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Search of human proteins with 228480258
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|228480258 basic, immunoglobulin-like variable motif
containing isoform b [Homo sapiens]
(281 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|228480258 basic, immunoglobulin-like variable motif containin... 598 e-171
gi|22095355 basic, immunoglobulin-like variable motif containing... 577 e-165
gi|27437036 colony stimulating factor 2 receptor alpha chain iso... 31 1.4
gi|62122917 filaggrin family member 2 [Homo sapiens] 30 1.8
gi|20070195 colony stimulating factor 2 receptor alpha chain iso... 30 3.1
gi|238908521 colony stimulating factor 2 receptor alpha chain is... 30 3.1
gi|238908519 colony stimulating factor 2 receptor alpha chain is... 30 3.1
gi|238908517 colony stimulating factor 2 receptor alpha chain is... 30 3.1
gi|238908515 colony stimulating factor 2 receptor alpha chain is... 30 3.1
gi|27437034 colony stimulating factor 2 receptor alpha chain iso... 30 3.1
gi|27437032 colony stimulating factor 2 receptor alpha chain iso... 30 3.1
gi|239752879 PREDICTED: similar to elongin C [Homo sapiens] 28 9.0
gi|239747430 PREDICTED: similar to elongin C [Homo sapiens] 28 9.0
gi|27437040 colony stimulating factor 2 receptor alpha chain iso... 28 9.0
>gi|228480258 basic, immunoglobulin-like variable motif containing
isoform b [Homo sapiens]
Length = 281
Score = 598 bits (1543), Expect = e-171
Identities = 281/281 (100%), Positives = 281/281 (100%)
Query: 1 MGAGNLPPITQEEALHILGFQPPFEDIRFGPFTGNTTLMRWFRQINDHFHVKGCSYVLYK 60
MGAGNLPPITQEEALHILGFQPPFEDIRFGPFTGNTTLMRWFRQINDHFHVKGCSYVLYK
Sbjct: 1 MGAGNLPPITQEEALHILGFQPPFEDIRFGPFTGNTTLMRWFRQINDHFHVKGCSYVLYK 60
Query: 61 PHGKNKTAGETASGALSKLTRGLKDESLAYIYHCQNHYFCPIGFEATPVKANKAFSRGPL 120
PHGKNKTAGETASGALSKLTRGLKDESLAYIYHCQNHYFCPIGFEATPVKANKAFSRGPL
Sbjct: 61 PHGKNKTAGETASGALSKLTRGLKDESLAYIYHCQNHYFCPIGFEATPVKANKAFSRGPL 120
Query: 121 SPQEVEYWILIGESSRKHPAIHCKKWADIVTDLNTQNPEYLDIRHLERGLQYRKTKKPTF 180
SPQEVEYWILIGESSRKHPAIHCKKWADIVTDLNTQNPEYLDIRHLERGLQYRKTKKPTF
Sbjct: 121 SPQEVEYWILIGESSRKHPAIHCKKWADIVTDLNTQNPEYLDIRHLERGLQYRKTKKPTF 180
Query: 181 FSSQVGGNLHCIIAFQRLNWQRFGLWNFPFGTIRQESQPPTHAQGIAKSESEDNISKKQH 240
FSSQVGGNLHCIIAFQRLNWQRFGLWNFPFGTIRQESQPPTHAQGIAKSESEDNISKKQH
Sbjct: 181 FSSQVGGNLHCIIAFQRLNWQRFGLWNFPFGTIRQESQPPTHAQGIAKSESEDNISKKQH 240
Query: 241 GRLGRSFSASFHQDSAWKKMSSIHERRNSGYQGYSDYDGND 281
GRLGRSFSASFHQDSAWKKMSSIHERRNSGYQGYSDYDGND
Sbjct: 241 GRLGRSFSASFHQDSAWKKMSSIHERRNSGYQGYSDYDGND 281
>gi|22095355 basic, immunoglobulin-like variable motif containing
isoform a [Homo sapiens]
Length = 503
Score = 577 bits (1488), Expect = e-165
Identities = 274/281 (97%), Positives = 274/281 (97%), Gaps = 7/281 (2%)
Query: 1 MGAGNLPPITQEEALHILGFQPPFEDIRFGPFTGNTTLMRWFRQINDHFHVKGCSYVLYK 60
MGAGNLPPITQEEALHILGFQPPFEDIRFGPFTGNTTLMRWFRQINDHFHVKGCSYVLYK
Sbjct: 230 MGAGNLPPITQEEALHILGFQPPFEDIRFGPFTGNTTLMRWFRQINDHFHVKGCSYVLYK 289
Query: 61 PHGKNKTAGETASGALSKLTRGLKDESLAYIYHCQNHYFCPIGFEATPVKANKAFSRGPL 120
PHGKNKTAGETASGALSKLTRGLKDESLAYIYHCQNHYFCPIGFEATPVKANKAFSRGPL
Sbjct: 290 PHGKNKTAGETASGALSKLTRGLKDESLAYIYHCQNHYFCPIGFEATPVKANKAFSRGPL 349
Query: 121 SPQEVEYWILIGESSRKHPAIHCKKWADIVTDLNTQNPEYLDIRHLERGLQYRKTKKPTF 180
SPQEVEYWILIGESSRKHPAIHCKKWADIVTDLNTQNPEYLDIRHLERGLQYRKTKK
Sbjct: 350 SPQEVEYWILIGESSRKHPAIHCKKWADIVTDLNTQNPEYLDIRHLERGLQYRKTKK--- 406
Query: 181 FSSQVGGNLHCIIAFQRLNWQRFGLWNFPFGTIRQESQPPTHAQGIAKSESEDNISKKQH 240
VGGNLHCIIAFQRLNWQRFGLWNFPFGTIRQESQPPTHAQGIAKSESEDNISKKQH
Sbjct: 407 ----VGGNLHCIIAFQRLNWQRFGLWNFPFGTIRQESQPPTHAQGIAKSESEDNISKKQH 462
Query: 241 GRLGRSFSASFHQDSAWKKMSSIHERRNSGYQGYSDYDGND 281
GRLGRSFSASFHQDSAWKKMSSIHERRNSGYQGYSDYDGND
Sbjct: 463 GRLGRSFSASFHQDSAWKKMSSIHERRNSGYQGYSDYDGND 503
>gi|27437036 colony stimulating factor 2 receptor alpha chain
isoform c precursor [Homo sapiens]
Length = 333
Score = 30.8 bits (68), Expect = 1.4
Identities = 42/190 (22%), Positives = 75/190 (39%), Gaps = 26/190 (13%)
Query: 112 NKAFSRGPLSPQEVEYWILIGESSRKH----------PAIHCKKWADIVTDLNTQNPEYL 161
N ++RGP +P++V+Y++ I S R+ H D ++ L ++N +
Sbjct: 135 NCTWARGPTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFLV 194
Query: 162 DIRHLERGLQY----RKTKKPTFFSSQVG-----GNLHCIIAF-QRLNWQRFGLWNFPF- 210
+ E G+Q+ TKK F+ HC++ + Q +Q+ +F +
Sbjct: 195 NGTSREIGIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLVRWKQPRTYQKLSYLDFQYQ 254
Query: 211 -GTIRQESQPPTHAQGIAKSESEDN----ISKKQHGRLGRSFSASFHQDSAWKKMSSIHE 265
R+ +QP T I S +N S + + A+ + W S E
Sbjct: 255 LDVHRKNTQPGTENLLINVSGDLENRYNFPSSEPRAKHSVKIRAADVRILNWSSWSEAIE 314
Query: 266 RRNSGYQGYS 275
+ GY G S
Sbjct: 315 FGSLGYSGCS 324
>gi|62122917 filaggrin family member 2 [Homo sapiens]
Length = 2391
Score = 30.4 bits (67), Expect = 1.8
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 211 GTIRQESQPPTHAQ-GIAKSESEDNISKKQ---HGRLGRSFS-ASFHQDSAWKKMSSIHE 265
G+ R +SQ TH Q G ES + + HG+ G + A +H + ++ SS
Sbjct: 1436 GSHRPQSQEQTHGQAGSQHGESGSTVHGRHGTTHGQTGDTTRHAHYHHGKSTQRGSSTTG 1495
Query: 266 RRNSGYQGYSD 276
RR SG+ SD
Sbjct: 1496 RRGSGHSESSD 1506
>gi|20070195 colony stimulating factor 2 receptor alpha chain
isoform a precursor [Homo sapiens]
Length = 400
Score = 29.6 bits (65), Expect = 3.1
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 22/132 (16%)
Query: 112 NKAFSRGPLSPQEVEYWILIGESSRKH----------PAIHCKKWADIVTDLNTQNPEYL 161
N ++RGP +P++V+Y++ I S R+ H D ++ L ++N +
Sbjct: 135 NCTWARGPTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFLV 194
Query: 162 DIRHLERGLQY----RKTKKPTFFSSQVG-----GNLHCIIAF-QRLNWQRFGLWNFPF- 210
+ E G+Q+ TKK F+ HC++ + Q +Q+ +F +
Sbjct: 195 NGTSREIGIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLVRWKQPRTYQKLSYLDFQYQ 254
Query: 211 -GTIRQESQPPT 221
R+ +QP T
Sbjct: 255 LDVHRKNTQPGT 266
>gi|238908521 colony stimulating factor 2 receptor alpha chain
isoform h [Homo sapiens]
Length = 267
Score = 29.6 bits (65), Expect = 3.1
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 22/132 (16%)
Query: 112 NKAFSRGPLSPQEVEYWILIGESSRKH----------PAIHCKKWADIVTDLNTQNPEYL 161
N ++RGP +P++V+Y++ I S R+ H D ++ L ++N +
Sbjct: 2 NCTWARGPTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFLV 61
Query: 162 DIRHLERGLQY----RKTKKPTFFSSQVG-----GNLHCIIAF-QRLNWQRFGLWNFPF- 210
+ E G+Q+ TKK F+ HC++ + Q +Q+ +F +
Sbjct: 62 NGTSREIGIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLVRWKQPRTYQKLSYLDFQYQ 121
Query: 211 -GTIRQESQPPT 221
R+ +QP T
Sbjct: 122 LDVHRKNTQPGT 133
>gi|238908519 colony stimulating factor 2 receptor alpha chain
isoform g precursor [Homo sapiens]
Length = 410
Score = 29.6 bits (65), Expect = 3.1
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 22/132 (16%)
Query: 112 NKAFSRGPLSPQEVEYWILIGESSRKH----------PAIHCKKWADIVTDLNTQNPEYL 161
N ++RGP +P++V+Y++ I S R+ H D ++ L ++N +
Sbjct: 135 NCTWARGPTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFLV 194
Query: 162 DIRHLERGLQY----RKTKKPTFFSSQVG-----GNLHCIIAF-QRLNWQRFGLWNFPF- 210
+ E G+Q+ TKK F+ HC++ + Q +Q+ +F +
Sbjct: 195 NGTSREIGIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLVRWKQPRTYQKLSYLDFQYQ 254
Query: 211 -GTIRQESQPPT 221
R+ +QP T
Sbjct: 255 LDVHRKNTQPGT 266
>gi|238908517 colony stimulating factor 2 receptor alpha chain
isoform f precursor [Homo sapiens]
Length = 434
Score = 29.6 bits (65), Expect = 3.1
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 22/132 (16%)
Query: 112 NKAFSRGPLSPQEVEYWILIGESSRKH----------PAIHCKKWADIVTDLNTQNPEYL 161
N ++RGP +P++V+Y++ I S R+ H D ++ L ++N +
Sbjct: 135 NCTWARGPTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFLV 194
Query: 162 DIRHLERGLQY----RKTKKPTFFSSQVG-----GNLHCIIAF-QRLNWQRFGLWNFPF- 210
+ E G+Q+ TKK F+ HC++ + Q +Q+ +F +
Sbjct: 195 NGTSREIGIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLVRWKQPRTYQKLSYLDFQYQ 254
Query: 211 -GTIRQESQPPT 221
R+ +QP T
Sbjct: 255 LDVHRKNTQPGT 266
>gi|238908515 colony stimulating factor 2 receptor alpha chain
isoform a precursor [Homo sapiens]
Length = 400
Score = 29.6 bits (65), Expect = 3.1
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 22/132 (16%)
Query: 112 NKAFSRGPLSPQEVEYWILIGESSRKH----------PAIHCKKWADIVTDLNTQNPEYL 161
N ++RGP +P++V+Y++ I S R+ H D ++ L ++N +
Sbjct: 135 NCTWARGPTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFLV 194
Query: 162 DIRHLERGLQY----RKTKKPTFFSSQVG-----GNLHCIIAF-QRLNWQRFGLWNFPF- 210
+ E G+Q+ TKK F+ HC++ + Q +Q+ +F +
Sbjct: 195 NGTSREIGIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLVRWKQPRTYQKLSYLDFQYQ 254
Query: 211 -GTIRQESQPPT 221
R+ +QP T
Sbjct: 255 LDVHRKNTQPGT 266
>gi|27437034 colony stimulating factor 2 receptor alpha chain
isoform b precursor [Homo sapiens]
Length = 377
Score = 29.6 bits (65), Expect = 3.1
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 22/132 (16%)
Query: 112 NKAFSRGPLSPQEVEYWILIGESSRKH----------PAIHCKKWADIVTDLNTQNPEYL 161
N ++RGP +P++V+Y++ I S R+ H D ++ L ++N +
Sbjct: 135 NCTWARGPTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFLV 194
Query: 162 DIRHLERGLQY----RKTKKPTFFSSQVG-----GNLHCIIAF-QRLNWQRFGLWNFPF- 210
+ E G+Q+ TKK F+ HC++ + Q +Q+ +F +
Sbjct: 195 NGTSREIGIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLVRWKQPRTYQKLSYLDFQYQ 254
Query: 211 -GTIRQESQPPT 221
R+ +QP T
Sbjct: 255 LDVHRKNTQPGT 266
>gi|27437032 colony stimulating factor 2 receptor alpha chain
isoform a precursor [Homo sapiens]
Length = 400
Score = 29.6 bits (65), Expect = 3.1
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 22/132 (16%)
Query: 112 NKAFSRGPLSPQEVEYWILIGESSRKH----------PAIHCKKWADIVTDLNTQNPEYL 161
N ++RGP +P++V+Y++ I S R+ H D ++ L ++N +
Sbjct: 135 NCTWARGPTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFLV 194
Query: 162 DIRHLERGLQY----RKTKKPTFFSSQVG-----GNLHCIIAF-QRLNWQRFGLWNFPF- 210
+ E G+Q+ TKK F+ HC++ + Q +Q+ +F +
Sbjct: 195 NGTSREIGIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLVRWKQPRTYQKLSYLDFQYQ 254
Query: 211 -GTIRQESQPPT 221
R+ +QP T
Sbjct: 255 LDVHRKNTQPGT 266
>gi|239752879 PREDICTED: similar to elongin C [Homo sapiens]
Length = 269
Score = 28.1 bits (61), Expect = 9.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 42 FRQINDHFHVKGCSYVLYKPHGKNKT 67
FR+I+ H K C YV YK H N +
Sbjct: 219 FREISSHVLSKVCMYVTYKGHYTNSS 244
>gi|239747430 PREDICTED: similar to elongin C [Homo sapiens]
Length = 269
Score = 28.1 bits (61), Expect = 9.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 42 FRQINDHFHVKGCSYVLYKPHGKNKT 67
FR+I+ H K C YV YK H N +
Sbjct: 219 FREISSHVLSKVCMYVTYKGHYTNSS 244
>gi|27437040 colony stimulating factor 2 receptor alpha chain
isoform e precursor [Homo sapiens]
Length = 233
Score = 28.1 bits (61), Expect = 9.0
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 112 NKAFSRGPLSPQEVEYWILIGESSRK 137
N ++RGP +P++V+Y++ I S R+
Sbjct: 135 NCTWARGPTAPRDVQYFLYIRNSKRR 160
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,115,366
Number of Sequences: 37866
Number of extensions: 539277
Number of successful extensions: 1107
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1091
Number of HSP's gapped (non-prelim): 18
length of query: 281
length of database: 18,247,518
effective HSP length: 101
effective length of query: 180
effective length of database: 14,423,052
effective search space: 2596149360
effective search space used: 2596149360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.