Search of human proteins with 22749509

Search of human proteins with 22749509

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|22749509 hypothetical protein LOC255119 [Homo sapiens]
         (233 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|22749509 hypothetical protein LOC255119 [Homo sapiens]             461   e-130
gi|7019499 peroxisome proliferator-activated receptor gamma, coa...    30   1.4  
gi|5729953 nuclear distribution gene C homolog [Homo sapiens]          30   1.8  
gi|196123581 cytochrome c oxidase subunit I [Homo sapiens neande...    30   2.3  
gi|251831109 cytochrome c oxidase subunit I [Homo sapiens]             30   2.3  
gi|5453726 leucine rich repeat (in FLII) interacting protein 2 i...    30   2.3  
gi|38348729 hypothetical protein LOC203238 [Homo sapiens]              29   3.0  
gi|183979982 chemokine (C-C motif) receptor 2 isoform B [Homo sa...    29   3.9  
gi|183979980 chemokine (C-C motif) receptor 2 isoform A [Homo sa...    29   3.9  
gi|148596944 C2 calcium-dependent domain containing 3 [Homo sapi...    29   3.9  
gi|17136078 VGF nerve growth factor inducible precursor [Homo sa...    28   5.2  
gi|21389613 tektin 4 [Homo sapiens]                                    28   5.2  
gi|108773808 hypothetical protein LOC51244 [Homo sapiens]              28   6.7  
gi|226246537 zinc finger protein 407 isoform 3 [Homo sapiens]          28   8.8  
gi|226246535 zinc finger protein 407 isoform 2 [Homo sapiens]          28   8.8  
gi|74048554 cancer susceptibility candidate 5 isoform 2 [Homo sa...    28   8.8  
gi|74048514 cancer susceptibility candidate 5 isoform 1 [Homo sa...    28   8.8  
gi|134133288 zinc finger protein 407 isoform 1 [Homo sapiens]          28   8.8  

>gi|22749509 hypothetical protein LOC255119 [Homo sapiens]
          Length = 233

 Score =  461 bits (1187), Expect = e-130
 Identities = 233/233 (100%), Positives = 233/233 (100%)

Query: 1   MDQEEGLKALDNIVTQFNAYEDFLDSQITTVDLYYLEDETLARQLVELGYRGTGERVKRE 60
           MDQEEGLKALDNIVTQFNAYEDFLDSQITTVDLYYLEDETLARQLVELGYRGTGERVKRE
Sbjct: 1   MDQEEGLKALDNIVTQFNAYEDFLDSQITTVDLYYLEDETLARQLVELGYRGTGERVKRE 60

Query: 61  DFEARKAAIEIARLAERAQQKTLTSAGKDLQDNFLTALAMREEDNRSGKLSSVIFIRDRN 120
           DFEARKAAIEIARLAERAQQKTLTSAGKDLQDNFLTALAMREEDNRSGKLSSVIFIRDRN
Sbjct: 61  DFEARKAAIEIARLAERAQQKTLTSAGKDLQDNFLTALAMREEDNRSGKLSSVIFIRDRN 120

Query: 121 SHGQEISGYIDYAHRLKTEDFEVYFTGKKRLLPRPTDISFYNWDADIAVSNSSPNYQVIA 180
           SHGQEISGYIDYAHRLKTEDFEVYFTGKKRLLPRPTDISFYNWDADIAVSNSSPNYQVIA
Sbjct: 121 SHGQEISGYIDYAHRLKTEDFEVYFTGKKRLLPRPTDISFYNWDADIAVSNSSPNYQVIA 180

Query: 181 DNPEGLLFRYKRDRKILNVDPKAQPGDNSTRITILTELYIQAVIFDHISRRKT 233
           DNPEGLLFRYKRDRKILNVDPKAQPGDNSTRITILTELYIQAVIFDHISRRKT
Sbjct: 181 DNPEGLLFRYKRDRKILNVDPKAQPGDNSTRITILTELYIQAVIFDHISRRKT 233


>gi|7019499 peroxisome proliferator-activated receptor gamma,
           coactivator 1 alpha [Homo sapiens]
          Length = 798

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 17/113 (15%)

Query: 55  ERVKREDF--EARKAAIEIARLAERAQQKTLTS-----AGKDLQDNFLTALAMREEDNRS 107
           ER+KRE++  E  K   E A+  ER +QK +        GK   D   T L  R E    
Sbjct: 643 ERLKREEYRREYEKRESERAKQRERQRQKAIEERRVIYVGKIRPDTTRTELRDRFEVFGE 702

Query: 108 GKLSSVIFIRDRNSHGQEISGYI---------DYAHRLKTE-DFEVYFTGKKR 150
            +  +V    D +S+G     Y           Y  R   E DFE+YF G+K+
Sbjct: 703 IEECTVNLRDDGDSYGFITYRYTCDAFAALENGYTLRRSNETDFELYFCGRKQ 755


>gi|5729953 nuclear distribution gene C homolog [Homo sapiens]
          Length = 331

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 27/155 (17%)

Query: 32  DLYYLEDETLARQLV--------ELGYRGTGERVKREDFEARKAAIEIARLAERAQQKTL 83
           D +   +E +A +L+        +L  +   E+  R++ E R+ A   ARLA+ A+ +T 
Sbjct: 41  DFFIGGEEGMAEKLITQTFSHHNQLAQKTRREKRARQEAERREKAERAARLAKEAKSETS 100

Query: 84  TSAGKDLQDNFLTALAMREEDNRSGKLSSVIFIRDRNSHGQEISGYIDYAHRLKT-EDFE 142
               K+L D     L +  +  +  +          N   Q  +G +D   +  T ED E
Sbjct: 101 GPQIKELTDEEAERLQLEIDQKKDAE----------NHEAQLKNGSLDSPGKQDTEEDEE 150

Query: 143 VYFTGKKRLLP---RPTDISFYNW-----DADIAV 169
                K +L P      D+  Y W     + D+AV
Sbjct: 151 EDEKDKGKLKPNLGNGADLPNYRWTQTLSELDLAV 185


>gi|196123581 cytochrome c oxidase subunit I [Homo sapiens
           neanderthalensis]
          Length = 513

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 128 GYIDYAHRLKTEDFEV----YFTGKKRLLPRPTDISFYNWDADIAVSN 171
           G+I +AH + T   +V    YFT    ++  PT +  ++W A +  SN
Sbjct: 284 GFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGSN 331


>gi|251831109 cytochrome c oxidase subunit I [Homo sapiens]
          Length = 513

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 128 GYIDYAHRLKTEDFEV----YFTGKKRLLPRPTDISFYNWDADIAVSN 171
           G+I +AH + T   +V    YFT    ++  PT +  ++W A +  SN
Sbjct: 284 GFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGSN 331


>gi|5453726 leucine rich repeat (in FLII) interacting protein 2
           isoform 1 [Homo sapiens]
          Length = 721

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 11  DNIVTQFNAYEDFLDSQITTVDLYYLEDETLARQLVELGYRGTGERVKREDF-EARKAAI 69
           +N++ Q +  +D ++ Q   +  +Y E+E  +++L    +  +  + K E+  E  +   
Sbjct: 394 NNLIYQVDTLKDVIEEQEEQMAEFYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRD 453

Query: 70  EIARLAERAQQK--TLTSAGKDLQDNFL 95
           E+    +R QQK  T+T    DLQ+  L
Sbjct: 454 ELIEEKQRMQQKIDTMTKEVFDLQETLL 481


>gi|38348729 hypothetical protein LOC203238 [Homo sapiens]
          Length = 1326

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 6/45 (13%)

Query: 22  DFLDSQITTVDLYYLEDETLARQLVELGYRGTGERVKREDFEARK 66
           DFL  Q+ T +L+ LE  TLA+ L       T E  K+E+ + +K
Sbjct: 753 DFLQEQVNTFELFKLEIRTLAQAL------STVEEKKQEEAKMKK 791


>gi|183979982 chemokine (C-C motif) receptor 2 isoform B [Homo
           sapiens]
          Length = 360

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 115 FIRDRNSHGQEISGYIDYAHRLKTEDFEVYFTGKKRLLP 153
           FIR+ N  G+E++ + DY +      F+V   G + L P
Sbjct: 9   FIRNTNESGEEVTTFFDYDYGAPCHKFDVKQIGAQLLPP 47


>gi|183979980 chemokine (C-C motif) receptor 2 isoform A [Homo
           sapiens]
          Length = 374

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 115 FIRDRNSHGQEISGYIDYAHRLKTEDFEVYFTGKKRLLP 153
           FIR+ N  G+E++ + DY +      F+V   G + L P
Sbjct: 9   FIRNTNESGEEVTTFFDYDYGAPCHKFDVKQIGAQLLPP 47


>gi|148596944 C2 calcium-dependent domain containing 3 [Homo sapiens]
          Length = 1963

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 16/125 (12%)

Query: 33   LYYLEDETLARQLVELGYRGTGERVKREDFEARKAAIEIARLAERAQQKTLTSAGKDLQD 92
            L+Y  +E L  Q+       + ER  + D     A +++ARL ER+  +TLT +G     
Sbjct: 1482 LWYFREERLEIQVWRAYGNDSVERPHQTDSWIGSAYVDLARLGERS-ARTLTVSG----- 1535

Query: 93   NFLTALAMREEDNRSGKLSSVIFIRDRNSHGQEISGYIDYAHRLKTEDFEVYFTGKKRLL 152
              +  L  R   N SG    V  +         +S +++  H L + D   +   +   L
Sbjct: 1536 --VYPLFGRNASNLSGAALRVHVVL------SSLSSHLEPTHELDSMDCSSH--SESEQL 1585

Query: 153  PRPTD 157
            PR  D
Sbjct: 1586 PRRND 1590


>gi|17136078 VGF nerve growth factor inducible precursor [Homo
           sapiens]
          Length = 615

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 51  RGTGERVKREDFEARKAAIEIARLAERAQQKTLTSAGKD 89
           RG  ERV  ED EA +A  E A  AERA+Q  L  A ++
Sbjct: 372 RGGEERVGEEDEEAAEAEAE-AEEAERARQNALLFAEEE 409


>gi|21389613 tektin 4 [Homo sapiens]
          Length = 435

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 13/38 (34%), Positives = 24/38 (63%)

Query: 55 ERVKREDFEARKAAIEIARLAERAQQKTLTSAGKDLQD 92
          ++ +R+  E+++ A E   LA+R QQ +  + G+ LQD
Sbjct: 60 DQSERQRHESQQLATETQALAQRTQQDSTRTVGERLQD 97


>gi|108773808 hypothetical protein LOC51244 [Homo sapiens]
          Length = 467

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 7/69 (10%)

Query: 20  YEDFLDSQITTVDLYYL---EDETLARQLVE----LGYRGTGERVKREDFEARKAAIEIA 72
           YED  +++   + + Y     D+ L  + ++    L  + T +R KRE+ + ++ AI  A
Sbjct: 235 YEDIRENEARQLGVGYFAFARDKELRNKQMKTLEMLREQTTDQRTKRENIKEKRKAILEA 294

Query: 73  RLAERAQQK 81
           RLA+  Q+K
Sbjct: 295 RLAKLRQKK 303


>gi|226246537 zinc finger protein 407 isoform 3 [Homo sapiens]
          Length = 1660

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 57  VKREDFEARKAAIEIARLAERAQQKTLTSAGKDLQDNFLTALAMREEDNR-----SGKLS 111
           +  +D E  KA  +   +    Q KTL S+  DL    L    +  E+ +     SGK S
Sbjct: 625 LSEKDVEEHKATEK--HINSLVQPKTLQSSNSDLVLQTLPLSTLESENAKESMDDSGKAS 682

Query: 112 SVIFIRDRNSHGQEI 126
               ++ R SHG E+
Sbjct: 683 QEEPLKSRVSHGNEV 697


>gi|226246535 zinc finger protein 407 isoform 2 [Homo sapiens]
          Length = 1815

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 57  VKREDFEARKAAIEIARLAERAQQKTLTSAGKDLQDNFLTALAMREEDNR-----SGKLS 111
           +  +D E  KA  +   +    Q KTL S+  DL    L    +  E+ +     SGK S
Sbjct: 625 LSEKDVEEHKATEK--HINSLVQPKTLQSSNSDLVLQTLPLSTLESENAKESMDDSGKAS 682

Query: 112 SVIFIRDRNSHGQEI 126
               ++ R SHG E+
Sbjct: 683 QEEPLKSRVSHGNEV 697


>gi|74048554 cancer susceptibility candidate 5 isoform 2 [Homo
            sapiens]
          Length = 2316

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 56   RVKREDFEARKAAIEIARLAERAQQKTLTSAGKDL 90
            ++ RED EAR+  IE  +L+   Q K L    K+L
Sbjct: 1918 QIYREDCEARRQKIEELKLSASNQDKLLVDINKNL 1952


>gi|74048514 cancer susceptibility candidate 5 isoform 1 [Homo
            sapiens]
          Length = 2342

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 56   RVKREDFEARKAAIEIARLAERAQQKTLTSAGKDL 90
            ++ RED EAR+  IE  +L+   Q K L    K+L
Sbjct: 1944 QIYREDCEARRQKIEELKLSASNQDKLLVDINKNL 1978


>gi|134133288 zinc finger protein 407 isoform 1 [Homo sapiens]
          Length = 2248

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 57  VKREDFEARKAAIEIARLAERAQQKTLTSAGKDLQDNFLTALAMREEDNR-----SGKLS 111
           +  +D E  KA  +   +    Q KTL S+  DL    L    +  E+ +     SGK S
Sbjct: 625 LSEKDVEEHKATEK--HINSLVQPKTLQSSNSDLVLQTLPLSTLESENAKESMDDSGKAS 682

Query: 112 SVIFIRDRNSHGQEI 126
               ++ R SHG E+
Sbjct: 683 QEEPLKSRVSHGNEV 697


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.135    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,943,323
Number of Sequences: 37866
Number of extensions: 328468
Number of successful extensions: 825
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 818
Number of HSP's gapped (non-prelim): 18
length of query: 233
length of database: 18,247,518
effective HSP length: 99
effective length of query: 134
effective length of database: 14,498,784
effective search space: 1942837056
effective search space used: 1942837056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.