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Search of human proteins with 226491350
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|226491350 tubulin polymerization-promoting protein family
member 2 [Homo sapiens]
(170 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|226491350 tubulin polymerization-promoting protein family mem... 343 5e-95
gi|56676377 tubulin polymerization-promoting protein family memb... 224 4e-59
gi|56676375 tubulin polymerization-promoting protein family memb... 224 4e-59
gi|5902018 tubulin polymerization promoting protein [Homo sapiens] 210 4e-55
gi|29171734 eukaryotic translation initiation factor 2C, 2 [Homo... 30 1.3
gi|217416415 RAD51-like 3 isoform 1 [Homo sapiens] 28 2.9
gi|239757009 PREDICTED: ankyrin repeat domain 20 family, member ... 28 3.8
gi|239751523 PREDICTED: ankyrin repeat domain 20 family, member ... 28 3.8
gi|148886696 surfactant protein A2 [Homo sapiens] 28 5.0
gi|147903070 surfactant protein A1 [Homo sapiens] 28 5.0
gi|38888175 surfactant, pulmonary-associated protein A1B [Homo s... 28 5.0
gi|146149162 surfactant, pulmonary-associated protein A2 [Homo s... 28 5.0
gi|7661926 SERTA domain containing 2 [Homo sapiens] 28 5.0
gi|191251777 breast carcinoma amplified sequence 1 [Homo sapiens] 27 6.5
gi|6912352 eukaryotic translation initiation factor 2C, 1 [Homo ... 27 8.5
>gi|226491350 tubulin polymerization-promoting protein family member
2 [Homo sapiens]
Length = 170
Score = 343 bits (879), Expect = 5e-95
Identities = 170/170 (100%), Positives = 170/170 (100%)
Query: 1 MASEAEKTFHRFAAFGESSSSGTEMNNKNFSKLCKDCGIMDGKTVTSTDVDIVFSKVKAK 60
MASEAEKTFHRFAAFGESSSSGTEMNNKNFSKLCKDCGIMDGKTVTSTDVDIVFSKVKAK
Sbjct: 1 MASEAEKTFHRFAAFGESSSSGTEMNNKNFSKLCKDCGIMDGKTVTSTDVDIVFSKVKAK 60
Query: 61 NARTITFQQFKEAVKELGQKRFKGKSPDEVLENIYGLMEGKDPATTGATKATTVGAVDRL 120
NARTITFQQFKEAVKELGQKRFKGKSPDEVLENIYGLMEGKDPATTGATKATTVGAVDRL
Sbjct: 61 NARTITFQQFKEAVKELGQKRFKGKSPDEVLENIYGLMEGKDPATTGATKATTVGAVDRL 120
Query: 121 TDTSKYTGTHKERFDESGKGKGIAGREEMTDNTGYVSGYKGSGTYDKKTK 170
TDTSKYTGTHKERFDESGKGKGIAGREEMTDNTGYVSGYKGSGTYDKKTK
Sbjct: 121 TDTSKYTGTHKERFDESGKGKGIAGREEMTDNTGYVSGYKGSGTYDKKTK 170
>gi|56676377 tubulin polymerization-promoting protein family member
3 [Homo sapiens]
Length = 176
Score = 224 bits (570), Expect = 4e-59
Identities = 105/165 (63%), Positives = 133/165 (80%)
Query: 6 EKTFHRFAAFGESSSSGTEMNNKNFSKLCKDCGIMDGKTVTSTDVDIVFSKVKAKNARTI 65
E++F +FA G+ +SG EMN KN++KLCKDC + DGK+VT TDVDIVFSKVK K+AR I
Sbjct: 11 EESFRKFAIHGDPKASGQEMNGKNWAKLCKDCKVADGKSVTGTDVDIVFSKVKGKSARVI 70
Query: 66 TFQQFKEAVKELGQKRFKGKSPDEVLENIYGLMEGKDPATTGATKATTVGAVDRLTDTSK 125
+++FK+A++EL KRFKGKS +E + I L+ GK+PA G TKA T GAVDRLTDTS+
Sbjct: 71 NYEEFKKALEELATKRFKGKSKEEAFDAICQLVAGKEPANVGVTKAKTGGAVDRLTDTSR 130
Query: 126 YTGTHKERFDESGKGKGIAGREEMTDNTGYVSGYKGSGTYDKKTK 170
YTG+HKERFDESGKGKGIAGR+++ D++GYVS YK +GTYD K K
Sbjct: 131 YTGSHKERFDESGKGKGIAGRQDILDDSGYVSAYKNAGTYDAKVK 175
>gi|56676375 tubulin polymerization-promoting protein family member
3 [Homo sapiens]
Length = 176
Score = 224 bits (570), Expect = 4e-59
Identities = 105/165 (63%), Positives = 133/165 (80%)
Query: 6 EKTFHRFAAFGESSSSGTEMNNKNFSKLCKDCGIMDGKTVTSTDVDIVFSKVKAKNARTI 65
E++F +FA G+ +SG EMN KN++KLCKDC + DGK+VT TDVDIVFSKVK K+AR I
Sbjct: 11 EESFRKFAIHGDPKASGQEMNGKNWAKLCKDCKVADGKSVTGTDVDIVFSKVKGKSARVI 70
Query: 66 TFQQFKEAVKELGQKRFKGKSPDEVLENIYGLMEGKDPATTGATKATTVGAVDRLTDTSK 125
+++FK+A++EL KRFKGKS +E + I L+ GK+PA G TKA T GAVDRLTDTS+
Sbjct: 71 NYEEFKKALEELATKRFKGKSKEEAFDAICQLVAGKEPANVGVTKAKTGGAVDRLTDTSR 130
Query: 126 YTGTHKERFDESGKGKGIAGREEMTDNTGYVSGYKGSGTYDKKTK 170
YTG+HKERFDESGKGKGIAGR+++ D++GYVS YK +GTYD K K
Sbjct: 131 YTGSHKERFDESGKGKGIAGRQDILDDSGYVSAYKNAGTYDAKVK 175
>gi|5902018 tubulin polymerization promoting protein [Homo sapiens]
Length = 219
Score = 210 bits (535), Expect = 4e-55
Identities = 98/168 (58%), Positives = 131/168 (77%)
Query: 3 SEAEKTFHRFAAFGESSSSGTEMNNKNFSKLCKDCGIMDGKTVTSTDVDIVFSKVKAKNA 62
S E+ F RFA G++ ++G EM+ KN+SKLCKDC ++DG+ VT TDVDIVFSK+K K+
Sbjct: 49 SALEEAFRRFAVHGDARATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSC 108
Query: 63 RTITFQQFKEAVKELGQKRFKGKSPDEVLENIYGLMEGKDPATTGATKATTVGAVDRLTD 122
RTITF+QF+EA++EL +KRFK KS +E + ++ L+EGK P +G TKA + V RLTD
Sbjct: 109 RTITFEQFQEALEELAKKRFKDKSSEEAVREVHRLIEGKAPIISGVTKAISSPTVSRLTD 168
Query: 123 TSKYTGTHKERFDESGKGKGIAGREEMTDNTGYVSGYKGSGTYDKKTK 170
T+K+TG+HKERFD SGKGKG AGR ++ D +GYVSGYK +GTYD+K +
Sbjct: 169 TTKFTGSHKERFDPSGKGKGKAGRVDLVDESGYVSGYKHAGTYDQKVQ 216
>gi|29171734 eukaryotic translation initiation factor 2C, 2 [Homo
sapiens]
Length = 859
Score = 29.6 bits (65), Expect = 1.3
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 76 ELGQKRFKGKSPDEVLENIYG---LMEGKDPATTGATKATTVGAVDRLTDTSKYTGTHKE 132
++GQ++ P EV + G + + D T+ +AT A DR + SK +
Sbjct: 329 QVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASF 388
Query: 133 RFDESGKGKGIAGREEMTDNTGYV 156
D + GI ++EMTD TG V
Sbjct: 389 NTDPYVREFGIMVKDEMTDVTGRV 412
>gi|217416415 RAD51-like 3 isoform 1 [Homo sapiens]
Length = 328
Score = 28.5 bits (62), Expect = 2.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 105 TTGATKATTVGAVDRLTDTSKYTGTHKERFDESGKGK 141
T+ A +T +G++D+L D YTG E G GK
Sbjct: 77 TSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGK 113
>gi|239757009 PREDICTED: ankyrin repeat domain 20 family, member A5
[Homo sapiens]
Length = 823
Score = 28.1 bits (61), Expect = 3.8
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
Query: 43 KTVTSTDVDIVFSKVKAKNARTITFQQFKEAVKELGQKRFKG--KSPDEVLENIYGLMEG 100
K T + V V+ KN +T+ +Q E Q+R + K +V+E
Sbjct: 336 KPSTEMEDPAVKGAVQXKNVQTLRAEQALPVASEEEQQRRERSEKKQPQVIEGNNTYKSE 395
Query: 101 KDPATTGATKATTVGAVDRLTDTSKYTGTHKERFDESGK 139
K + +T A DRLT K T+ ++F + K
Sbjct: 396 KIQLSENICHSTFSAAADRLTQQRKIGKTYPQQFPKKLK 434
>gi|239751523 PREDICTED: ankyrin repeat domain 20 family, member A5
[Homo sapiens]
Length = 823
Score = 28.1 bits (61), Expect = 3.8
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
Query: 43 KTVTSTDVDIVFSKVKAKNARTITFQQFKEAVKELGQKRFKG--KSPDEVLENIYGLMEG 100
K T + V V+ KN +T+ +Q E Q+R + K +V+E
Sbjct: 336 KPSTEMEDPAVKGAVQXKNVQTLRAEQALPVASEEEQQRRERSEKKQPQVIEGNNTYKSE 395
Query: 101 KDPATTGATKATTVGAVDRLTDTSKYTGTHKERFDESGK 139
K + +T A DRLT K T+ ++F + K
Sbjct: 396 KIQLSENICHSTFSAAADRLTQQRKIGKTYPQQFPKKLK 434
>gi|148886696 surfactant protein A2 [Homo sapiens]
Length = 248
Score = 27.7 bits (60), Expect = 5.0
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 53 VFSKVKAKNARTITFQQFKEAVKELGQKRFKGKSPDEVLENIYGLMEGKDPATTGATKAT 112
V KV + N ++ITF +EA G + ++P+E + + A G T+
Sbjct: 134 VGEKVFSSNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKKYNTYAYVGLTEGP 193
Query: 113 TVGAVDRLTDTSKYTGTHKERFDESGKGK 141
+ G R +D + T+ R + +G+GK
Sbjct: 194 SPGDF-RYSDGTPVNYTNWYRGEPAGRGK 221
>gi|147903070 surfactant protein A1 [Homo sapiens]
Length = 245
Score = 27.7 bits (60), Expect = 5.0
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 53 VFSKVKAKNARTITFQQFKEAVKELGQKRFKGKSPDEVLENIYGLMEGKDPATTGATKAT 112
V KV + N ++ITF +EA G + ++P+E + + A G T+
Sbjct: 134 VGEKVFSSNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKKYNTYAYVGLTEGP 193
Query: 113 TVGAVDRLTDTSKYTGTHKERFDESGKGK 141
+ G R +D + T+ R + +G+GK
Sbjct: 194 SPGDF-RYSDGTPVNYTNWYRGEPAGRGK 221
>gi|38888175 surfactant, pulmonary-associated protein A1B [Homo
sapiens]
Length = 248
Score = 27.7 bits (60), Expect = 5.0
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 53 VFSKVKAKNARTITFQQFKEAVKELGQKRFKGKSPDEVLENIYGLMEGKDPATTGATKAT 112
V KV + N ++ITF +EA G + ++P+E + + A G T+
Sbjct: 134 VGEKVFSSNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKKYNTYAYVGLTEGP 193
Query: 113 TVGAVDRLTDTSKYTGTHKERFDESGKGK 141
+ G R +D + T+ R + +G+GK
Sbjct: 194 SPGDF-RYSDGTPVNYTNWYRGEPAGRGK 221
>gi|146149162 surfactant, pulmonary-associated protein A2 [Homo
sapiens]
Length = 248
Score = 27.7 bits (60), Expect = 5.0
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 53 VFSKVKAKNARTITFQQFKEAVKELGQKRFKGKSPDEVLENIYGLMEGKDPATTGATKAT 112
V KV + N ++ITF +EA G + ++P+E + + A G T+
Sbjct: 134 VGEKVFSSNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKKYNTYAYVGLTEGP 193
Query: 113 TVGAVDRLTDTSKYTGTHKERFDESGKGK 141
+ G R +D + T+ R + +G+GK
Sbjct: 194 SPGDF-RYSDGTPVNYTNWYRGEPAGRGK 221
>gi|7661926 SERTA domain containing 2 [Homo sapiens]
Length = 314
Score = 27.7 bits (60), Expect = 5.0
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 105 TTGATKATTVGAVDRLTDTSKYTGTHK------ERFDESGKGKGIAGREEMTDNTGYVS 157
T+ +T+A T A D + TS GT K R D+S + G E+T +TG+++
Sbjct: 182 TSTSTEAATA-ATDSVKGTSSEAGTQKLDGPQESRADDSKLMDSLPGNFEITTSTGFLT 239
>gi|191251777 breast carcinoma amplified sequence 1 [Homo sapiens]
Length = 584
Score = 27.3 bits (59), Expect = 6.5
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 101 KDPATTGATKATTVGAVDRLTDTSKYTGTHKERFDESGKGKGIAGREE 148
KDP TGA K+ T A D +D + +T + ++ KG +G +
Sbjct: 304 KDPEDTGAEKSPTTSA-DLKSDKANFTSQETQGAGKNSKGCNPSGHTQ 350
>gi|6912352 eukaryotic translation initiation factor 2C, 1 [Homo
sapiens]
Length = 857
Score = 26.9 bits (58), Expect = 8.5
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 76 ELGQKRFKGKSPDEVLENIYG---LMEGKDPATTGATKATTVGAVDRLTDTSKYTGTHKE 132
++GQ++ P EV + G + + D T+ KAT A DR + S+
Sbjct: 327 QVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASY 386
Query: 133 RFDESGKGKGIAGREEMTDNTGYV 156
D + GI +++MT+ TG V
Sbjct: 387 NLDPYIQEFGIKVKDDMTEVTGRV 410
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.127 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,903,108
Number of Sequences: 37866
Number of extensions: 240181
Number of successful extensions: 524
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 518
Number of HSP's gapped (non-prelim): 15
length of query: 170
length of database: 18,247,518
effective HSP length: 95
effective length of query: 75
effective length of database: 14,650,248
effective search space: 1098768600
effective search space used: 1098768600
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.