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Search of human proteins with 226371750
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific
[Homo sapiens]
(912 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific ... 1840 0.0
gi|190194365 PAP associated domain containing 1 [Homo sapiens] 162 1e-39
gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Ho... 114 3e-25
gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Ho... 114 3e-25
gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Ho... 114 3e-25
gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens] 108 3e-23
gi|167555099 PAP associated domain containing 4 [Homo sapiens] 72 2e-12
gi|167555097 PAP associated domain containing 4 [Homo sapiens] 72 2e-12
gi|167555095 PAP associated domain containing 4 [Homo sapiens] 72 2e-12
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 50 7e-06
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 50 7e-06
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 50 1e-05
gi|239742468 PREDICTED: double homeobox, 4-like [Homo sapiens] 49 3e-05
gi|194272172 double homeobox, 4 [Homo sapiens] 49 3e-05
gi|194272217 double homeobox, 4-like [Homo sapiens] 49 3e-05
gi|194272216 double homeobox, 4-like [Homo sapiens] 49 3e-05
gi|194272215 double homeobox, 4-like [Homo sapiens] 49 3e-05
gi|194272192 double homeobox, 4-like [Homo sapiens] 49 3e-05
gi|239744249 PREDICTED: similar to double homeobox, 4 [Homo sapi... 48 5e-05
gi|239744248 PREDICTED: similar to double homeobox, 4 [Homo sapi... 48 5e-05
gi|239744246 PREDICTED: hypothetical protein XP_002343082 [Homo ... 48 5e-05
gi|239744244 PREDICTED: similar to double homeobox, 4 [Homo sapi... 48 5e-05
gi|239744242 PREDICTED: similar to double homeobox, 4 [Homo sapi... 48 5e-05
gi|239744240 PREDICTED: similar to double homeobox, 4 [Homo sapi... 48 5e-05
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 47 1e-04
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 47 1e-04
gi|239742467 PREDICTED: double homeobox, 4-like [Homo sapiens] 46 2e-04
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 45 4e-04
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 44 9e-04
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 44 9e-04
>gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific
[Homo sapiens]
Length = 912
Score = 1840 bits (4765), Expect = 0.0
Identities = 912/912 (100%), Positives = 912/912 (100%)
Query: 1 MSLPIGSAEVASERVELWRSGFRWWQRCLCFCRYRRVAMAAVDSDVESLPRGGFRCCLCH 60
MSLPIGSAEVASERVELWRSGFRWWQRCLCFCRYRRVAMAAVDSDVESLPRGGFRCCLCH
Sbjct: 1 MSLPIGSAEVASERVELWRSGFRWWQRCLCFCRYRRVAMAAVDSDVESLPRGGFRCCLCH 60
Query: 61 VTTANRPSLDAHLGGRKHRHLVELRAARKAQGLRSVFVSGFPRDVDSAQLSEYFLAFGPV 120
VTTANRPSLDAHLGGRKHRHLVELRAARKAQGLRSVFVSGFPRDVDSAQLSEYFLAFGPV
Sbjct: 61 VTTANRPSLDAHLGGRKHRHLVELRAARKAQGLRSVFVSGFPRDVDSAQLSEYFLAFGPV 120
Query: 121 ASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQKEFQSPASKSPKGA 180
ASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQKEFQSPASKSPKGA
Sbjct: 121 ASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQKEFQSPASKSPKGA 180
Query: 181 APDSHQLAKALAEAADVGAQMIKLVGLRELSEAERQLRSLVVALMQEVFTEFFPGCVVHP 240
APDSHQLAKALAEAADVGAQMIKLVGLRELSEAERQLRSLVVALMQEVFTEFFPGCVVHP
Sbjct: 181 APDSHQLAKALAEAADVGAQMIKLVGLRELSEAERQLRSLVVALMQEVFTEFFPGCVVHP 240
Query: 241 FGSSINSFDVHGCDLDLFLDLGDLEEPQPVPKAPESPSLDSALASPLDPQALACTPASPP 300
FGSSINSFDVHGCDLDLFLDLGDLEEPQPVPKAPESPSLDSALASPLDPQALACTPASPP
Sbjct: 241 FGSSINSFDVHGCDLDLFLDLGDLEEPQPVPKAPESPSLDSALASPLDPQALACTPASPP 300
Query: 301 DSQPPASPQDSEALDFETPSSSLAPQTPDSALASETLASPQSLPPASPLLEDREEGDLGK 360
DSQPPASPQDSEALDFETPSSSLAPQTPDSALASETLASPQSLPPASPLLEDREEGDLGK
Sbjct: 301 DSQPPASPQDSEALDFETPSSSLAPQTPDSALASETLASPQSLPPASPLLEDREEGDLGK 360
Query: 361 ASELAETPKEEKAEGAAMLELVGSILRGCVPGVYRVQTVPSARRPVVKFCHRPSGLHGDV 420
ASELAETPKEEKAEGAAMLELVGSILRGCVPGVYRVQTVPSARRPVVKFCHRPSGLHGDV
Sbjct: 361 ASELAETPKEEKAEGAAMLELVGSILRGCVPGVYRVQTVPSARRPVVKFCHRPSGLHGDV 420
Query: 421 SLSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWAQGRGLSGSGPLLSNYALTLLVIYFL 480
SLSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWAQGRGLSGSGPLLSNYALTLLVIYFL
Sbjct: 421 SLSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWAQGRGLSGSGPLLSNYALTLLVIYFL 480
Query: 481 QTRDPPVLPTVSQLTQKAGEGEQVEVDGWDCSFPRDASRLEPSINVEPLSSLLAQFFSCV 540
QTRDPPVLPTVSQLTQKAGEGEQVEVDGWDCSFPRDASRLEPSINVEPLSSLLAQFFSCV
Sbjct: 481 QTRDPPVLPTVSQLTQKAGEGEQVEVDGWDCSFPRDASRLEPSINVEPLSSLLAQFFSCV 540
Query: 541 SCWDLRGSLLSLREGQALPVAGGLPSNLWEGLRLGPLNLQDPFDLSHNVAANVTSRVAGR 600
SCWDLRGSLLSLREGQALPVAGGLPSNLWEGLRLGPLNLQDPFDLSHNVAANVTSRVAGR
Sbjct: 541 SCWDLRGSLLSLREGQALPVAGGLPSNLWEGLRLGPLNLQDPFDLSHNVAANVTSRVAGR 600
Query: 601 LQNCCRAAANYCRSLQYQRRSSRGRDWGLLPLLQPSSPSSLLSATPIPLPLAPFTQLTAA 660
LQNCCRAAANYCRSLQYQRRSSRGRDWGLLPLLQPSSPSSLLSATPIPLPLAPFTQLTAA
Sbjct: 601 LQNCCRAAANYCRSLQYQRRSSRGRDWGLLPLLQPSSPSSLLSATPIPLPLAPFTQLTAA 660
Query: 661 LVQVFREALGCHIEQATKRTRSEGGGTGESSQGGTSKRLKVDGQKNCCEEGKEEQQGCAG 720
LVQVFREALGCHIEQATKRTRSEGGGTGESSQGGTSKRLKVDGQKNCCEEGKEEQQGCAG
Sbjct: 661 LVQVFREALGCHIEQATKRTRSEGGGTGESSQGGTSKRLKVDGQKNCCEEGKEEQQGCAG 720
Query: 721 DGGEDRVEEMVIEVGEMVQDWAMQSPGQPGDLPLTTGKHGAPGEEGQPSHAALAERGPKG 780
DGGEDRVEEMVIEVGEMVQDWAMQSPGQPGDLPLTTGKHGAPGEEGQPSHAALAERGPKG
Sbjct: 721 DGGEDRVEEMVIEVGEMVQDWAMQSPGQPGDLPLTTGKHGAPGEEGQPSHAALAERGPKG 780
Query: 781 HEAAQEWSQGEAGKGASLPSSASWRCALWHRVWQGRRRARRRLQQQTKEGAGGGAGTRAG 840
HEAAQEWSQGEAGKGASLPSSASWRCALWHRVWQGRRRARRRLQQQTKEGAGGGAGTRAG
Sbjct: 781 HEAAQEWSQGEAGKGASLPSSASWRCALWHRVWQGRRRARRRLQQQTKEGAGGGAGTRAG 840
Query: 841 WLATEAQVTQELKGLSGGEERPETEPLLSFVASVSPADRMLTVTPLQDPQGLFPDLHHFL 900
WLATEAQVTQELKGLSGGEERPETEPLLSFVASVSPADRMLTVTPLQDPQGLFPDLHHFL
Sbjct: 841 WLATEAQVTQELKGLSGGEERPETEPLLSFVASVSPADRMLTVTPLQDPQGLFPDLHHFL 900
Query: 901 QVFLPQAIRHLK 912
QVFLPQAIRHLK
Sbjct: 901 QVFLPQAIRHLK 912
>gi|190194365 PAP associated domain containing 1 [Homo sapiens]
Length = 582
Score = 162 bits (410), Expect = 1e-39
Identities = 95/272 (34%), Positives = 154/272 (56%), Gaps = 14/272 (5%)
Query: 371 EKAEGAAMLELVGSILRGCVPGVYRVQTVPSARRPVVKFCHRPSGLHGDVSLSNRLALHN 430
E+ +L ++G L PG VQ + +AR P+V+F H+ SG D++ +NR+AL +
Sbjct: 277 ERIATQKILSVLGECLDHFGPGCVGVQKILNARCPLVRFSHQASGFQCDLTTNNRIALTS 336
Query: 431 SRFLSLCSELDGRVRPLVYTLRCWAQGRGLSGS--GPLLSNYALTLLVIYFLQTRDPPVL 488
S L + LD RVR LV+++RCWA+ L+ S G ++N++LT++VI+FLQ R PP+L
Sbjct: 337 SELLYIYGALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPIL 396
Query: 489 PTVSQLTQKAGEGEQVEVDGWDCSFPRDASRLEPSINVEPLSSLLAQFFSCVSCWDLRGS 548
PT+ L A ++ ++G +C+F RD SR++PS N E L LL +FF + +
Sbjct: 397 PTLDSLKTLADAEDKCVIEGNNCTFVRDLSRIKPSQNTETLELLLKEFFEYFGNFAFDKN 456
Query: 549 LLSLREGQALPVAGGLPSNLWEGLRLGPLNLQDPFDLSHNVAANVTSRVAGRLQNCCRAA 608
+++R+G+ P + PL +Q+PF+ S N++ NV+ + + R +
Sbjct: 457 SINIRQGR----EQNKPDS-------SPLYIQNPFETSLNISKNVSQSQLQKFVDLARES 505
Query: 609 ANYCRSLQYQRRS-SRGRDWGLLPLLQPSSPS 639
A + R S S R WGL+ LL PS+P+
Sbjct: 506 AWILQQEDTDRPSISSNRPWGLVSLLLPSAPN 537
Score = 79.7 bits (195), Expect = 1e-14
Identities = 55/193 (28%), Positives = 94/193 (48%), Gaps = 9/193 (4%)
Query: 79 RHLVELRAARKAQGLRSVFVSGFPRDVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVE-- 136
R E++ R+ Q R+V + P + + +Y FGP+ + + G++A+VE
Sbjct: 61 RRFSEMQNERREQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFC 119
Query: 137 ----MGDVGAREAVLSQSQHSLGGHRLRVRPREQKEFQSPASK--SPKGAAPDSHQLAKA 190
+G + S + + R R + K S S+ S + QL +
Sbjct: 120 QKESIGSLQNGTHTPSTAMETAIPFRSRFFNLKLKNQTSERSRVRSSNQLPRSNKQLFEL 179
Query: 191 LAEAADVGAQMIKLVGLRELSEAERQLRSLVVALMQEVFTEFFPGCVVHPFGSSINSFDV 250
L A + Q+ L+ +L+E +LR L +L++++ +FP C+V PFGSS+N+F
Sbjct: 180 LCYAESIDDQLNTLLKEFQLTEENTKLRYLTCSLIEDMAAAYFPDCIVRPFGSSVNTFGK 239
Query: 251 HGCDLDLFLDLGD 263
GCDLD+FLDL +
Sbjct: 240 LGCDLDMFLDLDE 252
>gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Homo
sapiens]
Length = 1645
Score = 114 bits (286), Expect = 3e-25
Identities = 85/255 (33%), Positives = 137/255 (53%), Gaps = 26/255 (10%)
Query: 355 EGDLGKASELAETPKEEKAEGAAMLELVGSILRGCVPGVYRVQTVPSARRPVVKFCHRPS 414
+ DL L EK ++E + IL+ PG+ + + +A+ P+VKF HR S
Sbjct: 1007 DSDLDICMTLEGHENAEKLNCKEIIENLAKILKRH-PGLRNILPITTAKVPIVKFEHRRS 1065
Query: 415 GLHGDVSLSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWAQGRGL-SGSGPLLSNYALT 473
GL GD+SL N LA HN+R L+ + +D RV+ L YT++ +A+ + S LS+YA
Sbjct: 1066 GLEGDISLYNTLAQHNTRMLATYAAIDPRVQYLGYTMKVFAKRCDIGDASRGSLSSYAYI 1125
Query: 474 LLVIYFLQTRDPPVLPTVSQLTQKAGEGEQVE---VDGWDCSFPRDASRLE---PSI--N 525
L+V+YFLQ R PPV+P + Q+ +G+Q+ VDGW+ F L+ PS+ N
Sbjct: 1126 LMVLYFLQQRKPPVIPVL----QEIFDGKQIPQRMVDGWNAFFFDKTEELKKRLPSLGKN 1181
Query: 526 VEPLSSL---LAQFFSCVSCWDLRGSLLSLREGQALPVAGGLPSNLWEGLRLGPLNLQDP 582
E L L L +F++ +D + ++S+R+ + L W + ++DP
Sbjct: 1182 TESLGELWLGLLRFYT--EEFDFKEYVISIRQKKLLTTF----EKQWTSKCIA---IEDP 1232
Query: 583 FDLSHNVAANVTSRV 597
FDL+HN+ A V+ ++
Sbjct: 1233 FDLNHNLGAGVSRKM 1247
Score = 45.8 bits (107), Expect = 2e-04
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 402 ARRPVVKFCHRPSGLHGDVSLSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWAQGRGL- 460
A+ PVV R SGL VS N +A + L+ +++ PLV R WA+ +
Sbjct: 451 AKVPVVVCRDRKSGLLCRVSAGNDMACLTTDLLTALGKIEPVFIPLVLAFRYWAKLCYID 510
Query: 461 SGSGPLLSNYALTLLVIYFLQTRDPPVLP 489
S + + +Y L+V++FLQ R PP+LP
Sbjct: 511 SQTDGGIPSYCFALMVMFFLQQRKPPLLP 539
Score = 35.4 bits (80), Expect = 0.24
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 155 GGHRLRVRPREQKEFQSPASKSPKGAAPDSHQLAKALAEAADVGAQMIKLVGLRELSEAE 214
G H+ R +K +S + P A A + +I+L +++ +
Sbjct: 318 GAHKHIKEKRHKKNILEKQEESELRSLPPPSP-----AHLAALSVAVIELAKEHGITDDD 372
Query: 215 RQLRSLVVALMQEVFTEFFPGCVVHPFGSSINSFDVHGCDLDL 257
++R +V M +V T F P C + +GSS+ F + D+++
Sbjct: 373 LRVRQEIVEEMSKVITTFLPECSLRLYGSSLTRFALKSSDVNI 415
>gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Homo
sapiens]
Length = 1644
Score = 114 bits (286), Expect = 3e-25
Identities = 85/255 (33%), Positives = 137/255 (53%), Gaps = 26/255 (10%)
Query: 355 EGDLGKASELAETPKEEKAEGAAMLELVGSILRGCVPGVYRVQTVPSARRPVVKFCHRPS 414
+ DL L EK ++E + IL+ PG+ + + +A+ P+VKF HR S
Sbjct: 1007 DSDLDICMTLEGHENAEKLNCKEIIENLAKILKRH-PGLRNILPITTAKVPIVKFEHRRS 1065
Query: 415 GLHGDVSLSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWAQGRGL-SGSGPLLSNYALT 473
GL GD+SL N LA HN+R L+ + +D RV+ L YT++ +A+ + S LS+YA
Sbjct: 1066 GLEGDISLYNTLAQHNTRMLATYAAIDPRVQYLGYTMKVFAKRCDIGDASRGSLSSYAYI 1125
Query: 474 LLVIYFLQTRDPPVLPTVSQLTQKAGEGEQVE---VDGWDCSFPRDASRLE---PSI--N 525
L+V+YFLQ R PPV+P + Q+ +G+Q+ VDGW+ F L+ PS+ N
Sbjct: 1126 LMVLYFLQQRKPPVIPVL----QEIFDGKQIPQRMVDGWNAFFFDKTEELKKRLPSLGKN 1181
Query: 526 VEPLSSL---LAQFFSCVSCWDLRGSLLSLREGQALPVAGGLPSNLWEGLRLGPLNLQDP 582
E L L L +F++ +D + ++S+R+ + L W + ++DP
Sbjct: 1182 TESLGELWLGLLRFYT--EEFDFKEYVISIRQKKLLTTF----EKQWTSKCIA---IEDP 1232
Query: 583 FDLSHNVAANVTSRV 597
FDL+HN+ A V+ ++
Sbjct: 1233 FDLNHNLGAGVSRKM 1247
Score = 45.8 bits (107), Expect = 2e-04
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 402 ARRPVVKFCHRPSGLHGDVSLSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWAQGRGL- 460
A+ PVV R SGL VS N +A + L+ +++ PLV R WA+ +
Sbjct: 451 AKVPVVVCRDRKSGLLCRVSAGNDMACLTTDLLTALGKIEPVFIPLVLAFRYWAKLCYID 510
Query: 461 SGSGPLLSNYALTLLVIYFLQTRDPPVLP 489
S + + +Y L+V++FLQ R PP+LP
Sbjct: 511 SQTDGGIPSYCFALMVMFFLQQRKPPLLP 539
Score = 35.4 bits (80), Expect = 0.24
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 155 GGHRLRVRPREQKEFQSPASKSPKGAAPDSHQLAKALAEAADVGAQMIKLVGLRELSEAE 214
G H+ R +K +S + P A A + +I+L +++ +
Sbjct: 318 GAHKHIKEKRHKKNILEKQEESELRSLPPPSP-----AHLAALSVAVIELAKEHGITDDD 372
Query: 215 RQLRSLVVALMQEVFTEFFPGCVVHPFGSSINSFDVHGCDLDL 257
++R +V M +V T F P C + +GSS+ F + D+++
Sbjct: 373 LRVRQEIVEEMSKVITTFLPECSLRLYGSSLTRFALKSSDVNI 415
>gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Homo
sapiens]
Length = 1640
Score = 114 bits (286), Expect = 3e-25
Identities = 85/255 (33%), Positives = 137/255 (53%), Gaps = 26/255 (10%)
Query: 355 EGDLGKASELAETPKEEKAEGAAMLELVGSILRGCVPGVYRVQTVPSARRPVVKFCHRPS 414
+ DL L EK ++E + IL+ PG+ + + +A+ P+VKF HR S
Sbjct: 1007 DSDLDICMTLEGHENAEKLNCKEIIENLAKILKRH-PGLRNILPITTAKVPIVKFEHRRS 1065
Query: 415 GLHGDVSLSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWAQGRGL-SGSGPLLSNYALT 473
GL GD+SL N LA HN+R L+ + +D RV+ L YT++ +A+ + S LS+YA
Sbjct: 1066 GLEGDISLYNTLAQHNTRMLATYAAIDPRVQYLGYTMKVFAKRCDIGDASRGSLSSYAYI 1125
Query: 474 LLVIYFLQTRDPPVLPTVSQLTQKAGEGEQVE---VDGWDCSFPRDASRLE---PSI--N 525
L+V+YFLQ R PPV+P + Q+ +G+Q+ VDGW+ F L+ PS+ N
Sbjct: 1126 LMVLYFLQQRKPPVIPVL----QEIFDGKQIPQRMVDGWNAFFFDKTEELKKRLPSLGKN 1181
Query: 526 VEPLSSL---LAQFFSCVSCWDLRGSLLSLREGQALPVAGGLPSNLWEGLRLGPLNLQDP 582
E L L L +F++ +D + ++S+R+ + L W + ++DP
Sbjct: 1182 TESLGELWLGLLRFYT--EEFDFKEYVISIRQKKLLTTF----EKQWTSKCIA---IEDP 1232
Query: 583 FDLSHNVAANVTSRV 597
FDL+HN+ A V+ ++
Sbjct: 1233 FDLNHNLGAGVSRKM 1247
Score = 45.8 bits (107), Expect = 2e-04
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 402 ARRPVVKFCHRPSGLHGDVSLSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWAQGRGL- 460
A+ PVV R SGL VS N +A + L+ +++ PLV R WA+ +
Sbjct: 451 AKVPVVVCRDRKSGLLCRVSAGNDMACLTTDLLTALGKIEPVFIPLVLAFRYWAKLCYID 510
Query: 461 SGSGPLLSNYALTLLVIYFLQTRDPPVLP 489
S + + +Y L+V++FLQ R PP+LP
Sbjct: 511 SQTDGGIPSYCFALMVMFFLQQRKPPLLP 539
Score = 35.4 bits (80), Expect = 0.24
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 155 GGHRLRVRPREQKEFQSPASKSPKGAAPDSHQLAKALAEAADVGAQMIKLVGLRELSEAE 214
G H+ R +K +S + P A A + +I+L +++ +
Sbjct: 318 GAHKHIKEKRHKKNILEKQEESELRSLPPPSP-----AHLAALSVAVIELAKEHGITDDD 372
Query: 215 RQLRSLVVALMQEVFTEFFPGCVVHPFGSSINSFDVHGCDLDL 257
++R +V M +V T F P C + +GSS+ F + D+++
Sbjct: 373 LRVRQEIVEEMSKVITTFLPECSLRLYGSSLTRFALKSSDVNI 415
>gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens]
Length = 1495
Score = 108 bits (269), Expect = 3e-23
Identities = 79/241 (32%), Positives = 126/241 (52%), Gaps = 27/241 (11%)
Query: 371 EKAEGAAMLELVGSILRGCVP--GVYRVQTVPSARRPVVKFCHRPSGLHGDVSLSNRLAL 428
E AEG + + + R G+ + + +A+ P+VKF H SGL D+SL N LAL
Sbjct: 1069 ETAEGLDCVRTIEELARVLRKHSGLRNILPITTAKVPIVKFFHLRSGLEVDISLYNTLAL 1128
Query: 429 HNSRFLSLCSELDGRVRPLVYTLRCWAQ----GRGLSGSGPLLSNYALTLLVIYFLQTRD 484
HN+R LS S +D RV+ L YT++ + + G GS LS+YA TL+V+YFLQ R+
Sbjct: 1129 HNTRLLSAYSAIDPRVKYLCYTMKVFTKMCDIGDASRGS---LSSYAYTLMVLYFLQQRN 1185
Query: 485 PPVLPTVSQLTQKAGEGEQVEVDGWDCSFPRDASRL-----EPSINVEPLSSL---LAQF 536
PPV+P + ++ K + ++ VDGW+ F L E N E + L L +F
Sbjct: 1186 PPVIPVLQEI-YKGEKKPEIFVDGWNIYFFDQIDELPTYWSECGKNTESVGQLWLGLLRF 1244
Query: 537 FSCVSCWDLRGSLLSLREGQALPVAGGLPSNLWEGLRLGPLNLQDPFDLSHNVAANVTSR 596
++ +D + ++S+R L W + ++DPFDL+HN+ A ++ +
Sbjct: 1245 YT--EEFDFKEHVISIRRKSLLTTF----KKQWTSKY---IVIEDPFDLNHNLGAGLSRK 1295
Query: 597 V 597
+
Sbjct: 1296 M 1296
Score = 46.2 bits (108), Expect = 1e-04
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 402 ARRPVVKFCHRPSGLHGDVSLSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWAQ----G 457
AR PVV + SGL VS N A ++ L+ +L+ ++ PLV R WA+
Sbjct: 391 ARVPVVVCREKQSGLLCKVSAGNENACLTTKHLTALGKLEPKLVPLVIAFRYWAKLCSID 450
Query: 458 RGLSGSGPLLSNYALTLLVIYFLQTRDPPVLP 489
R G L Y L+ I+FLQ R P+LP
Sbjct: 451 RPEEGG---LPPYVFALMAIFFLQQRKEPLLP 479
Score = 30.8 bits (68), Expect = 6.0
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 214 ERQLRSLVVALMQEVFTEFFPGCVVHPFGSSINSFDVHGCDLDLFLDLGDLE 265
E Q R + ++ + FPG + FGSS N F DLD+ + + LE
Sbjct: 1018 EDQAREHIRQNLESFIRQDFPGTKLSLFGSSKNGFGFKQSDLDVCMTINGLE 1069
>gi|167555099 PAP associated domain containing 4 [Homo sapiens]
Length = 484
Score = 72.4 bits (176), Expect = 2e-12
Identities = 61/225 (27%), Positives = 111/225 (49%), Gaps = 15/225 (6%)
Query: 371 EKAEGAAMLELVGSILRGCVPGVYRVQTVPSARRPVVKFCHRPSGLHGDVSLSNRLALHN 430
+K E +L LV + G + A+ P+VKF + S + D++++N + + N
Sbjct: 231 QKTEARHILTLVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRN 290
Query: 431 SRFLSLCSELDGRVRPLVYTLRCWAQGRGLS-GSGPLLSNYALTLLVIYFLQTRDPPVLP 489
+ L + L+ RVRPLV ++ WA ++ S LS+Y+L L+V+++LQT P+LP
Sbjct: 291 TFLLRTYAYLENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILP 350
Query: 490 TVSQL-TQKAGEGEQVE-VDGWDCSFPRDASRLEPSINVEPLSSLLAQFFSCVSC-WDLR 546
++ ++ + Q+ V C+ P S+ N L LL F + +D
Sbjct: 351 SLQKIYPESFSPAIQLHLVHQAPCNVPPYLSK-----NESNLGDLLLGFLKYYATEFDWN 405
Query: 547 GSLLSLREGQALPVAGGLPSNLWEGLRLGPLNLQDPFDLSHNVAA 591
++S+RE +A+P G+ W R + +++PFD ++ A
Sbjct: 406 SQMISVREAKAIPRPDGIE---W---RNKYICVEEPFDGTNTARA 444
>gi|167555097 PAP associated domain containing 4 [Homo sapiens]
Length = 484
Score = 72.4 bits (176), Expect = 2e-12
Identities = 61/225 (27%), Positives = 111/225 (49%), Gaps = 15/225 (6%)
Query: 371 EKAEGAAMLELVGSILRGCVPGVYRVQTVPSARRPVVKFCHRPSGLHGDVSLSNRLALHN 430
+K E +L LV + G + A+ P+VKF + S + D++++N + + N
Sbjct: 231 QKTEARHILTLVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRN 290
Query: 431 SRFLSLCSELDGRVRPLVYTLRCWAQGRGLS-GSGPLLSNYALTLLVIYFLQTRDPPVLP 489
+ L + L+ RVRPLV ++ WA ++ S LS+Y+L L+V+++LQT P+LP
Sbjct: 291 TFLLRTYAYLENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILP 350
Query: 490 TVSQL-TQKAGEGEQVE-VDGWDCSFPRDASRLEPSINVEPLSSLLAQFFSCVSC-WDLR 546
++ ++ + Q+ V C+ P S+ N L LL F + +D
Sbjct: 351 SLQKIYPESFSPAIQLHLVHQAPCNVPPYLSK-----NESNLGDLLLGFLKYYATEFDWN 405
Query: 547 GSLLSLREGQALPVAGGLPSNLWEGLRLGPLNLQDPFDLSHNVAA 591
++S+RE +A+P G+ W R + +++PFD ++ A
Sbjct: 406 SQMISVREAKAIPRPDGIE---W---RNKYICVEEPFDGTNTARA 444
>gi|167555095 PAP associated domain containing 4 [Homo sapiens]
Length = 484
Score = 72.4 bits (176), Expect = 2e-12
Identities = 61/225 (27%), Positives = 111/225 (49%), Gaps = 15/225 (6%)
Query: 371 EKAEGAAMLELVGSILRGCVPGVYRVQTVPSARRPVVKFCHRPSGLHGDVSLSNRLALHN 430
+K E +L LV + G + A+ P+VKF + S + D++++N + + N
Sbjct: 231 QKTEARHILTLVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRN 290
Query: 431 SRFLSLCSELDGRVRPLVYTLRCWAQGRGLS-GSGPLLSNYALTLLVIYFLQTRDPPVLP 489
+ L + L+ RVRPLV ++ WA ++ S LS+Y+L L+V+++LQT P+LP
Sbjct: 291 TFLLRTYAYLENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILP 350
Query: 490 TVSQL-TQKAGEGEQVE-VDGWDCSFPRDASRLEPSINVEPLSSLLAQFFSCVSC-WDLR 546
++ ++ + Q+ V C+ P S+ N L LL F + +D
Sbjct: 351 SLQKIYPESFSPAIQLHLVHQAPCNVPPYLSK-----NESNLGDLLLGFLKYYATEFDWN 405
Query: 547 GSLLSLREGQALPVAGGLPSNLWEGLRLGPLNLQDPFDLSHNVAA 591
++S+RE +A+P G+ W R + +++PFD ++ A
Sbjct: 406 SQMISVREAKAIPRPDGIE---W---RNKYICVEEPFDGTNTARA 444
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 50.4 bits (119), Expect = 7e-06
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 17/136 (12%)
Query: 61 VTTANRPSLDAHLGGRKHR---HLVELRAARKAQG---------LRSVFVSGFPRDVDSA 108
VT A +DA + R H+ +VE + A + ++ +FV G D +
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 109 QLSEYFLAFGPVASVVMDKDKGV-----FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRP 163
L +YF +G + + + D+G FA V D + + ++ Q H++ GH VR
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
Query: 164 REQKEFQSPASKSPKG 179
K+ + AS S +G
Sbjct: 180 ALSKQEMASASSSQRG 195
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 50.4 bits (119), Expect = 7e-06
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 17/136 (12%)
Query: 61 VTTANRPSLDAHLGGRKHR---HLVELRAARKAQG---------LRSVFVSGFPRDVDSA 108
VT A +DA + R H+ +VE + A + ++ +FV G D +
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 109 QLSEYFLAFGPVASVVMDKDKGV-----FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRP 163
L +YF +G + + + D+G FA V D + + ++ Q H++ GH VR
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
Query: 164 REQKEFQSPASKSPKG 179
K+ + AS S +G
Sbjct: 180 ALSKQEMASASSSQRG 195
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 49.7 bits (117), Expect = 1e-05
Identities = 49/179 (27%), Positives = 66/179 (36%), Gaps = 24/179 (13%)
Query: 266 EPQPVPKAPESPSLDSALASPLDPQALACTPASPPDSQPPASPQDSEALDFET--PSSSL 323
EP P+ P +P D P A C PA+ + +P+D A F T P
Sbjct: 353 EPPSPPEGPPNPGPDGGKQDGEAPPAGPCAPATDKAEEVVCAPEDV-ASPFPTAIPEGDT 411
Query: 324 APQTPDSALASETLAS--------PQSLPPASPLLEDREEGDLGKASELAETPKEEKAEG 375
P D A SE ++ P+ P P+L D E+G G A E + E G
Sbjct: 412 TPPETDPAATSEAPSARDGPERSVPKEAEPTPPVLPDEEKGPPGPAPEPEREAETEPERG 471
Query: 376 AAM-LELVGSILRGCVPGVYRVQTVPSARRPVVKFC--HRPSGLHGDVSLSNRLALHNS 431
A E +G+ T P+ P K C HRP+ + S LA S
Sbjct: 472 AGTEPERIGT----------EPSTAPAPSPPAPKSCLKHRPAAASEGPAASPPLAAAES 520
Score = 33.5 bits (75), Expect = 0.93
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 15/108 (13%)
Query: 267 PQPVPKAPESPSLDSALASPLDPQALACTPASPPDSQPPASPQDSEALDFETPSSSLAPQ 326
P P P+ + + +P+ + P++ P PPA L ++S P
Sbjct: 454 PGPAPEPEREAETEPERGAGTEPERIGTEPSTAPAPSPPAP---KSCLKHRPAAASEGPA 510
Query: 327 TPDSALASETLASPQSLPPASPLLEDREEGDLGKASELAETPKEEKAE 374
AS LA+ +S PP P G L + E PK E+AE
Sbjct: 511 ------ASPPLAAAES-PPVEP-----GPGSLDAEAAAPERPKAERAE 546
>gi|239742468 PREDICTED: double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 48.5 bits (114), Expect = 3e-05
Identities = 36/101 (35%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 288 DPQALACTPASPPDSQPPASPQDSEALDFETPSSSLAPQTPDSALA-----SETLASPQS 342
+PQA A P P AS + + PS +L P SAL E LASP+
Sbjct: 385 EPQAGAAPPPQPAPPDASASARQGQMQGIPAPSQALQEPAPWSALPCGLLLDELLASPEF 444
Query: 343 LPPASPLLEDREEGDLGKASELA--ETPKEEKAEGAAMLEL 381
L A PLLE G+L + E A E P E+ A + EL
Sbjct: 445 LQQAQPLLETEAPGELEASEEAASLEAPLSEEEYRALLEEL 485
>gi|194272172 double homeobox, 4 [Homo sapiens]
Length = 485
Score = 48.5 bits (114), Expect = 3e-05
Identities = 36/101 (35%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 288 DPQALACTPASPPDSQPPASPQDSEALDFETPSSSLAPQTPDSALA-----SETLASPQS 342
+PQA A P P AS + + PS +L P SAL E LASP+
Sbjct: 385 EPQAGAAPPPQPAPPDASASARQGQMQGIPAPSQALQEPAPWSALPCGLLLDELLASPEF 444
Query: 343 LPPASPLLEDREEGDLGKASELA--ETPKEEKAEGAAMLEL 381
L A PLLE G+L + E A E P E+ A + EL
Sbjct: 445 LQQAQPLLETEAPGELEASEEAASLEAPLSEEEYRALLEEL 485
>gi|194272217 double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 48.5 bits (114), Expect = 3e-05
Identities = 36/101 (35%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 288 DPQALACTPASPPDSQPPASPQDSEALDFETPSSSLAPQTPDSALA-----SETLASPQS 342
+PQA A P P AS + + PS +L P SAL E LASP+
Sbjct: 385 EPQAGAAPPPQPAPPDASASARQGQMQGIPAPSQALQEPAPWSALPCGLLLDELLASPEF 444
Query: 343 LPPASPLLEDREEGDLGKASELA--ETPKEEKAEGAAMLEL 381
L A PLLE G+L + E A E P E+ A + EL
Sbjct: 445 LQQAQPLLETEAPGELEASEEAASLEAPLSEEEYRALLEEL 485
>gi|194272216 double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 48.5 bits (114), Expect = 3e-05
Identities = 36/101 (35%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 288 DPQALACTPASPPDSQPPASPQDSEALDFETPSSSLAPQTPDSALA-----SETLASPQS 342
+PQA A P P AS + + PS +L P SAL E LASP+
Sbjct: 385 EPQAGAAPPPQPAPPDASASARQGQMQGIPAPSQALQEPAPWSALPCGLLLDELLASPEF 444
Query: 343 LPPASPLLEDREEGDLGKASELA--ETPKEEKAEGAAMLEL 381
L A PLLE G+L + E A E P E+ A + EL
Sbjct: 445 LQQAQPLLETEAPGELEASEEAASLEAPLSEEEYRALLEEL 485
>gi|194272215 double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 48.5 bits (114), Expect = 3e-05
Identities = 36/101 (35%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 288 DPQALACTPASPPDSQPPASPQDSEALDFETPSSSLAPQTPDSALA-----SETLASPQS 342
+PQA A P P AS + + PS +L P SAL E LASP+
Sbjct: 385 EPQAGAAPPPQPAPPDASASARQGQMQGIPAPSQALQEPAPWSALPCGLLLDELLASPEF 444
Query: 343 LPPASPLLEDREEGDLGKASELA--ETPKEEKAEGAAMLEL 381
L A PLLE G+L + E A E P E+ A + EL
Sbjct: 445 LQQAQPLLETEAPGELEASEEAASLEAPLSEEEYRALLEEL 485
>gi|194272192 double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 48.5 bits (114), Expect = 3e-05
Identities = 36/101 (35%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 288 DPQALACTPASPPDSQPPASPQDSEALDFETPSSSLAPQTPDSALA-----SETLASPQS 342
+PQA A P P AS + + PS +L P SAL E LASP+
Sbjct: 385 EPQAGAAPPPQPAPPDASASARQGQMQGIPAPSQALQEPAPWSALPCGLLLDELLASPEF 444
Query: 343 LPPASPLLEDREEGDLGKASELA--ETPKEEKAEGAAMLEL 381
L A PLLE G+L + E A E P E+ A + EL
Sbjct: 445 LQQAQPLLETEAPGELEASEEAASLEAPLSEEEYRALLEEL 485
>gi|239744249 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 47.8 bits (112), Expect = 5e-05
Identities = 37/101 (36%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 288 DPQALACTPASPPDSQPPASPQDSEALDFETPSSSLAPQTPDSALA-----SETLASPQS 342
+PQA A P P + P AS + + PS +L P SAL E LASP+
Sbjct: 385 EPQAGAAPPPQP--APPDASARQGQMQGIPAPSQALQEPAPWSALPCGLLLDELLASPEF 442
Query: 343 LPPASPLLEDREEGDLGKASELA--ETPKEEKAEGAAMLEL 381
L A PLLE G+L + E A E P E+ A + EL
Sbjct: 443 LQQAQPLLETEAPGELEASEEAASLEAPLSEEEYRALLEEL 483
>gi|239744248 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 47.8 bits (112), Expect = 5e-05
Identities = 37/101 (36%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 288 DPQALACTPASPPDSQPPASPQDSEALDFETPSSSLAPQTPDSALA-----SETLASPQS 342
+PQA A P P + P AS + + PS +L P SAL E LASP+
Sbjct: 385 EPQAGAAPPPQP--APPDASARQGQMQGIPAPSQALQEPAPWSALPCGLLLDELLASPEF 442
Query: 343 LPPASPLLEDREEGDLGKASELA--ETPKEEKAEGAAMLEL 381
L A PLLE G+L + E A E P E+ A + EL
Sbjct: 443 LQQAQPLLETEAPGELEASEEAASLEAPLSEEEYRALLEEL 483
>gi|239744246 PREDICTED: hypothetical protein XP_002343082 [Homo
sapiens]
Length = 483
Score = 47.8 bits (112), Expect = 5e-05
Identities = 37/101 (36%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 288 DPQALACTPASPPDSQPPASPQDSEALDFETPSSSLAPQTPDSALA-----SETLASPQS 342
+PQA A P P + P AS + + PS +L P SAL E LASP+
Sbjct: 385 EPQAGAAPPPQP--APPDASARQGQMQGIPAPSQALQEPAPWSALPCGLLLDELLASPEF 442
Query: 343 LPPASPLLEDREEGDLGKASELA--ETPKEEKAEGAAMLEL 381
L A PLLE G+L + E A E P E+ A + EL
Sbjct: 443 LQQAQPLLETEAPGELEASEEAASLEAPLSEEEYRALLEEL 483
>gi|239744244 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 47.8 bits (112), Expect = 5e-05
Identities = 37/101 (36%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 288 DPQALACTPASPPDSQPPASPQDSEALDFETPSSSLAPQTPDSALA-----SETLASPQS 342
+PQA A P P + P AS + + PS +L P SAL E LASP+
Sbjct: 385 EPQAGAAPPPQP--APPDASARQGQMQGIPAPSQALQEPAPWSALPCGLLLDELLASPEF 442
Query: 343 LPPASPLLEDREEGDLGKASELA--ETPKEEKAEGAAMLEL 381
L A PLLE G+L + E A E P E+ A + EL
Sbjct: 443 LQQAQPLLETEAPGELEASEEAASLEAPLSEEEYRALLEEL 483
>gi|239744242 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 47.8 bits (112), Expect = 5e-05
Identities = 37/101 (36%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 288 DPQALACTPASPPDSQPPASPQDSEALDFETPSSSLAPQTPDSALA-----SETLASPQS 342
+PQA A P P + P AS + + PS +L P SAL E LASP+
Sbjct: 385 EPQAGAAPPPQP--APPDASARQGQMQGIPAPSQALQEPAPWSALPCGLLLDELLASPEF 442
Query: 343 LPPASPLLEDREEGDLGKASELA--ETPKEEKAEGAAMLEL 381
L A PLLE G+L + E A E P E+ A + EL
Sbjct: 443 LQQAQPLLETEAPGELEASEEAASLEAPLSEEEYRALLEEL 483
>gi|239744240 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 47.8 bits (112), Expect = 5e-05
Identities = 37/101 (36%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 288 DPQALACTPASPPDSQPPASPQDSEALDFETPSSSLAPQTPDSALA-----SETLASPQS 342
+PQA A P P + P AS + + PS +L P SAL E LASP+
Sbjct: 385 EPQAGAAPPPQP--APPDASARQGQMQGIPAPSQALQEPAPWSALPCGLLLDELLASPEF 442
Query: 343 LPPASPLLEDREEGDLGKASELA--ETPKEEKAEGAAMLEL 381
L A PLLE G+L + E A E P E+ A + EL
Sbjct: 443 LQQAQPLLETEAPGELEASEEAASLEAPLSEEEYRALLEEL 483
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 46.6 bits (109), Expect = 1e-04
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 93 LRSVFVSGFPRDVDSAQLSEYFLAFGPVASVVMDKDKGV-----FAIVEMGDVGAREAVL 147
++ +FV G D + L +YF +G + + + D+G FA V D + + ++
Sbjct: 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Query: 148 SQSQHSLGGHRLRVRPREQKEFQSPASKSPKG 179
Q H++ GH VR K+ + AS S +G
Sbjct: 164 IQKYHTVKGHNCEVRKALPKQEMASASSSQRG 195
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 46.6 bits (109), Expect = 1e-04
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 93 LRSVFVSGFPRDVDSAQLSEYFLAFGPVASVVMDKDKGV-----FAIVEMGDVGAREAVL 147
++ +FV G D + L +YF +G + + + D+G FA V D + + ++
Sbjct: 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Query: 148 SQSQHSLGGHRLRVRPREQKEFQSPASKSPKG 179
Q H++ GH VR K+ + AS S +G
Sbjct: 164 IQKYHTVKGHNCEVRKALPKQEMASASSSQRG 195
>gi|239742467 PREDICTED: double homeobox, 4-like [Homo sapiens]
Length = 483
Score = 45.8 bits (107), Expect = 2e-04
Identities = 36/101 (35%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 288 DPQALACTPASPPDSQPPASPQDSEALDFETPSSSLAPQTPDSALA-----SETLASPQS 342
+PQA P P + P AS + + PS +L P SAL E LASP+
Sbjct: 385 EPQAGEAPPPQP--APPDASARQGQMQGIPAPSQALQEPAPWSALPCGLLLDELLASPEF 442
Query: 343 LPPASPLLEDREEGDLGKASELA--ETPKEEKAEGAAMLEL 381
L A PLLE G+L + E A E P E+ A + EL
Sbjct: 443 LQQAQPLLETEAPGELEASEEAASLEAPLSEEEYRALLEEL 483
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 44.7 bits (104), Expect = 4e-04
Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 269 PVPKAPESPSLDS----ALASPLDPQALACTPASPPDSQPPASPQDSEALDFETPSSS-L 323
P+ ++P SP +S AL +PL P A +P SPP + P SP E P +S L
Sbjct: 514 PLEESPLSPPEESPPSPALETPLSPPPEA-SPLSPPFEESPLSPPPEELPTSPPPEASRL 572
Query: 324 APQTPDSALASETLASPQSLPP-ASPLLEDREEGDLGKASELAETPKEEKAEGAAM 378
+P +S ++ SP S PP AS L EE L E E+P E + +
Sbjct: 573 SPPPEESPMSPPPEESPMSPPPEASRLFPPFEESPLSPPPE--ESPLSPPPEASRL 626
Score = 40.8 bits (94), Expect = 0.006
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 269 PVPKAPESPSLDSAL-----ASPLDPQALACTPASPPDSQPPASPQDSEALDFETPSSSL 323
P ++P SP+L++ L ASPL P + PP+ P + P ++ L S +
Sbjct: 522 PPEESPPSPALETPLSPPPEASPLSPPFEESPLSPPPEELPTSPPPEASRLSPPPEESPM 581
Query: 324 APQTPDSALASETLASPQSLPP--ASPLLEDREEGDLG---KASELAETPKE 370
+P +S ++ AS + PP SPL EE L +AS L+ P++
Sbjct: 582 SPPPEESPMSPPPEAS-RLFPPFEESPLSPPPEESPLSPPPEASRLSPPPED 632
Score = 38.5 bits (88), Expect = 0.029
Identities = 32/93 (34%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 267 PQPVPKAPESPSLDSALASPLDPQALACTPASPPDSQPPASPQDSEALDFETPSSSLAPQ 326
P+ P+SP L P QALA +P S PD P S D A TP P
Sbjct: 2333 PRASQVEPQSPGLGLRPQEPPPAQALAPSPPSHPDIFRPGSYTDPYAQPPLTPRPQPPPP 2392
Query: 327 TPDSALASETLAS-PQSLPPASPLLEDREEGDL 358
AL +L S P S PASP + + L
Sbjct: 2393 ESCCALPPRSLPSDPFSRVPASPQSQSSSQSPL 2425
Score = 38.1 bits (87), Expect = 0.038
Identities = 38/122 (31%), Positives = 52/122 (42%), Gaps = 20/122 (16%)
Query: 267 PQPVPKAPESPSLDSALASPLDPQALACTPA----SPPDSQPPASPQDSEALDFETPSSS 322
P+ P +P P +S ++ P + L+ P SPP + P SP E+ P +S
Sbjct: 630 PEDSPMSP--PPEESPMSPPPEVSRLSPLPVVSRLSPPPEESPLSPPPEESPTSPPPEAS 687
Query: 323 -LAPQTPDSALASETLASPQSLPP----------ASPLLEDREEGDLGKASE---LAETP 368
L+P DS + SP S PP SPLL EE L SE L+ P
Sbjct: 688 RLSPPPEDSPTSPPPEDSPASPPPEDSLMSLPLEESPLLPLPEEPQLCPRSEGPHLSPRP 747
Query: 369 KE 370
+E
Sbjct: 748 EE 749
Score = 36.2 bits (82), Expect = 0.14
Identities = 43/145 (29%), Positives = 55/145 (37%), Gaps = 15/145 (10%)
Query: 236 CVVHPFGSSINSFDVHGCDLDLFLDLGDLEEPQPVPKAPESPSLDSALASPLDPQALACT 295
C P G + G L+ L+ EE +P ESP SP P A
Sbjct: 414 CEAKPLGKA-------GVQLEPQLEAPLNEEMPLLPPPEESPLSPPPEESPTSPPPEASR 466
Query: 296 PASPPDSQPPASPQDSEALDFETP--SSSLAPQTPDSALASETLASPQSLPPASPLLEDR 353
+ PP+ PASP EAL P S L+P +S L+ +SP S SPL
Sbjct: 467 LSPPPEEL-PASPL-PEALHLSRPLEESPLSPPPEESPLSPPPESSPFSPLEESPLSPPE 524
Query: 354 EEGDLGKASELAETPKEEKAEGAAM 378
E S ETP E + +
Sbjct: 525 E----SPPSPALETPLSPPPEASPL 545
Score = 35.8 bits (81), Expect = 0.19
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 13/121 (10%)
Query: 264 LEEP-QPVPKA-PESPSLDSALASPLDPQALACTP-------ASPPDSQPPASPQDSEAL 314
LE P P P+A P SP + + SP P+ L +P + PP+ P + P + +
Sbjct: 532 LETPLSPPPEASPLSPPFEESPLSP-PPEELPTSPPPEASRLSPPPEESPMSPPPEESPM 590
Query: 315 DFETPSSSLAPQTPDSALASETLASPQSLPP-ASPLLEDREEGDLGKASELAETPKEEKA 373
+S L P +S L+ SP S PP AS L E+ + E E+P
Sbjct: 591 SPPPEASRLFPPFEESPLSPPPEESPLSPPPEASRLSPPPEDSPMSPPPE--ESPMSPPP 648
Query: 374 E 374
E
Sbjct: 649 E 649
Score = 35.8 bits (81), Expect = 0.19
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 271 PKAPESPSLDSALASPLDPQALACTPASPPDSQPPASPQDSEALDFETPSSSLAPQTPDS 330
P ESP SPL P A + PP+ P + P + + S L+P S
Sbjct: 601 PPFEESPLSPPPEESPLSPPPEASRLSPPPEDSPMSPPPEESPMSPPPEVSRLSPLPVVS 660
Query: 331 ALASETLASPQSLPPASPLLEDREEGDLGKASELAETPKE 370
L+ SP S PP E+ +AS L+ P++
Sbjct: 661 RLSPPPEESPLSPPP-----EESPTSPPPEASRLSPPPED 695
Score = 35.0 bits (79), Expect = 0.32
Identities = 35/110 (31%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 266 EPQPVPKAPESPSLDSALA-SPLDPQALACTPASPPDSQPPASPQDSEALDFETPSSSLA 324
E P PE+ L L SPL P + PP+S P + ++S E S A
Sbjct: 472 EELPASPLPEALHLSRPLEESPLSPPPEESPLSPPPESSPFSPLEESPLSPPEESPPSPA 531
Query: 325 PQTPDSALASETLASPQSLP----PASPLLEDREEGDLGKASELAETPKE 370
+TP L+ ASP S P P SP E+ +AS L+ P+E
Sbjct: 532 LETP---LSPPPEASPLSPPFEESPLSPPPEELPTSPPPEASRLSPPPEE 578
Score = 35.0 bits (79), Expect = 0.32
Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 5/100 (5%)
Query: 271 PKAPESPSLDSALASPLDPQALACTPASPPDSQPPASPQDSEALDFETPSSSLAPQTPDS 330
P ESP SP+ P A P + P + P + L +S L+P DS
Sbjct: 574 PPPEESPMSPPPEESPMSPPPEASRLFPPFEESPLSPPPEESPLSPPPEASRLSPPPEDS 633
Query: 331 ALASETLASPQSLPPASPLLEDREEGDLGKASELAETPKE 370
++ SP S PP E L S L+ P+E
Sbjct: 634 PMSPPPEESPMSPPP-----EVSRLSPLPVVSRLSPPPEE 668
Score = 35.0 bits (79), Expect = 0.32
Identities = 27/91 (29%), Positives = 35/91 (38%)
Query: 265 EEPQPVPKAPESPSLDSALASPLDPQALACTPASPPDSQPPASPQDSEALDFETPSSSLA 324
EE P ESP AS L P + PP+ P + P + L S L+
Sbjct: 604 EESPLSPPPEESPLSPPPEASRLSPPPEDSPMSPPPEESPMSPPPEVSRLSPLPVVSRLS 663
Query: 325 PQTPDSALASETLASPQSLPPASPLLEDREE 355
P +S L+ SP S PP + L E
Sbjct: 664 PPPEESPLSPPPEESPTSPPPEASRLSPPPE 694
Score = 35.0 bits (79), Expect = 0.32
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 274 PESPSLDSALASPLDPQA--LACTPASPPDSQPPASP--QDSEALD-FETPSSSLAPQTP 328
PE P+L+ + SPL L+C SP + S +D+ LD + P S P
Sbjct: 1081 PECPALEPSATSPLPSPMGDLSCPAPSPAPALDDFSGLGEDTAPLDGIDAPGSQPEPGQT 1140
Query: 329 DSALASE-----TLASPQSLPPASPL---LEDREEGDLGKASELAETPK 369
+LASE L P+ L P +P+ E ++ G E E P+
Sbjct: 1141 PGSLASELKGSPVLLDPEELAPVTPMEVYPECKQTAGQGSPCEEQEEPR 1189
Score = 35.0 bits (79), Expect = 0.32
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 269 PVPKAPESPSLDSALASPLDPQALAC-----TPASP------PDSQPPASPQDSEALDFE 317
P + P SP S+ SPL P+ L+ +P +P P S+PP+ PQ + F
Sbjct: 2407 PFSRVPASPQSQSSSQSPLTPRPLSAEAFCPSPVTPRFQSPDPYSRPPSRPQSRD--PFA 2464
Query: 318 TPSSSLAPQTPDSALASETLA 338
PQ P+ A + +LA
Sbjct: 2465 PLHKPPRPQPPEVAFKAGSLA 2485
Score = 34.7 bits (78), Expect = 0.42
Identities = 30/110 (27%), Positives = 41/110 (37%), Gaps = 4/110 (3%)
Query: 265 EEPQPVPKAPESPSLDSALASPLDPQALACTPASPPDSQPPASPQDSEALDFETPSSSLA 324
EE P ESP+ AS L P + PP+ P + P + + S L
Sbjct: 667 EESPLSPPPEESPTSPPPEASRLSPPPEDSPTSPPPEDSPASPPPEDSLMSLPLEESPLL 726
Query: 325 PQTPDSALASETLASPQSLPPASPLLEDR-EEGDLGKASE---LAETPKE 370
P + L + S P P L R EE L +E L+ P+E
Sbjct: 727 PLPEEPQLCPRSEGPHLSPRPEEPHLSPRPEEPHLSPQAEEPHLSPQPEE 776
Score = 34.7 bits (78), Expect = 0.42
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 264 LEEP--QPVPKAPESPSLDSALASPLDPQALACTPASPPDSQ---PPASPQDSEALDFET 318
L EP P+ PE L + L PQ + P PP S A P S + E
Sbjct: 900 LSEPGEPPLSPLPEELPLSPSGEPSLSPQLMPPDPLPPPLSPIITAAAPPALSPLGELEY 959
Query: 319 PSSSLAPQTPDSALASETLASPQSLPP 345
P + P+S LA+ L +P S PP
Sbjct: 960 PFGAKGDSDPESPLAAPILETPISPPP 986
Score = 30.4 bits (67), Expect = 7.8
Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 11/112 (9%)
Query: 264 LEEPQPVPKAPESPSLDS------ALASPLDPQALACT----PASPPDSQPPASPQDSEA 313
L+ P P P P ++S L P T P+ P S +S
Sbjct: 2547 LKPPVPQPGLPPPHGINSHFGPGPTLGKPQSTNYTVATGNFHPSGSPLGPSSGSTGESYG 2606
Query: 314 LDFETPSSSLAPQTPDSALASETLASPQSLPPASPLLEDREEGDLGKASELA 365
L P S L P PD +L + + Q SP +E RE+ G S LA
Sbjct: 2607 LSPLRPPSVLPPPAPDGSLPYLSHGASQRSGITSP-VEKREDPGTGMGSSLA 2657
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 43.5 bits (101), Expect = 9e-04
Identities = 36/86 (41%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 268 QPVPKAPESPSLDS-ALASPLDPQALAC----TPASPPDSQPPASPQDSEALDFETPSSS 322
Q P P SP L A SP P ALA P SPP S P +P A +PS++
Sbjct: 631 QAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSAT 690
Query: 323 LAPQTPDSALASETLASPQSLPPASP 348
Q P S LA+ L P S PPASP
Sbjct: 691 PPSQAPPS-LAAPPLQVPPS-PPASP 714
Score = 42.0 bits (97), Expect = 0.003
Identities = 32/87 (36%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 267 PQPVPKAPESPSLDSALASPLDPQALACTPASP----PDSQPPASPQDSEALDFETPSSS 322
P P A SP L + PL P A A P P Q P SP S L +P ++
Sbjct: 591 PPQAPPALASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPPASPPL---SPLAT 647
Query: 323 LAPQTPDSALASETLASPQSLPPASPL 349
+PQ P +ALA L +P S PP+ P+
Sbjct: 648 PSPQAP-NALAVHLLQAPFSPPPSPPV 673
Score = 38.1 bits (87), Expect = 0.038
Identities = 32/93 (34%), Positives = 40/93 (43%), Gaps = 18/93 (19%)
Query: 269 PVPKAPESPSLDSALASPLDPQALACTPASPPDSQPP--------ASPQDSEALDFETPS 320
P+P AP SPS +L Q L PA+PP PP A P + P
Sbjct: 340 PLPLAPPSPSAPPSL------QTLPSPPATPPSQAPPSMTTPPMQAPPSLQTIPPIQVPH 393
Query: 321 SSLAP--QTPDSALASETLASPQSLPPASPLLE 351
S +P Q P S LA +L + SL SP L+
Sbjct: 394 SLTSPSLQAPPSPLALSSLQATTSL--GSPTLQ 424
Score = 37.4 bits (85), Expect = 0.064
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 264 LEEPQPVPKAPES-PSLDSALASPL---DPQALACTPASPPDSQP---PASPQDSEALDF 316
L PQ P ++ P+L +SPL P P PPD+ PA+ S L
Sbjct: 280 LRPPQVTPPRKDAAPALGPLSSSPLATPSPSGTKARPVPPPDNAATPLPATLPPSPPLAT 339
Query: 317 ETPSSSLAPQTPDSALASETLASPQSLPPA 346
P LAP +P + + +TL SP + PP+
Sbjct: 340 PLP---LAPPSPSAPPSLQTLPSPPATPPS 366
Score = 36.6 bits (83), Expect = 0.11
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 267 PQPVPKAPESPSLDSALASPLDPQALACTPASPPDSQPPASPQDSEALDFETPSSSLAPQ 326
P P +AP SP ++ P + A + P Q P SP S + +PS++ PQ
Sbjct: 669 PSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPM---SPSATPPPQ 725
Query: 327 TPDSALASETLASPQSLPPASPL 349
P LA+ L P S P + P+
Sbjct: 726 APPP-LAAPPLQVPPSPPASPPM 747
Score = 36.6 bits (83), Expect = 0.11
Identities = 35/84 (41%), Positives = 44/84 (52%), Gaps = 13/84 (15%)
Query: 268 QPVPKAPESPSLDSALASPLDPQALACTPASPPDSQPPASPQDSEALDFETPSSSLAPQT 327
+P P+AP ALA+P QAL PAS P Q P SP S + +P ++ PQ
Sbjct: 783 KPPPQAP------PALATP-PLQALPSPPASFP-GQAPFSPSASLPM---SPLATPPPQA 831
Query: 328 PDSALASETLASPQSLPPASPLLE 351
P LA+ L P S PPASP L+
Sbjct: 832 P-PVLAAPLLQVPPS-PPASPTLQ 853
Score = 35.8 bits (81), Expect = 0.19
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 271 PKAPESPSLDSALASPLDPQALACTPASPP--DSQPPASPQDSEALDFETPSSSLAPQTP 328
P+AP PS P QAL +PP D+ P P S L +PS + A P
Sbjct: 263 PRAPAHPSQPK----PKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSGTKARPVP 318
Query: 329 DSALASETLASPQSLPPASPL 349
A+ L P +LPP+ PL
Sbjct: 319 PPDNAATPL--PATLPPSPPL 337
Score = 35.0 bits (79), Expect = 0.32
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 268 QPVPKAPESPSLDSALASPLDPQALACTPASPPDSQPPASPQDSEALDFETPSSSLAPQT 327
+P P+SP L + L+ P P T SP S P +SP L + +S +PQ
Sbjct: 446 RPASTPPDSPPLQAPLSLPASPPLQ--TSLSPAVS-PLSSPLTIHPLQALSSLASHSPQA 502
Query: 328 PDSALASETLASPQSLPPAS 347
P S+L L + SL P S
Sbjct: 503 PLSSLIMPPLETQSSLAPPS 522
Score = 34.3 bits (77), Expect = 0.54
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 269 PVPKA-PESPSLDSALASPLDPQALACTPASPPDSQPPASPQDSEALDFETPSSSLAP-- 325
P+P P SP L + L PL P + + P+ PPA+P TP P
Sbjct: 326 PLPATLPPSPPLATPL--PLAPPSPSAPPSLQTLPSPPATPPSQAPPSMTTPPMQAPPSL 383
Query: 326 QTPDSALASETLASPQSLPPASPL 349
QT +L SP P SPL
Sbjct: 384 QTIPPIQVPHSLTSPSLQAPPSPL 407
Score = 33.5 bits (75), Expect = 0.93
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 269 PVPKAPESPSLDSALASPLDPQALACTPASPPDSQPPASPQDSEALDFETPSSSL---AP 325
P P+ P + P P +L +P + P Q P + +P +S AP
Sbjct: 753 PPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAP 812
Query: 326 QTPDSALASETLASPQSLPP---ASPLLE 351
+P ++L LA+P P A+PLL+
Sbjct: 813 FSPSASLPMSPLATPPPQAPPVLAAPLLQ 841
Score = 32.7 bits (73), Expect = 1.6
Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 26/106 (24%)
Query: 269 PVPKAPES-----PSLDSALASPLDPQALACTPASPPDSQPPASPQDSEALDFETPSSSL 323
P P+ P S P ALASP Q L P SP + PP +P P +L
Sbjct: 579 PPPETPSSIATPPPQAPPALASP-PLQGLPSPPLSPLATPPPQAP----------PXLAL 627
Query: 324 AP-QTPDSALASETLASPQSLPPASPLLEDREEGDLGKASELAETP 368
P Q P S P + PP SPL + A L + P
Sbjct: 628 PPLQAPPS---------PPASPPLSPLATPSPQAPNALAVHLLQAP 664
Score = 32.3 bits (72), Expect = 2.1
Identities = 29/88 (32%), Positives = 32/88 (36%), Gaps = 10/88 (11%)
Query: 268 QPVPKAPESPSLD-SALASPLDPQALACTP--------ASPPDSQPPASPQDSEALDFET 318
Q P P SP + SA P P LA P ASPP S P A+P
Sbjct: 705 QVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMS-PSATPPPRVPPLLAA 763
Query: 319 PSSSLAPQTPDSALASETLASPQSLPPA 346
P + P P S S P PPA
Sbjct: 764 PPLQVPPSPPASLPMSPLAKPPPQAPPA 791
Score = 30.4 bits (67), Expect = 7.8
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 268 QPVPKAPESPSLDSALASPLDPQALACTPASPPDSQPPASPQDSEALDFETPSSSLAPQT 327
Q P + +P L++ + P A P + P + P P +P ++ P+T
Sbjct: 524 QTPPASLTTPPLENLPSLAPPPLQTASAPLTTPHLETPPCPAPCPLQAPPSPLTTPPPET 583
Query: 328 PDSAL-----ASETLASP--QSL--PPASPL 349
P S A LASP Q L PP SPL
Sbjct: 584 PSSIATPPPQAPPALASPPLQGLPSPPLSPL 614
Score = 30.4 bits (67), Expect = 7.8
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 17/95 (17%)
Query: 271 PKAPESPSLDSALASPLDPQALACTPASPPDSQP----------------PASPQDSEAL 314
P+ P +P D++++ P ALA P PP P ++P++
Sbjct: 855 PRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGY 914
Query: 315 DFETPSSSLAPQTPDSALASETLASPQSLPPASPL 349
D + A PD+ LA+ A+ S PA PL
Sbjct: 915 DSGPEGGAAASPPPDAELAACHPAA-WSRGPAPPL 948
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 43.5 bits (101), Expect = 9e-04
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 93 LRSVFVSGFPRDVDSAQLSEYFLAFGPVASVVMDKD-----KGVFAIVEMGDVGAREAVL 147
++ +FV G D + L +YF +G + ++ + +D K FA V D + ++
Sbjct: 125 VKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
Query: 148 SQSQHSLGGHRLRVRPR-EQKEFQSPASKSPKG 179
Q H++ GH V+ ++E QS S+ +G
Sbjct: 185 VQKYHTINGHNCEVKKALSKQEMQSAGSQRGRG 217
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,599,928
Number of Sequences: 37866
Number of extensions: 2134705
Number of successful extensions: 15495
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 654
Number of HSP's that attempted gapping in prelim test: 12106
Number of HSP's gapped (non-prelim): 3651
length of query: 912
length of database: 18,247,518
effective HSP length: 111
effective length of query: 801
effective length of database: 14,044,392
effective search space: 11249557992
effective search space used: 11249557992
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.