Guide to the Human Genome
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Name: C4orf22 Sequence: fasta or formatted (233aa) NCBI GI: 22749509
Description:

hypothetical protein LOC255119

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         18           2
 C cysteine            0.0          0           0
 D aspartate           9.0         21           1
 E glutamate           7.7         18           2
 F phenylalanine       4.3         10           1
 G glycine             4.7         11           1
 H histidine           1.3          3           1
 I isoleucine          7.3         17           1
 K lysine              5.6         13           2
 L leucine             9.4         22           2
 M methionine          0.9          2           1
 N asparagine          4.7         11           1
 P proline             2.6          6           1
 Q glutamine           4.7         11           2
 R arginine            8.6         20           2
 S serine              5.6         13           2
 T threonine           6.4         15           2
 V valine              4.3         10           1
 W tryptophan          0.4          1           1
 Y tyrosine            4.7         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC255119 
PPARGC1A              0.011   peroxisome proliferator-activated receptor gamma, coa...
NUDC                  0.011   nuclear distribution gene C homolog 
COX1                  0.011   cytochrome c oxidase subunit I 
COX1                  0.011   cytochrome c oxidase subunit I 
LRRFIP2               0.011   leucine rich repeat (in FLII) interacting protein 2 i...
C9orf93               0.009   hypothetical protein LOC203238 
CCR2                  0.009   chemokine (C-C motif) receptor 2 isoform B 
CCR2                  0.009   chemokine (C-C motif) receptor 2 isoform A 
C2CD3                 0.009   C2 calcium-dependent domain containing 3 
VGF                   0.007   VGF nerve growth factor inducible precursor 
TEKT4                 0.007   tektin 4 
C3orf19               0.007   hypothetical protein LOC51244 
ZNF407                0.007   zinc finger protein 407 isoform 3 
ZNF407                0.007   zinc finger protein 407 isoform 2 
CASC5                 0.007   cancer susceptibility candidate 5 isoform 2 
CASC5                 0.007   cancer susceptibility candidate 5 isoform 1 
ZNF407                0.007   zinc finger protein 407 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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