5e-04
gi|187608508 centromere protein L isoform 1 [Homo sapiens] 40 7e-04
>gi|237858664 hypothetical protein LOC123207 isoform b [Homo
sapiens]
Length = 167
Score = 330 bits (847), Expect = 3e-91
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60
MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK
Sbjct: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60
Query: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120
GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL
Sbjct: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120
Query: 121 DKVGLALFFFFLRQNLALSPKLECSGVVLAHCNLHLLGSSYSPASAS 167
DKVGLALFFFFLRQNLALSPKLECSGVVLAHCNLHLLGSSYSPASAS
Sbjct: 121 DKVGLALFFFFLRQNLALSPKLECSGVVLAHCNLHLLGSSYSPASAS 167
>gi|237858668 hypothetical protein LOC123207 isoform d [Homo
sapiens]
Length = 167
Score = 248 bits (634), Expect = 1e-66
Identities = 134/167 (80%), Positives = 135/167 (80%), Gaps = 21/167 (12%)
Query: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60
MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK
Sbjct: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60
Query: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120
GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL
Sbjct: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120
Query: 121 DKVGLALFFFFLRQNLALSPKLECSGVVLAHCNLHLLGSSYSPASAS 167
DK G +A L LL SS PASAS
Sbjct: 121 DKTG---------------------SCYIAQAGLELLASSDLPASAS 146
>gi|237858662 hypothetical protein LOC123207 isoform a [Homo
sapiens]
Length = 153
Score = 243 bits (621), Expect = 4e-65
Identities = 123/124 (99%), Positives = 123/124 (99%)
Query: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60
MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK
Sbjct: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60
Query: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120
GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL
Sbjct: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120
Query: 121 DKVG 124
DK G
Sbjct: 121 DKGG 124
>gi|237858670 hypothetical protein LOC123207 isoform e [Homo
sapiens]
Length = 149
Score = 243 bits (619), Expect = 7e-65
Identities = 122/123 (99%), Positives = 123/123 (100%)
Query: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60
MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK
Sbjct: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60
Query: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120
GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL
Sbjct: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120
Query: 121 DKV 123
DK+
Sbjct: 121 DKL 123
>gi|237858666 hypothetical protein LOC123207 isoform c [Homo
sapiens]
Length = 153
Score = 242 bits (618), Expect = 9e-65
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60
MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK
Sbjct: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60
Query: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120
GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL
Sbjct: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120
Query: 121 DK 122
DK
Sbjct: 121 DK 122
>gi|148839316 NIMA-related kinase 4 [Homo sapiens]
Length = 841
Score = 57.0 bits (136), Expect = 7e-09
Identities = 28/34 (82%), Positives = 30/34 (88%)
Query: 134 QNLALSPKLECSGVVLAHCNLHLLGSSYSPASAS 167
Q+LALSPKLECSG +LAH NL LLGSS SPASAS
Sbjct: 456 QSLALSPKLECSGTILAHSNLRLLGSSDSPASAS 489
>gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo
sapiens]
Length = 511
Score = 54.7 bits (130), Expect = 4e-08
Identities = 26/35 (74%), Positives = 28/35 (80%)
Query: 133 RQNLALSPKLECSGVVLAHCNLHLLGSSYSPASAS 167
R NLALSP+LECSG + AHCN HL GSS SPA AS
Sbjct: 135 RWNLALSPRLECSGKISAHCNPHLQGSSNSPAQAS 169
>gi|34147403 intraflagellar transport 81-like isoform 2 [Homo
sapiens]
Length = 431
Score = 51.2 bits (121), Expect = 4e-07
Identities = 23/35 (65%), Positives = 29/35 (82%)
Query: 133 RQNLALSPKLECSGVVLAHCNLHLLGSSYSPASAS 167
RQ+L LSP+LEC GV++A+C+L LLGSS P SAS
Sbjct: 397 RQDLTLSPRLECGGVIMAYCSLKLLGSSDPPTSAS 431
>gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo sapiens]
Length = 183
Score = 51.2 bits (121), Expect = 4e-07
Identities = 26/36 (72%), Positives = 29/36 (80%)
Query: 132 LRQNLALSPKLECSGVVLAHCNLHLLGSSYSPASAS 167
LR +L LSP+LE SGV+ AHCNLHLL SS S ASAS
Sbjct: 22 LRWSLVLSPRLEPSGVISAHCNLHLLASSDSSASAS 57
>gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens]
Length = 135
Score = 50.8 bits (120), Expect = 5e-07
Identities = 25/37 (67%), Positives = 31/37 (83%)
Query: 131 FLRQNLALSPKLECSGVVLAHCNLHLLGSSYSPASAS 167
+ +++LAL P+LECSGV+LAHCNL LLGSS S A AS
Sbjct: 99 YRQRSLALLPRLECSGVILAHCNLCLLGSSDSLALAS 135
>gi|66348062 fumarylacetoacetate hydrolase domain containing 1
isoform 1 [Homo sapiens]
Length = 248
Score = 50.8 bits (120), Expect = 5e-07
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 15/74 (20%)
Query: 106 YLSKVLELRKSDVVL-------------DKVGLALFFFFLRQNLALSPKLECSGVVLAHC 152
Y+SK++ L + D++L D++ + LRQ L LSPKLECS + AHC
Sbjct: 175 YVSKIITLEEGDIILTGTPKGVGPVKENDEIEAGIHG--LRQGLTLSPKLECSSAITAHC 232
Query: 153 NLHLLGSSYSPASA 166
+L L GSS P+++
Sbjct: 233 SLELPGSSNPPSAS 246
>gi|94680985 cyclin J-like [Homo sapiens]
Length = 435
Score = 50.1 bits (118), Expect = 9e-07
Identities = 22/29 (75%), Positives = 26/29 (89%)
Query: 138 LSPKLECSGVVLAHCNLHLLGSSYSPASA 166
LSP+L+CSG++ AHCNLHL GSS SPASA
Sbjct: 99 LSPRLKCSGMISAHCNLHLPGSSNSPASA 127
>gi|34147532 myosin, light chain 10, regulatory [Homo sapiens]
Length = 226
Score = 48.9 bits (115), Expect = 2e-06
Identities = 23/35 (65%), Positives = 30/35 (85%)
Query: 133 RQNLALSPKLECSGVVLAHCNLHLLGSSYSPASAS 167
+++LALSP+LE +G++ AHCNL L GSS SPASAS
Sbjct: 56 KESLALSPRLERNGMISAHCNLCLTGSSNSPASAS 90
>gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo
sapiens]
Length = 261
Score = 46.2 bits (108), Expect = 1e-05
Identities = 23/34 (67%), Positives = 26/34 (76%)
Query: 134 QNLALSPKLECSGVVLAHCNLHLLGSSYSPASAS 167
+ LAL P+LE SG + A CNL LLGSS SPASAS
Sbjct: 6 EGLALYPRLEFSGTISARCNLRLLGSSDSPASAS 39
>gi|118442834 RPGRIP1-like isoform a [Homo sapiens]
Length = 1315
Score = 45.8 bits (107), Expect = 2e-05
Identities = 22/36 (61%), Positives = 26/36 (72%)
Query: 132 LRQNLALSPKLECSGVVLAHCNLHLLGSSYSPASAS 167
++Q+LALSP L CS + AHCN L GSS PASAS
Sbjct: 1096 IKQSLALSPGLGCSSAISAHCNFRLPGSSDFPASAS 1131
>gi|6005810 mitogen-activated protein kinase kinase kinase kinase 1
isoform 2 [Homo sapiens]
Length = 833
Score = 45.1 bits (105), Expect = 3e-05
Identities = 21/29 (72%), Positives = 23/29 (79%)
Query: 139 SPKLECSGVVLAHCNLHLLGSSYSPASAS 167
SP+LECSG + HCNL L GSS SPASAS
Sbjct: 797 SPRLECSGTISPHCNLLLPGSSNSPASAS 825
>gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo
sapiens]
Length = 1151
Score = 45.1 bits (105), Expect = 3e-05
Identities = 20/30 (66%), Positives = 24/30 (80%)
Query: 138 LSPKLECSGVVLAHCNLHLLGSSYSPASAS 167
+SP+LECSG V+AHC+L LL SS P SAS
Sbjct: 440 MSPRLECSGTVIAHCSLKLLDSSNPPTSAS 469
>gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens]
Length = 638
Score = 44.7 bits (104), Expect = 4e-05
Identities = 20/27 (74%), Positives = 23/27 (85%)
Query: 141 KLECSGVVLAHCNLHLLGSSYSPASAS 167
+LECSG + AHC+LHL GSS SPASAS
Sbjct: 8 RLECSGAISAHCSLHLPGSSDSPASAS 34
>gi|170932471 hypothetical protein LOC79703 [Homo sapiens]
Length = 677
Score = 44.7 bits (104), Expect = 4e-05
Identities = 24/40 (60%), Positives = 26/40 (65%)
Query: 126 ALFFFFLRQNLALSPKLECSGVVLAHCNLHLLGSSYSPAS 165
AL R +L L P+ ECSG V AHCNLHL GSS S AS
Sbjct: 99 ALHCVTTRWSLTLLPRPECSGAVSAHCNLHLPGSSDSHAS 138
>gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo
sapiens]
Length = 312
Score = 44.3 bits (103), Expect = 5e-05
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 141 KLECSGVVLAHCNLHLLGSSYSPASAS 167
+LEC+G + AHCNLHL GSS SPAS+S
Sbjct: 49 RLECNGTISAHCNLHLPGSSDSPASSS 75
>gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo
sapiens]
Length = 341
Score = 44.3 bits (103), Expect = 5e-05
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 141 KLECSGVVLAHCNLHLLGSSYSPASAS 167
+LEC+G + AHCNLHL GSS SPAS+S
Sbjct: 49 RLECNGTISAHCNLHLPGSSDSPASSS 75
>gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens]
Length = 475
Score = 44.3 bits (103), Expect = 5e-05
Identities = 20/27 (74%), Positives = 23/27 (85%)
Query: 141 KLECSGVVLAHCNLHLLGSSYSPASAS 167
+LECSG++LAHCNL L GS SPASAS
Sbjct: 431 RLECSGMILAHCNLRLPGSRDSPASAS 457
>gi|239755619 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 43.5 bits (101), Expect = 8e-05
Identities = 22/34 (64%), Positives = 25/34 (73%)
Query: 134 QNLALSPKLECSGVVLAHCNLHLLGSSYSPASAS 167
+ LA P+LE SG + A CNL LLGSS SPASAS
Sbjct: 6 EGLAPYPRLEFSGTISARCNLRLLGSSDSPASAS 39
>gi|239750132 PREDICTED: hypothetical protein XP_002347267 [Homo
sapiens]
Length = 261
Score = 43.5 bits (101), Expect = 8e-05
Identities = 22/34 (64%), Positives = 25/34 (73%)
Query: 134 QNLALSPKLECSGVVLAHCNLHLLGSSYSPASAS 167
+ LA P+LE SG + A CNL LLGSS SPASAS
Sbjct: 6 EGLAPYPRLEFSGTISARCNLRLLGSSDSPASAS 39
>gi|194363758 signal recognition particle 9kDa isoform 1 [Homo
sapiens]
Length = 82
Score = 43.1 bits (100), Expect = 1e-04
Identities = 22/36 (61%), Positives = 28/36 (77%)
Query: 132 LRQNLALSPKLECSGVVLAHCNLHLLGSSYSPASAS 167
+RQ LAL +L+CSG+++AHC L LLGSS ASAS
Sbjct: 47 VRQCLALLLRLQCSGMIIAHCILDLLGSSGPLASAS 82
>gi|28372523 intraflagellar transport protein IFT20 [Homo sapiens]
Length = 148
Score = 41.6 bits (96), Expect = 3e-04
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 134 QNLALSPKLECSGVVLAHCNLHLLGSSYSPASAS 167
++LA+SP+LEC+G + AHC L L SS SP S S
Sbjct: 71 KSLAVSPRLECTGAISAHCKLCLSDSSDSPTSPS 104
>gi|148236061 hypothetical protein LOC285501 [Homo sapiens]
Length = 109
Score = 41.2 bits (95), Expect = 4e-04
Identities = 19/27 (70%), Positives = 21/27 (77%)
Query: 141 KLECSGVVLAHCNLHLLGSSYSPASAS 167
KLECSG +LAHCNL LLGS + SAS
Sbjct: 21 KLECSGPILAHCNLCLLGSRHPSTSAS 47
>gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens]
Length = 629
Score = 40.8 bits (94), Expect = 5e-04
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 134 QNLALSPKLECSGVVLAHCNLHLLGSSYSPASAS 167
+ L L P+LECS + AHC+L+LL SS P S S
Sbjct: 584 EGLTLWPRLECSSTITAHCSLNLLDSSNPPTSTS 617
>gi|122939204 parkin co-regulated gene protein isoform 1 [Homo
sapiens]
Length = 296
Score = 40.8 bits (94), Expect = 5e-04
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 140 PKLECSGVVLAHCNLHLLGSSYSPASAS 167
P+LECSG ++A CNL LGSS P SAS
Sbjct: 210 PRLECSGAIMARCNLDHLGSSDPPTSAS 237
>gi|187608508 centromere protein L isoform 1 [Homo sapiens]
Length = 390
Score = 40.4 bits (93), Expect = 7e-04
Identities = 20/30 (66%), Positives = 22/30 (73%)
Query: 131 FLRQNLALSPKLECSGVVLAHCNLHLLGSS 160
FL Q L LSP+LE SG +L CNL LLGSS
Sbjct: 137 FLVQGLILSPRLEYSGTILVDCNLCLLGSS 166
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,684,953
Number of Sequences: 37866
Number of extensions: 278351
Number of successful extensions: 1416
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1254
Number of HSP's gapped (non-prelim): 185
length of query: 167
length of database: 18,247,518
effective HSP length: 95
effective length of query: 72
effective length of database: 14,650,248
effective search space: 1054817856
effective search space used: 1054817856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.