BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|23510352 MIF4G domain containing [Homo sapiens] (256 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|23510352 MIF4G domain containing [Homo sapiens] 517 e-147 gi|215422401 hypothetical protein LOC9811 isoform 2 [Homo sapiens] 97 2e-20 gi|7662112 hypothetical protein LOC9811 isoform 1 [Homo sapiens] 97 2e-20 gi|10092601 eukaryotic translation initiation factor 4 gamma, 3 ... 37 0.022 gi|169212085 PREDICTED: similar to poly(A) binding protein inter... 33 0.24 gi|239752553 PREDICTED: similar to poly(A) binding protein inter... 33 0.24 gi|89041275 PREDICTED: similar to poly(A) binding protein intera... 33 0.24 gi|110630018 eukaryotic translation initiation factor 4 gamma, 2... 33 0.32 gi|4503539 eukaryotic translation initiation factor 4 gamma, 2 i... 33 0.32 gi|34452730 poly(A) binding protein interacting protein 1 isofor... 32 0.54 gi|33386693 poly(A) binding protein interacting protein 1 isofor... 32 0.54 gi|17511255 poly(A) binding protein interacting protein 1 isofor... 32 0.54 gi|82697315 RUN and FYVE domain containing 3 isoform 1 [Homo sap... 28 6.0 gi|7706635 cornulin [Homo sapiens] 28 7.8 >gi|23510352 MIF4G domain containing [Homo sapiens] Length = 256 Score = 517 bits (1332), Expect = e-147 Identities = 256/256 (100%), Positives = 256/256 (100%) Query: 1 MGEPSREEYKIQSFDAETQQLLKTALKVACFETEDGEYSVCQRSYSNCSRLMPSRCNTQY 60 MGEPSREEYKIQSFDAETQQLLKTALKVACFETEDGEYSVCQRSYSNCSRLMPSRCNTQY Sbjct: 1 MGEPSREEYKIQSFDAETQQLLKTALKVACFETEDGEYSVCQRSYSNCSRLMPSRCNTQY 60 Query: 61 RDPGAVDLEKVANVIVDHSLQDCVFSKEAGRMCYAIIQAESKQAGQSVFRRGLLNRLQQE 120 RDPGAVDLEKVANVIVDHSLQDCVFSKEAGRMCYAIIQAESKQAGQSVFRRGLLNRLQQE Sbjct: 61 RDPGAVDLEKVANVIVDHSLQDCVFSKEAGRMCYAIIQAESKQAGQSVFRRGLLNRLQQE 120 Query: 121 YQAREQLRARSLQGWVCYVTFICNIFDYLRVNNMPMMALVNPVYDCLFRLAQPDSLSKEE 180 YQAREQLRARSLQGWVCYVTFICNIFDYLRVNNMPMMALVNPVYDCLFRLAQPDSLSKEE Sbjct: 121 YQAREQLRARSLQGWVCYVTFICNIFDYLRVNNMPMMALVNPVYDCLFRLAQPDSLSKEE 180 Query: 181 EVDCLVLQLHRVGEQLEKMNGQRMDELFVLIRDGFLLPTGLSSLAQLLLLEIIEFRAAGW 240 EVDCLVLQLHRVGEQLEKMNGQRMDELFVLIRDGFLLPTGLSSLAQLLLLEIIEFRAAGW Sbjct: 181 EVDCLVLQLHRVGEQLEKMNGQRMDELFVLIRDGFLLPTGLSSLAQLLLLEIIEFRAAGW 240 Query: 241 KTTPAAHKYYYSEVSD 256 KTTPAAHKYYYSEVSD Sbjct: 241 KTTPAAHKYYYSEVSD 256 >gi|215422401 hypothetical protein LOC9811 isoform 2 [Homo sapiens] Length = 600 Score = 96.7 bits (239), Expect = 2e-20 Identities = 62/187 (33%), Positives = 97/187 (51%), Gaps = 11/187 (5%) Query: 68 LEKVANVIVDHSLQDCVFSKEAGRMC--YAIIQAESKQAGQSVFRRGLLNRLQQEYQARE 125 L ++ I ++ D F+ A ++C A+ E + FR LLN LQ+++ RE Sbjct: 412 LGEIVRTIYQKAVSDRSFAFTAAKLCDKMALFMVEGTK-----FRSLLLNMLQKDFTVRE 466 Query: 126 QLRARSLQGWVCYVTFICNIFDYLRVN-NMPMMALVNPVYDCLFRLAQPDSLSKEEEVDC 184 +L+ + ++ W+ ++TF+C +F +R + P LV P+Y CL L Q + KE+ V C Sbjct: 467 ELQQQDVERWLGFITFLCEVFGTMRSSTGEPFRVLVCPIYTCLRELLQSQDV-KEDAVLC 525 Query: 185 LVLQLHRVGEQLEKMNGQRMDELFVLIRDGFLLPTGLSSLAQLLLLEIIEFRAAGWK-TT 243 ++L G LE+ + M EL RD L P+ S L + LLLE+IE A W T Sbjct: 526 CSMELQSTGRLLEEQLPEMMTELLASARDKMLCPSE-SMLTRSLLLEVIELHANSWNPLT 584 Query: 244 PAAHKYY 250 P +YY Sbjct: 585 PPITQYY 591 >gi|7662112 hypothetical protein LOC9811 isoform 1 [Homo sapiens] Length = 598 Score = 96.7 bits (239), Expect = 2e-20 Identities = 62/187 (33%), Positives = 97/187 (51%), Gaps = 11/187 (5%) Query: 68 LEKVANVIVDHSLQDCVFSKEAGRMC--YAIIQAESKQAGQSVFRRGLLNRLQQEYQARE 125 L ++ I ++ D F+ A ++C A+ E + FR LLN LQ+++ RE Sbjct: 410 LGEIVRTIYQKAVSDRSFAFTAAKLCDKMALFMVEGTK-----FRSLLLNMLQKDFTVRE 464 Query: 126 QLRARSLQGWVCYVTFICNIFDYLRVN-NMPMMALVNPVYDCLFRLAQPDSLSKEEEVDC 184 +L+ + ++ W+ ++TF+C +F +R + P LV P+Y CL L Q + KE+ V C Sbjct: 465 ELQQQDVERWLGFITFLCEVFGTMRSSTGEPFRVLVCPIYTCLRELLQSQDV-KEDAVLC 523 Query: 185 LVLQLHRVGEQLEKMNGQRMDELFVLIRDGFLLPTGLSSLAQLLLLEIIEFRAAGWK-TT 243 ++L G LE+ + M EL RD L P+ S L + LLLE+IE A W T Sbjct: 524 CSMELQSTGRLLEEQLPEMMTELLASARDKMLCPSE-SMLTRSLLLEVIELHANSWNPLT 582 Query: 244 PAAHKYY 250 P +YY Sbjct: 583 PPITQYY 589 >gi|10092601 eukaryotic translation initiation factor 4 gamma, 3 [Homo sapiens] Length = 1585 Score = 36.6 bits (83), Expect = 0.022 Identities = 45/212 (21%), Positives = 87/212 (41%), Gaps = 54/212 (25%) Query: 68 LEKVANVIVDHSLQDCVFSKEAGRMCYAIIQAESKQA---GQSV-FRRGLLNRLQQEY-- 121 L+ V +++ + ++ + FS MC ++ + A G +V FR+ LLNR Q+E+ Sbjct: 788 LKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNTVNFRKLLLNRCQKEFEK 847 Query: 122 --------------------------------QAREQLRARSLQGWVCYVTFICNIFDYL 149 +A+++ R RS+ + FI +F Sbjct: 848 DKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGN----IKFIGELFKLK 903 Query: 150 RVNNMPMMALVNPVYDCLFRLAQPDSLSKEEEVDCLVLQLHRVGEQLEKMNGQ-RMDELF 208 + M +DC+ +L + EE ++CL L +G+ L+ + RMD+ F Sbjct: 904 MLTEAIM-------HDCVVKLLKNHD---EESLECLCRLLTTIGKDLDFEKAKPRMDQYF 953 Query: 209 VLIRDGFLLPTGLSSLAQLLLLEIIEFRAAGW 240 + + + SS + +L ++I+ R W Sbjct: 954 NQM-EKIVKERKTSSRIRFMLQDVIDLRLCNW 984 >gi|169212085 PREDICTED: similar to poly(A) binding protein interacting protein 1 [Homo sapiens] Length = 516 Score = 33.1 bits (74), Expect = 0.24 Identities = 40/196 (20%), Positives = 77/196 (39%), Gaps = 20/196 (10%) Query: 68 LEKVANVIVDHSLQDCVFSKEAGRMCYAIIQAESKQAGQSVFRRGLLNRLQQEYQAREQL 127 L+++A +I + FS R+C + + FR+ LL R + EY+ ++Q Sbjct: 234 LQELAELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQA 293 Query: 128 RAR---SLQGWVCYVTFICNIFDYLRVNNMP--------MMALVNPVYDCLFRLAQPDSL 176 + + + +V F+ ++ L + + + + + LF D+L Sbjct: 294 AKGDEVTRKRFHAFVFFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNL 353 Query: 177 SKEEEVDCLVLQLHRVGEQLE---KMNGQRMDELFVLIRDGFLLPTGLSSLAQLLLLEII 233 C V L G LE K G+ E + + +L S + +LL+++ Sbjct: 354 I------CAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLV 407 Query: 234 EFRAAGWKTTPAAHKY 249 E R++ W A Y Sbjct: 408 ELRSSNWGRVHATSTY 423 >gi|239752553 PREDICTED: similar to poly(A) binding protein interacting protein 1 [Homo sapiens] Length = 457 Score = 33.1 bits (74), Expect = 0.24 Identities = 40/196 (20%), Positives = 77/196 (39%), Gaps = 20/196 (10%) Query: 68 LEKVANVIVDHSLQDCVFSKEAGRMCYAIIQAESKQAGQSVFRRGLLNRLQQEYQAREQL 127 L+++A +I + FS R+C + + FR+ LL R + EY+ ++Q Sbjct: 175 LQELAELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQA 234 Query: 128 RAR---SLQGWVCYVTFICNIFDYLRVNNMP--------MMALVNPVYDCLFRLAQPDSL 176 + + + +V F+ ++ L + + + + + LF D+L Sbjct: 235 AKGDEVTRKRFHAFVFFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNL 294 Query: 177 SKEEEVDCLVLQLHRVGEQLE---KMNGQRMDELFVLIRDGFLLPTGLSSLAQLLLLEII 233 C V L G LE K G+ E + + +L S + +LL+++ Sbjct: 295 I------CAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLV 348 Query: 234 EFRAAGWKTTPAAHKY 249 E R++ W A Y Sbjct: 349 ELRSSNWGRVHATSTY 364 >gi|89041275 PREDICTED: similar to poly(A) binding protein interacting protein 1 [Homo sapiens] Length = 488 Score = 33.1 bits (74), Expect = 0.24 Identities = 40/196 (20%), Positives = 77/196 (39%), Gaps = 20/196 (10%) Query: 68 LEKVANVIVDHSLQDCVFSKEAGRMCYAIIQAESKQAGQSVFRRGLLNRLQQEYQAREQL 127 L+++A +I + FS R+C + + FR+ LL R + EY+ ++Q Sbjct: 206 LQELAELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQA 265 Query: 128 RAR---SLQGWVCYVTFICNIFDYLRVNNMP--------MMALVNPVYDCLFRLAQPDSL 176 + + + +V F+ ++ L + + + + + LF D+L Sbjct: 266 AKGDEVTRKRFHAFVFFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNL 325 Query: 177 SKEEEVDCLVLQLHRVGEQLE---KMNGQRMDELFVLIRDGFLLPTGLSSLAQLLLLEII 233 C V L G LE K G+ E + + +L S + +LL+++ Sbjct: 326 I------CAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLV 379 Query: 234 EFRAAGWKTTPAAHKY 249 E R++ W A Y Sbjct: 380 ELRSSNWGRVHATSTY 395 >gi|110630018 eukaryotic translation initiation factor 4 gamma, 2 isoform 2 [Homo sapiens] Length = 869 Score = 32.7 bits (73), Expect = 0.32 Identities = 40/202 (19%), Positives = 84/202 (41%), Gaps = 32/202 (15%) Query: 68 LEKVANVIVDHSLQDCVFSKEAGRMCYAIIQ--------AESKQAGQ---SVFRRGLLNR 116 L+ V +IVD +L++ +S ++C + + A Q GQ + FRR L+++ Sbjct: 111 LKGVILLIVDKALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISK 170 Query: 117 LQQEYQAREQ------------LRARSLQGWVCYVTFICNIFDYLRVNNMPMMALVNP-- 162 LQ E++ R + L Q + + + NI + + + L++ Sbjct: 171 LQDEFENRTRNVDVYDKRENPLLPEEEEQRAIAKIKMLGNI---KFIGELGKLDLIHESI 227 Query: 163 VYDCLFRLAQPDS----LSKEEEVDCLVLQLHRVGEQLEKMNGQRMDELFVLIRDGFLLP 218 ++ C+ L + E+++CL + VG +L+ + + + + +L Sbjct: 228 LHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLS 287 Query: 219 TGLSSLAQLLLLEIIEFRAAGW 240 L + + LL + +E R W Sbjct: 288 KELPARIRFLLQDTVELREHHW 309 >gi|4503539 eukaryotic translation initiation factor 4 gamma, 2 isoform 1 [Homo sapiens] Length = 907 Score = 32.7 bits (73), Expect = 0.32 Identities = 40/202 (19%), Positives = 84/202 (41%), Gaps = 32/202 (15%) Query: 68 LEKVANVIVDHSLQDCVFSKEAGRMCYAIIQ--------AESKQAGQ---SVFRRGLLNR 116 L+ V +IVD +L++ +S ++C + + A Q GQ + FRR L+++ Sbjct: 111 LKGVILLIVDKALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISK 170 Query: 117 LQQEYQAREQ------------LRARSLQGWVCYVTFICNIFDYLRVNNMPMMALVNP-- 162 LQ E++ R + L Q + + + NI + + + L++ Sbjct: 171 LQDEFENRTRNVDVYDKRENPLLPEEEEQRAIAKIKMLGNI---KFIGELGKLDLIHESI 227 Query: 163 VYDCLFRLAQPDS----LSKEEEVDCLVLQLHRVGEQLEKMNGQRMDELFVLIRDGFLLP 218 ++ C+ L + E+++CL + VG +L+ + + + + +L Sbjct: 228 LHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLS 287 Query: 219 TGLSSLAQLLLLEIIEFRAAGW 240 L + + LL + +E R W Sbjct: 288 KELPARIRFLLQDTVELREHHW 309 >gi|34452730 poly(A) binding protein interacting protein 1 isoform 3 [Homo sapiens] Length = 367 Score = 32.0 bits (71), Expect = 0.54 Identities = 39/196 (19%), Positives = 76/196 (38%), Gaps = 20/196 (10%) Query: 68 LEKVANVIVDHSLQDCVFSKEAGRMCYAIIQAESKQAGQSVFRRGLLNRLQQEYQAREQL 127 L+++ +I + FS R+C + + FR+ LL R + EY+ ++Q Sbjct: 85 LQELVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQA 144 Query: 128 RAR---SLQGWVCYVTFICNIFDYLRVNNMP--------MMALVNPVYDCLFRLAQPDSL 176 + + + +V F+ ++ L + + + + + LF D+L Sbjct: 145 AKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNL 204 Query: 177 SKEEEVDCLVLQLHRVGEQLE---KMNGQRMDELFVLIRDGFLLPTGLSSLAQLLLLEII 233 C V L G LE K G+ E + + +L S + +LL+++ Sbjct: 205 I------CAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLV 258 Query: 234 EFRAAGWKTTPAAHKY 249 E R++ W A Y Sbjct: 259 ELRSSNWGRVHATSTY 274 >gi|33386693 poly(A) binding protein interacting protein 1 isoform 2 [Homo sapiens] Length = 400 Score = 32.0 bits (71), Expect = 0.54 Identities = 39/196 (19%), Positives = 76/196 (38%), Gaps = 20/196 (10%) Query: 68 LEKVANVIVDHSLQDCVFSKEAGRMCYAIIQAESKQAGQSVFRRGLLNRLQQEYQAREQL 127 L+++ +I + FS R+C + + FR+ LL R + EY+ ++Q Sbjct: 118 LQELVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQA 177 Query: 128 RAR---SLQGWVCYVTFICNIFDYLRVNNMP--------MMALVNPVYDCLFRLAQPDSL 176 + + + +V F+ ++ L + + + + + LF D+L Sbjct: 178 AKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNL 237 Query: 177 SKEEEVDCLVLQLHRVGEQLE---KMNGQRMDELFVLIRDGFLLPTGLSSLAQLLLLEII 233 C V L G LE K G+ E + + +L S + +LL+++ Sbjct: 238 I------CAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLV 291 Query: 234 EFRAAGWKTTPAAHKY 249 E R++ W A Y Sbjct: 292 ELRSSNWGRVHATSTY 307 >gi|17511255 poly(A) binding protein interacting protein 1 isoform 1 [Homo sapiens] Length = 479 Score = 32.0 bits (71), Expect = 0.54 Identities = 39/196 (19%), Positives = 76/196 (38%), Gaps = 20/196 (10%) Query: 68 LEKVANVIVDHSLQDCVFSKEAGRMCYAIIQAESKQAGQSVFRRGLLNRLQQEYQAREQL 127 L+++ +I + FS R+C + + FR+ LL R + EY+ ++Q Sbjct: 197 LQELVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQA 256 Query: 128 RAR---SLQGWVCYVTFICNIFDYLRVNNMP--------MMALVNPVYDCLFRLAQPDSL 176 + + + +V F+ ++ L + + + + + LF D+L Sbjct: 257 AKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNL 316 Query: 177 SKEEEVDCLVLQLHRVGEQLE---KMNGQRMDELFVLIRDGFLLPTGLSSLAQLLLLEII 233 C V L G LE K G+ E + + +L S + +LL+++ Sbjct: 317 I------CAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLV 370 Query: 234 EFRAAGWKTTPAAHKY 249 E R++ W A Y Sbjct: 371 ELRSSNWGRVHATSTY 386 >gi|82697315 RUN and FYVE domain containing 3 isoform 1 [Homo sapiens] Length = 620 Score = 28.5 bits (62), Expect = 6.0 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%) Query: 3 EPSREEYKIQS--FDAETQQLLKTALKVACFETEDGEYSVCQRSYSNCSRLMPSRCNT-Q 59 +P E +++Q D + Q LL ++ EDG S+ + NCS C+T + Sbjct: 534 KPLEESHRLQPHPMDEQDQLLLSEKPQLCQLCQEDG--SLTKNVCKNCSGTFCDACSTNE 591 Query: 60 YRDPGAVDLEKVANVIVDHSLQ 81 P ++ LE+V N H ++ Sbjct: 592 LPLPSSIKLERVCNPCHKHLMK 613 >gi|7706635 cornulin [Homo sapiens] Length = 495 Score = 28.1 bits (61), Expect = 7.8 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 7/72 (9%) Query: 53 PSRCNTQY---RDPGAVDLEKVANVIVDHSLQDCVFSKEAGRMCYAIIQAESKQAGQSVF 109 P RC T+ R P V E V DHS + + + G + ++ A+ + A QS Sbjct: 422 PRRCVTEGQGDRQPTVVGEEWVD----DHSRETVILRLDQGNLHTSVSSAQGQDAAQSEE 477 Query: 110 RRGLLNRLQQEY 121 +RG+ R Y Sbjct: 478 KRGITARELYSY 489 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.322 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,114,163 Number of Sequences: 37866 Number of extensions: 356131 Number of successful extensions: 843 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 836 Number of HSP's gapped (non-prelim): 16 length of query: 256 length of database: 18,247,518 effective HSP length: 100 effective length of query: 156 effective length of database: 14,460,918 effective search space: 2255903208 effective search space used: 2255903208 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.