Search of human proteins with 23503301

Search of human proteins with 23503301

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|23503301 hypothetical protein LOC196472 [Homo sapiens]
         (241 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|23503301 hypothetical protein LOC196472 [Homo sapiens]             490   e-139
gi|23957696 hypothetical protein LOC149647 [Homo sapiens]             261   3e-70
gi|222418633 family with sequence similarity 71, member B [Homo ...   241   3e-64
gi|89363024 hypothetical protein LOC161142 [Homo sapiens]             113   1e-25
gi|76253859 hypothetical protein LOC112703 [Homo sapiens]              98   7e-21
gi|223972704 hypothetical protein LOC284418 [Homo sapiens]             97   1e-20
gi|193083150 hypothetical protein LOC346653 isoform b [Homo sapi...    74   9e-14
gi|14211935 testes development-related NYD-SP18 [Homo sapiens]         72   4e-13
gi|149192824 hypothetical protein LOC346653 isoform a [Homo sapi...    67   2e-11
gi|194394141 nucleolar preribosomal-associated protein 1 [Homo s...    30   2.5  
gi|59891448 rapamycin-insensitive companion of mTOR [Homo sapiens]     29   3.2  
gi|22027541 programmed cell death 7 [Homo sapiens]                     28   5.5  
gi|100913206 DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Homo sapi...    28   9.3  
gi|19115954 dynein, axonemal, heavy chain 5 [Homo sapiens]             28   9.3  
gi|161484640 neuromedin B receptor [Homo sapiens]                      28   9.3  

>gi|23503301 hypothetical protein LOC196472 [Homo sapiens]
          Length = 241

 Score =  490 bits (1262), Expect = e-139
 Identities = 241/241 (100%), Positives = 241/241 (100%)

Query: 1   MEDCCMLPYYTAQSSPAMGMFNTSMGKLQRQLYKGEYTIFRYAPMFESDFIQISKRGEVI 60
           MEDCCMLPYYTAQSSPAMGMFNTSMGKLQRQLYKGEYTIFRYAPMFESDFIQISKRGEVI
Sbjct: 1   MEDCCMLPYYTAQSSPAMGMFNTSMGKLQRQLYKGEYTIFRYAPMFESDFIQISKRGEVI 60

Query: 61  DVHNRARMVTMGIVRTSPCLTLPDVMLLARPAAVCDNARCGPATQKRESPPAEILELTRL 120
           DVHNRARMVTMGIVRTSPCLTLPDVMLLARPAAVCDNARCGPATQKRESPPAEILELTRL
Sbjct: 61  DVHNRARMVTMGIVRTSPCLTLPDVMLLARPAAVCDNARCGPATQKRESPPAEILELTRL 120

Query: 121 LPLMFVKITIHNSVKKQLHLKLATGRSFYLQLCPPSDASEDLFVHWENLVYILRPPVEAY 180
           LPLMFVKITIHNSVKKQLHLKLATGRSFYLQLCPPSDASEDLFVHWENLVYILRPPVEAY
Sbjct: 121 LPLMFVKITIHNSVKKQLHLKLATGRSFYLQLCPPSDASEDLFVHWENLVYILRPPVEAY 180

Query: 181 SDTRAILAGNTLDSSVLEEVQRSPVGYAMKFCEEKEQFRISRLHMNAEMFGSTYCDYTIE 240
           SDTRAILAGNTLDSSVLEEVQRSPVGYAMKFCEEKEQFRISRLHMNAEMFGSTYCDYTIE
Sbjct: 181 SDTRAILAGNTLDSSVLEEVQRSPVGYAMKFCEEKEQFRISRLHMNAEMFGSTYCDYTIE 240

Query: 241 I 241
           I
Sbjct: 241 I 241


>gi|23957696 hypothetical protein LOC149647 [Homo sapiens]
          Length = 594

 Score =  261 bits (668), Expect = 3e-70
 Identities = 136/233 (58%), Positives = 172/233 (73%), Gaps = 1/233 (0%)

Query: 6   MLPYYTAQSSPAMGMFNTSMGKLQRQLYKGEYTIFRYAPMFESDFIQISKRGEVIDVHNR 65
           +LPYYTAQS  +M MF+T+MGKLQRQLYKGEY IF+YAP+FESDFIQI+KRGEVIDVHNR
Sbjct: 6   LLPYYTAQSGSSMSMFDTTMGKLQRQLYKGEYDIFKYAPIFESDFIQITKRGEVIDVHNR 65

Query: 66  ARMVTMGIVRTSPCLTLPDVMLLARPAAVCDN-ARCGPATQKRESPPAEILELTRLLPLM 124
            RMVTMGI RTSP L LPDVMLLARPA  C+  A  G AT++++   A+ LELTRLLPL 
Sbjct: 66  VRMVTMGIARTSPILPLPDVMLLARPATGCEEYAGHGQATKRKKRKAAKNLELTRLLPLR 125

Query: 125 FVKITIHNSVKKQLHLKLATGRSFYLQLCPPSDASEDLFVHWENLVYILRPPVEAYSDTR 184
           FV+I++ +  K+QL LK ATGRS YLQLCP  D  +DLF +WE L+Y+LRPP+E+ S T 
Sbjct: 126 FVRISVQDHEKQQLRLKFATGRSCYLQLCPALDTRDDLFAYWEKLIYLLRPPMESNSSTC 185

Query: 185 AILAGNTLDSSVLEEVQRSPVGYAMKFCEEKEQFRISRLHMNAEMFGSTYCDY 237
            I A + +   V +E +RS     ++   +++Q  I  LHM +E+ G+T   Y
Sbjct: 186 GIPAEDMMWMPVFQEDRRSLGAVNLQGKGDQDQVSIQSLHMVSEVCGATSAAY 238


>gi|222418633 family with sequence similarity 71, member B [Homo
           sapiens]
          Length = 605

 Score =  241 bits (616), Expect = 3e-64
 Identities = 124/191 (64%), Positives = 148/191 (77%), Gaps = 4/191 (2%)

Query: 2   EDCCMLPYYTAQSSPAMGMFNTSMGKLQRQLY-KGEYTIFRYAPMFESDFIQISKRGEVI 60
           E C  LPYYTA S  +M  F TSMG LQRQLY +GEY IF+YAPMFES+FIQI+K+GEVI
Sbjct: 4   ESC--LPYYTAHSYSSMSAFKTSMGDLQRQLYNRGEYNIFKYAPMFESNFIQINKKGEVI 61

Query: 61  DVHNRARMVTMGIVRTSPCLTLPDVMLLARPAAVCD-NARCGPATQKRESPPAEILELTR 119
           DVHNR RMVT+GIV TSP L LPDVM+LA+P  +C+ + R G   + R   P + LELTR
Sbjct: 62  DVHNRVRMVTVGIVCTSPILPLPDVMVLAQPTKICEQHVRWGRFAKGRGRRPVKTLELTR 121

Query: 120 LLPLMFVKITIHNSVKKQLHLKLATGRSFYLQLCPPSDASEDLFVHWENLVYILRPPVEA 179
           LLPL FVKI+IH+  K+QL LKLATGR+FYLQLCP SD  EDLF +WE LVY+LRPPVE+
Sbjct: 122 LLPLKFVKISIHDHEKQQLRLKLATGRTFYLQLCPSSDTREDLFCYWEKLVYLLRPPVES 181

Query: 180 YSDTRAILAGN 190
           Y  T  +L+G+
Sbjct: 182 YCSTPTLLSGD 192


>gi|89363024 hypothetical protein LOC161142 [Homo sapiens]
          Length = 422

 Score =  113 bits (283), Expect = 1e-25
 Identities = 66/148 (44%), Positives = 89/148 (60%), Gaps = 4/148 (2%)

Query: 28  LQRQLYKGEYTIFRYAPMFESDFIQISKRGEVIDVHNRARMVTMGIVRTSPCLTLPDVML 87
           LQ  L  GEY  F   PM ES+FIQ+++RGE I +HNRA  VT+GI  +S    +P+VML
Sbjct: 29  LQNMLDGGEYAPFVSPPMLESNFIQVNRRGESIYLHNRANWVTVGICFSSSTHKIPNVML 88

Query: 88  LAR--PAAVCDNARCGPATQKRESPPAEILELTRLLPLMFVKITIHNSVKKQLHLKLATG 145
           LA   P A  D      +     SPPAE L LTR LPL FV +++H++    L +KL +G
Sbjct: 89  LAHLTPGAQKDTETLFKSLLT--SPPAEKLVLTRFLPLQFVTLSVHDAENMSLKVKLVSG 146

Query: 146 RSFYLQLCPPSDASEDLFVHWENLVYIL 173
           R++YLQLC  +   + LF  W  L+ +L
Sbjct: 147 RAYYLQLCTSAYKQDTLFSQWVALISLL 174


>gi|76253859 hypothetical protein LOC112703 [Homo sapiens]
          Length = 231

 Score = 97.8 bits (242), Expect = 7e-21
 Identities = 60/148 (40%), Positives = 83/148 (56%), Gaps = 23/148 (15%)

Query: 27  KLQRQLYKGEYTIFRYAPMFESDFIQISKRGEVIDVHNRARMVTMGIVRTSPCLTLPDVM 86
           +LQR L  GE+  FR  P+FES+F+Q+++ GEV      A  VTMG+  +SP L LPD++
Sbjct: 95  RLQRYLQSGEFDQFRDFPIFESNFVQVTRLGEV------ANEVTMGVAASSPALELPDLL 148

Query: 87  LLARPAAVCDNARCGPATQKRESPPAEILELTRLLPLMFVKITIHNSVKKQLHLKLATGR 146
           LLA PA   +N                 L+L  L PL FV++ +H+  + QL +KL T R
Sbjct: 149 LLAGPAK--ENGH---------------LQLFGLFPLKFVQLFVHDKSRCQLEVKLNTSR 191

Query: 147 SFYLQLCPPSDASEDLFVHWENLVYILR 174
           +FYLQL  P    +  F  W  L+Y LR
Sbjct: 192 TFYLQLRAPLKTRDREFGQWVRLLYRLR 219


>gi|223972704 hypothetical protein LOC284418 [Homo sapiens]
          Length = 922

 Score = 97.4 bits (241), Expect = 1e-20
 Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 15/157 (9%)

Query: 25  MGKLQRQLYKGEYTIFRYAPMFESDFIQISKRGEVIDVHNRARMVTMGIVRTSPCLTLPD 84
           +G+LQ+ L KGEY   R  PMFES+F+Q++ +G  + V++R   + MG+  + P L LPD
Sbjct: 23  LGELQKTLQKGEYLPLRPLPMFESNFVQVTHQGGPVFVNHRTNRLAMGVAASLPGLVLPD 82

Query: 85  VMLLARPAAVCDNARCGPATQKRESPPAEILELTRLLPLMFVKITIHNSVKKQLHLKLAT 144
           ++L+ +PA               E      L LTR++PL  V + +H+    +L L+L +
Sbjct: 83  ILLIGQPA---------------EDRDCSGLVLTRMIPLDLVHLCVHDLSAWRLKLRLVS 127

Query: 145 GRSFYLQLCPPSDASEDLFVHWENLVYILRPPVEAYS 181
           GR +YL L  P +    LF  W  L+ +L+ P   ++
Sbjct: 128 GRQYYLALDAPDNEVGFLFHCWVRLINLLQEPAPTWT 164


>gi|193083150 hypothetical protein LOC346653 isoform b [Homo
           sapiens]
          Length = 300

 Score = 74.3 bits (181), Expect = 9e-14
 Identities = 47/149 (31%), Positives = 82/149 (55%), Gaps = 7/149 (4%)

Query: 26  GKLQRQLYKGEYTIFRYAPMFESDFIQISKRGEVIDVHNRARMVTMGIVRTSPCLTLPDV 85
           G L + ++  E+ +F  + +FES+FIQ++K G   DV   +  V +G+  + P L LP+V
Sbjct: 25  GLLCQLIHSPEFNLFSNSVVFESNFIQVTKPGNWRDVCEGSATVILGVTSSVPSLPLPNV 84

Query: 86  MLLARPAAVCDNARCGPATQKRESPPAEILELTRLLPLMFVKITIHNSVKKQLHLKLATG 145
           +L+A           GP T       A ++ L+RLLPL +V++ I++ +++ L ++  T 
Sbjct: 85  LLMANV-----TWPQGPFTTWSTPGDAPVINLSRLLPLKYVELRIYDRLQRILRVRTVTE 139

Query: 146 RSFYLQLCPPSDASEDLFVHWENLVYILR 174
           + +YL+L       E +F  W  LV IL+
Sbjct: 140 KIYYLKL--HEKHPEIVFQFWVRLVKILQ 166


>gi|14211935 testes development-related NYD-SP18 [Homo sapiens]
          Length = 344

 Score = 72.0 bits (175), Expect = 4e-13
 Identities = 50/182 (27%), Positives = 93/182 (51%), Gaps = 12/182 (6%)

Query: 13  QSSPAMGMFNTSMGKLQRQLYKGEYTIFRYAPMFESDFIQISKRGEVIDVHNRARMVTMG 72
           + +P  G+     G L R ++  E+ +F  + +FES+FIQ+ +     DV+  +  + +G
Sbjct: 45  EPNPGAGL-GVEEGLLCRVVHSPEFNLFLDSVVFESNFIQVKRGRNWRDVYKASNTMALG 103

Query: 73  IVRTSPCLTLPDVMLLARPAAVCDNARCGPATQKRESPP--AEILELTRLLPLMFVKITI 130
           +  + PCL LP+++L+A       + +      +  + P  A  + L R+LPL FV++ +
Sbjct: 104 VTSSVPCLPLPNILLMA-------SVKWHQGQNQTWNRPSIAPNIFLKRILPLRFVELQV 156

Query: 131 HNSVKKQLHLKLATGRSFYLQLCPPSDASEDLFVHWENLVYILRPPVEAYSDTRAILAGN 190
            +  ++ L L+  T + +YL+L P  D  E +F  W  LV IL+  +   +    IL  +
Sbjct: 157 CDHYQRILQLRTVTEKIYYLKLHP--DHPETVFHFWIRLVQILQKGLSITTKDPRILVTH 214

Query: 191 TL 192
            L
Sbjct: 215 CL 216


>gi|149192824 hypothetical protein LOC346653 isoform a [Homo
           sapiens]
          Length = 309

 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 47/158 (29%), Positives = 82/158 (51%), Gaps = 16/158 (10%)

Query: 26  GKLQRQLYKGEYTIFRYAPMFESDFIQ---------ISKRGEVIDVHNRARMVTMGIVRT 76
           G L + ++  E+ +F  + +FES+FIQ         ++K G   DV   +  V +G+  +
Sbjct: 25  GLLCQLIHSPEFNLFSNSVVFESNFIQTHVPEADFQVTKPGNWRDVCEGSATVILGVTSS 84

Query: 77  SPCLTLPDVMLLARPAAVCDNARCGPATQKRESPPAEILELTRLLPLMFVKITIHNSVKK 136
            P L LP+V+L+A           GP T       A ++ L+RLLPL +V++ I++ +++
Sbjct: 85  VPSLPLPNVLLMANVTWPQ-----GPFTTWSTPGDAPVINLSRLLPLKYVELRIYDRLQR 139

Query: 137 QLHLKLATGRSFYLQLCPPSDASEDLFVHWENLVYILR 174
            L ++  T + +YL+L       E +F  W  LV IL+
Sbjct: 140 ILRVRTVTEKIYYLKL--HEKHPEIVFQFWVRLVKILQ 175


>gi|194394141 nucleolar preribosomal-associated protein 1 [Homo
            sapiens]
          Length = 2271

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 33/127 (25%), Positives = 47/127 (37%), Gaps = 24/127 (18%)

Query: 97   NARCGPATQKRESPP--------------AEILELT-RLLPLMFVKITIHNSVK---KQL 138
            N R GPAT   ++PP              A++ E+T  LL L    +      K   K+ 
Sbjct: 1089 NRRAGPATSPPKTPPQLEALQELHPYMEGAQLREVTLALLSLPETHLVTQQPTKSPGKER 1148

Query: 139  HLKLATGRSFYLQLCPPSDASEDLFVHWENLVYILRPPVEAYSDTRAILAGNTLDSSVLE 198
            HL         L  C P D  +   + W +        V         LA + LD+ +L 
Sbjct: 1149 HLNALGKTLVQLLTCSPQDQLQSGELLWSS------EYVRGLGALLPTLAVDELDTVLLH 1202

Query: 199  EVQRSPV 205
             +QR PV
Sbjct: 1203 TLQRDPV 1209


>gi|59891448 rapamycin-insensitive companion of mTOR [Homo sapiens]
          Length = 1708

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 20/119 (16%)

Query: 141 KLATGRSFYLQLCPPSDASEDLFVHWENLVYILRPPVEAYSDTRAILAGN-------TLD 193
           KL    +F   LC    + E L  H+E+++  LR  +   ++ + + A           D
Sbjct: 56  KLGHLNNFTKLLCDIGHSEEKLGFHYEDIIICLR--LALLNEAKEVRAAGLRALRYLIQD 113

Query: 194 SSVLEEVQRSPVGYAMKFC---------EEKEQFRISR--LHMNAEMFGSTYCDYTIEI 241
           SS+L++V +  V Y +  C         E  +  R+ R  + +NA +F S+  +  I +
Sbjct: 114 SSILQKVLKLKVDYLIARCIDIQQSNEVERTQALRLVRKMITVNASLFPSSVTNSLIAV 172


>gi|22027541 programmed cell death 7 [Homo sapiens]
          Length = 485

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 152 LCPPSDASEDLFVHWENLVYILRPPVEAY-SDTRAILAGNTLDSSVLEEVQRSPVGYAMK 210
           +CPP+ A E    H + L  +++   E Y ++ RA+     L+    EE +R       K
Sbjct: 338 VCPPASADETFTHHLQRLRKLIKKRSELYEAEERALRV--MLEGEQEEERKRE---LEKK 392

Query: 211 FCEEKEQFRISRLHMNAEMFG 231
             +EKE+  + +  + +++FG
Sbjct: 393 QRKEKEKILLQKREIESKLFG 413


>gi|100913206 DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Homo
           sapiens]
          Length = 1270

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 12/36 (33%), Positives = 23/36 (63%)

Query: 164 VHWENLVYILRPPVEAYSDTRAILAGNTLDSSVLEE 199
           ++ + L+ +LR  V+AY + R +L   T+D+S+  E
Sbjct: 518 INTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCE 553


>gi|19115954 dynein, axonemal, heavy chain 5 [Homo sapiens]
          Length = 4624

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 123  LMFVKITIH-NSVKKQLHLKLATG-RSFYLQLCPPSDASEDLFVHWENLV 170
            L+ +KI I  N VK +  L L  G  S  L+ CPP  +   L + W NLV
Sbjct: 3898 LLTLKIDIQRNRVKHEEFLTLIKGGASLDLKACPPKPSKWILDITWLNLV 3947


>gi|161484640 neuromedin B receptor [Homo sapiens]
          Length = 390

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 123 LMFVKITIHNSVKKQLH----LKLATGRSFYLQLCPPSDASEDLFVHW 166
           +M VKI I NS  + +       LA G    L  C P DAS   F  W
Sbjct: 62  IMLVKIFITNSAMRSVPNIFISNLAAGDLLLLLTCVPVDASRYFFDEW 109


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,176,001
Number of Sequences: 37866
Number of extensions: 375576
Number of successful extensions: 699
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 678
Number of HSP's gapped (non-prelim): 15
length of query: 241
length of database: 18,247,518
effective HSP length: 99
effective length of query: 142
effective length of database: 14,498,784
effective search space: 2058827328
effective search space used: 2058827328
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.