Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 23199995
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23199995 Williams Beuren syndrome chromosome region 22
protein [Homo sapiens]
(281 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23199995 Williams Beuren syndrome chromosome region 22 protei... 576 e-165
gi|30795190 Williams-Beuren syndrome chromosome region 27 [Homo ... 42 5e-04
gi|40018642 hypothetical protein LOC79133 isoform 1 [Homo sapiens] 42 5e-04
gi|195927056 alkB, alkylation repair homolog 8 [Homo sapiens] 36 0.033
gi|239751049 PREDICTED: similar to ATPase, Ca++ transporting, fa... 34 0.16
gi|10835220 ATPase, Ca++ transporting, fast twitch 1 isoform b [... 34 0.16
gi|27886529 ATPase, Ca++ transporting, fast twitch 1 isoform a [... 34 0.16
gi|153251913 hypothetical protein LOC57604 isoform 1 [Homo sapiens] 34 0.16
gi|9506741 glycine N-methyltransferase [Homo sapiens] 33 0.28
gi|60685227 SECIS binding protein 2-like [Homo sapiens] 33 0.28
gi|28373103 ATPase, Ca++ transporting, ubiquitous isoform a [Hom... 32 0.81
gi|28373115 ATPase, Ca++ transporting, ubiquitous isoform c [Hom... 32 0.81
gi|28373113 ATPase, Ca++ transporting, ubiquitous isoform f [Hom... 32 0.81
gi|28373111 ATPase, Ca++ transporting, ubiquitous isoform c [Hom... 32 0.81
gi|28373109 ATPase, Ca++ transporting, ubiquitous isoform b [Hom... 32 0.81
gi|28373107 ATPase, Ca++ transporting, ubiquitous isoform d [Hom... 32 0.81
gi|28373105 ATPase, Ca++ transporting, ubiquitous isoform e [Hom... 32 0.81
gi|89242134 hypothetical protein LOC129450 [Homo sapiens] 30 2.4
gi|28626510 reticulocalbin 3, EF-hand calcium binding domain [Ho... 30 3.1
gi|239757894 PREDICTED: similar to Rhox homeobox family, member ... 29 4.0
gi|23943886 Rhox homeobox family, member 1 [Homo sapiens] 29 4.0
>gi|23199995 Williams Beuren syndrome chromosome region 22 protein
[Homo sapiens]
Length = 281
Score = 576 bits (1484), Expect = e-165
Identities = 281/281 (100%), Positives = 281/281 (100%)
Query: 1 MASRGRRPEHGGPPELFYDETEARKYVRNSRMIDIQTRMAGRALELLYLPENKPCYLLDI 60
MASRGRRPEHGGPPELFYDETEARKYVRNSRMIDIQTRMAGRALELLYLPENKPCYLLDI
Sbjct: 1 MASRGRRPEHGGPPELFYDETEARKYVRNSRMIDIQTRMAGRALELLYLPENKPCYLLDI 60
Query: 61 GCGTGLSGSYLSDEGHYWVGLDISPAMLDEAVDREIEGDLLLGDMGQGIPFKPGTFDGCI 120
GCGTGLSGSYLSDEGHYWVGLDISPAMLDEAVDREIEGDLLLGDMGQGIPFKPGTFDGCI
Sbjct: 61 GCGTGLSGSYLSDEGHYWVGLDISPAMLDEAVDREIEGDLLLGDMGQGIPFKPGTFDGCI 120
Query: 121 SISAVQWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVLQLYPENSEQLELITTQATK 180
SISAVQWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVLQLYPENSEQLELITTQATK
Sbjct: 121 SISAVQWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVLQLYPENSEQLELITTQATK 180
Query: 181 AGFSGGMVVDYPNSAKAKKFYLCLFSGPSTFIPEGLSENQDEVEPRESVFTNERFPLRMS 240
AGFSGGMVVDYPNSAKAKKFYLCLFSGPSTFIPEGLSENQDEVEPRESVFTNERFPLRMS
Sbjct: 181 AGFSGGMVVDYPNSAKAKKFYLCLFSGPSTFIPEGLSENQDEVEPRESVFTNERFPLRMS 240
Query: 241 RRGMVRKSRAWVLEKKERHRRQGREVRPDTQYTGRKRKPRF 281
RRGMVRKSRAWVLEKKERHRRQGREVRPDTQYTGRKRKPRF
Sbjct: 241 RRGMVRKSRAWVLEKKERHRRQGREVRPDTQYTGRKRKPRF 281
>gi|30795190 Williams-Beuren syndrome chromosome region 27 [Homo
sapiens]
Length = 245
Score = 42.4 bits (98), Expect = 5e-04
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 57 LLDIGCGTGLSGSYLSDEGHYWV-GLDISPAMLDEAVDREIEGDLLLGDMGQ-GIPFKPG 114
+LD+ CGTGL + L G + G+D SP ML++A + L L +GQ +P G
Sbjct: 71 ILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQAQAPGLYQRLSLCTLGQEPLPSPEG 130
Query: 115 TFDGCISISAV---QWLCNA 131
TFD + + A+ Q CNA
Sbjct: 131 TFDAVLIVGALSDGQVPCNA 150
>gi|40018642 hypothetical protein LOC79133 isoform 1 [Homo sapiens]
Length = 345
Score = 42.4 bits (98), Expect = 5e-04
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 34 DIQTRMAGRALELLYLPENKPCYLLDIGCGTGLSGSYLSDE--GHYWVGLDISPAMLDEA 91
++ +R+A R ++ P N P LD+GCG G YL+ E G ++ DI+ L +
Sbjct: 74 EVGSRIADRVYDI---PRNFPL-ALDLGCGRGYIAQYLNKETIGKFFQA-DIAENALKNS 128
Query: 92 VDREIEGDLLLGDMGQGIPFKPGTFDGCISISAVQWL 128
+ EI +L D + +PFK TFD +S ++ W+
Sbjct: 129 SETEIPTVSVLAD-EEFLPFKENTFDLVVSSLSLHWV 164
>gi|195927056 alkB, alkylation repair homolog 8 [Homo sapiens]
Length = 664
Score = 36.2 bits (82), Expect = 0.033
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 59 DIGCGTGLSGSYLS-DEGHYWVGLDISPAMLDEAVDREIEGDLLLGDMGQGIPFKPGTFD 117
DIGCG +G YL ++ Y +G D S ++D +R+ + + +P + G+ D
Sbjct: 412 DIGCG---NGKYLGINKELYMIGCDRSQNLVDICRERQFQAFVC---DALAVPVRSGSCD 465
Query: 118 GCISISAVQWLCNANKK 134
CISI+ + A ++
Sbjct: 466 ACISIAVIHHFATAERR 482
>gi|239751049 PREDICTED: similar to ATPase, Ca++ transporting, fast
twitch 1 [Homo sapiens]
Length = 879
Score = 33.9 bits (76), Expect = 0.16
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 97 EGDLLLGDMGQGIPFKPGTFDGCISISAVQWLCNANKKSENPAKRLY 143
EG++L D P +PG +DG + ++ + LCN + N AK +Y
Sbjct: 647 EGEVLKNDK----PVRPGQYDGLVELATICALCNDSSLDFNEAKGVY 689
>gi|10835220 ATPase, Ca++ transporting, fast twitch 1 isoform b
[Homo sapiens]
Length = 994
Score = 33.9 bits (76), Expect = 0.16
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 97 EGDLLLGDMGQGIPFKPGTFDGCISISAVQWLCNANKKSENPAKRLY 143
EG++L D P +PG +DG + ++ + LCN + N AK +Y
Sbjct: 392 EGEVLKNDK----PVRPGQYDGLVELATICALCNDSSLDFNEAKGVY 434
>gi|27886529 ATPase, Ca++ transporting, fast twitch 1 isoform a
[Homo sapiens]
Length = 1001
Score = 33.9 bits (76), Expect = 0.16
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 97 EGDLLLGDMGQGIPFKPGTFDGCISISAVQWLCNANKKSENPAKRLY 143
EG++L D P +PG +DG + ++ + LCN + N AK +Y
Sbjct: 392 EGEVLKNDK----PVRPGQYDGLVELATICALCNDSSLDFNEAKGVY 434
>gi|153251913 hypothetical protein LOC57604 isoform 1 [Homo sapiens]
Length = 454
Score = 33.9 bits (76), Expect = 0.16
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 34 DIQTRMAGRALELLYLPENKPCYLL-DIGCGTGLSGSYLSDEGH-YWVGLDISPAMLDEA 91
D+Q++ R + +L E KP L+ DIGCGT G YL + VG D +++ A
Sbjct: 26 DLQSKAWPRVRQ--FLQEQKPGSLIADIGCGT---GKYLKVNSQVHTVGCDYCGPLVEIA 80
Query: 92 VDREIEGDLLLGDMGQGIPFKPGTFDGCISISAV 125
+R E ++ D +PF+ FD ISI +
Sbjct: 81 RNRGCEA--MVCD-NLNLPFRDEGFDAIISIGVI 111
>gi|9506741 glycine N-methyltransferase [Homo sapiens]
Length = 295
Score = 33.1 bits (74), Expect = 0.28
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 12 GPPELFYDETEARKYVRNSRMIDIQTRMAGRALELLYLPENKPCY-LLDIGCGTGLSGSY 70
G P+ + D AR V + D ++R A LL L C +LD+ CGTG+
Sbjct: 17 GLPDQYADGEAAR--VWQLYIGDTRSRTAEYKAWLLGLLRQHGCQRVLDVACGTGVDSIM 74
Query: 71 LSDEGHYWVGLDISPAMLDEAV 92
L +EG +D S ML A+
Sbjct: 75 LVEEGFSVTSVDASDKMLKYAL 96
>gi|60685227 SECIS binding protein 2-like [Homo sapiens]
Length = 1056
Score = 33.1 bits (74), Expect = 0.28
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 169 EQLELITTQATKAGFSGGMVVDYPNSAKAKKFYLCLFSGPSTFIPEGLSENQDEVEPRES 228
+ LE + Q+T+ G G D NS+ + S ST +P L E +DE E E
Sbjct: 904 DDLEWASQQSTETGSLDGSCRDLLNSS--------ITSTTSTLVPGMLEEEEDEDEEEEE 955
Query: 229 VFTNERFPLRMSRRGMVRKSRAWVLE 254
+T+E + + + +WV E
Sbjct: 956 DYTHEPISVEVQLNSRI---ESWVSE 978
>gi|28373103 ATPase, Ca++ transporting, ubiquitous isoform a [Homo
sapiens]
Length = 999
Score = 31.6 bits (70), Expect = 0.81
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 97 EGDLLLGDMGQGIPFKPGTFDGCISISAVQWLCNANKKSENPAKRLY 143
EG++ GD P + G FDG + ++ + LCN + N AK +Y
Sbjct: 392 EGEVRQGDQ----PVRCGQFDGLVELATICALCNDSALDYNEAKGVY 434
>gi|28373115 ATPase, Ca++ transporting, ubiquitous isoform c [Homo
sapiens]
Length = 1029
Score = 31.6 bits (70), Expect = 0.81
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 97 EGDLLLGDMGQGIPFKPGTFDGCISISAVQWLCNANKKSENPAKRLY 143
EG++ GD P + G FDG + ++ + LCN + N AK +Y
Sbjct: 392 EGEVRQGDQ----PVRCGQFDGLVELATICALCNDSALDYNEAKGVY 434
>gi|28373113 ATPase, Ca++ transporting, ubiquitous isoform f [Homo
sapiens]
Length = 998
Score = 31.6 bits (70), Expect = 0.81
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 97 EGDLLLGDMGQGIPFKPGTFDGCISISAVQWLCNANKKSENPAKRLY 143
EG++ GD P + G FDG + ++ + LCN + N AK +Y
Sbjct: 392 EGEVRQGDQ----PVRCGQFDGLVELATICALCNDSALDYNEAKGVY 434
>gi|28373111 ATPase, Ca++ transporting, ubiquitous isoform c [Homo
sapiens]
Length = 1029
Score = 31.6 bits (70), Expect = 0.81
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 97 EGDLLLGDMGQGIPFKPGTFDGCISISAVQWLCNANKKSENPAKRLY 143
EG++ GD P + G FDG + ++ + LCN + N AK +Y
Sbjct: 392 EGEVRQGDQ----PVRCGQFDGLVELATICALCNDSALDYNEAKGVY 434
>gi|28373109 ATPase, Ca++ transporting, ubiquitous isoform b [Homo
sapiens]
Length = 1043
Score = 31.6 bits (70), Expect = 0.81
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 97 EGDLLLGDMGQGIPFKPGTFDGCISISAVQWLCNANKKSENPAKRLY 143
EG++ GD P + G FDG + ++ + LCN + N AK +Y
Sbjct: 392 EGEVRQGDQ----PVRCGQFDGLVELATICALCNDSALDYNEAKGVY 434
>gi|28373107 ATPase, Ca++ transporting, ubiquitous isoform d [Homo
sapiens]
Length = 1044
Score = 31.6 bits (70), Expect = 0.81
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 97 EGDLLLGDMGQGIPFKPGTFDGCISISAVQWLCNANKKSENPAKRLY 143
EG++ GD P + G FDG + ++ + LCN + N AK +Y
Sbjct: 392 EGEVRQGDQ----PVRCGQFDGLVELATICALCNDSALDYNEAKGVY 434
>gi|28373105 ATPase, Ca++ transporting, ubiquitous isoform e [Homo
sapiens]
Length = 1052
Score = 31.6 bits (70), Expect = 0.81
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 97 EGDLLLGDMGQGIPFKPGTFDGCISISAVQWLCNANKKSENPAKRLY 143
EG++ GD P + G FDG + ++ + LCN + N AK +Y
Sbjct: 392 EGEVRQGDQ----PVRCGQFDGLVELATICALCNDSALDYNEAKGVY 434
>gi|89242134 hypothetical protein LOC129450 [Homo sapiens]
Length = 315
Score = 30.0 bits (66), Expect = 2.4
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 137 NPAKRLYCFFASLFSVLVR--GSRAVLQLYPENSEQLELITTQATKAGFSGGMVVDYPNS 194
+P +L+ + + ++L++ G + V+ P +++ L L T++ + YP
Sbjct: 152 SPGLQLWTHYDVMDNLLIQVTGKKRVVLFSPRDAQYLYLKGTKSEVLNIDNPDLAKYPLF 211
Query: 195 AKAKKFYLCLFSGPSTFIP 213
+KA+++ L +G FIP
Sbjct: 212 SKARRYECSLEAGDVLFIP 230
>gi|28626510 reticulocalbin 3, EF-hand calcium binding domain [Homo
sapiens]
Length = 328
Score = 29.6 bits (65), Expect = 3.1
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 211 FIPEGLSENQDEVEPRESVFTNERFPLRMSRRG------MVRKSRAWVLEKKERHRRQGR 264
F+ +++ D++ P ES R RM R G + + RAW+ ++RH R
Sbjct: 59 FLGREVAKEFDQLTPEESQARLGRIVDRMDRAGDGDGWVSLAELRAWIAHTQQRHIRDSV 118
Query: 265 EVRPDTQYTGR 275
DT T R
Sbjct: 119 SAAWDTYDTDR 129
>gi|239757894 PREDICTED: similar to Rhox homeobox family, member 1
[Homo sapiens]
Length = 177
Score = 29.3 bits (64), Expect = 4.0
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 222 EVEPRESVFTNERFPLRMSRRGMVR-------KSRAWVLEKKERHRRQGREV 266
+VE ESVF + ++P +RR + K R W K+ R RR RE+
Sbjct: 22 QVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRRHQREL 73
>gi|23943886 Rhox homeobox family, member 1 [Homo sapiens]
Length = 184
Score = 29.3 bits (64), Expect = 4.0
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 222 EVEPRESVFTNERFPLRMSRRGMVR-------KSRAWVLEKKERHRRQGREV 266
+VE ESVF + ++P +RR + K R W K+ R RR RE+
Sbjct: 114 QVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRRHQREL 165
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,598,174
Number of Sequences: 37866
Number of extensions: 507475
Number of successful extensions: 1119
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1105
Number of HSP's gapped (non-prelim): 21
length of query: 281
length of database: 18,247,518
effective HSP length: 101
effective length of query: 180
effective length of database: 14,423,052
effective search space: 2596149360
effective search space used: 2596149360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.