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Search of human proteins with 226342994
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|226342994 SLAM family member 9 isoform 3 [Homo sapiens]
(111 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|226342994 SLAM family member 9 isoform 3 [Homo sapiens] 234 8e-63
gi|226342992 SLAM family member 9 isoform 2 [Homo sapiens] 181 1e-46
gi|226342990 SLAM family member 9 isoform 1 [Homo sapiens] 181 1e-46
gi|4502687 CD84 molecule [Homo sapiens] 39 9e-04
gi|16418407 activating NK receptor precursor [Homo sapiens] 39 0.001
gi|55925578 lymphocyte antigen 9 isoform a [Homo sapiens] 36 0.006
gi|75991709 lymphocyte antigen 9 isoform b [Homo sapiens] 36 0.006
gi|148596944 C2 calcium-dependent domain containing 3 [Homo sapi... 30 0.54
gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo ... 27 2.7
gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo ... 27 2.7
gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo ... 27 2.7
gi|22027648 lipin 1 [Homo sapiens] 27 2.7
gi|83977452 discoidin domain receptor family, member 1 isoform c... 27 3.5
gi|83977450 discoidin domain receptor family, member 1 isoform a... 27 3.5
gi|91992162 mutL homolog 3 isoform 1 [Homo sapiens] 27 4.6
gi|91992160 mutL homolog 3 isoform 2 [Homo sapiens] 27 4.6
gi|122937470 carboxypeptidase N, polypeptide 2, 83kD [Homo sapiens] 27 4.6
gi|146231950 dehydrogenase/reductase (SDR family) member 13 [Hom... 27 4.6
gi|217330634 serine/threonine kinase 36 [Homo sapiens] 26 6.0
gi|169790915 carbamoyl-phosphate synthetase 1 isoform a precurso... 26 7.8
gi|21361331 carbamoyl-phosphate synthetase 1 isoform b precursor... 26 7.8
gi|5454102 transforming, acidic coiled-coil containing protein 3... 26 7.8
gi|24308394 hypothetical protein LOC140893 [Homo sapiens] 26 7.8
>gi|226342994 SLAM family member 9 isoform 3 [Homo sapiens]
Length = 111
Score = 234 bits (598), Expect = 8e-63
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 MCAFPWLLLLLLLQEGSQRRLWRWCGSEEVVAVLQESISLPLEIPPDEEVENIIWSSHKS 60
MCAFPWLLLLLLLQEGSQRRLWRWCGSEEVVAVLQESISLPLEIPPDEEVENIIWSSHKS
Sbjct: 1 MCAFPWLLLLLLLQEGSQRRLWRWCGSEEVVAVLQESISLPLEIPPDEEVENIIWSSHKS 60
Query: 61 LATVVPGKEGHPATIMVTNPHYQGQILTMLLRSLQQPSASWPRDCSSSCSW 111
LATVVPGKEGHPATIMVTNPHYQGQILTMLLRSLQQPSASWPRDCSSSCSW
Sbjct: 61 LATVVPGKEGHPATIMVTNPHYQGQILTMLLRSLQQPSASWPRDCSSSCSW 111
>gi|226342992 SLAM family member 9 isoform 2 [Homo sapiens]
Length = 198
Score = 181 bits (459), Expect = 1e-46
Identities = 85/86 (98%), Positives = 86/86 (100%)
Query: 1 MCAFPWLLLLLLLQEGSQRRLWRWCGSEEVVAVLQESISLPLEIPPDEEVENIIWSSHKS 60
MCAFPWLLLLLLLQEGSQRRLWRWCGSEEVVAVLQESISLPLEIPPDEEVENIIWSSHKS
Sbjct: 1 MCAFPWLLLLLLLQEGSQRRLWRWCGSEEVVAVLQESISLPLEIPPDEEVENIIWSSHKS 60
Query: 61 LATVVPGKEGHPATIMVTNPHYQGQI 86
LATVVPGKEGHPATIMVTNPHYQGQ+
Sbjct: 61 LATVVPGKEGHPATIMVTNPHYQGQV 86
>gi|226342990 SLAM family member 9 isoform 1 [Homo sapiens]
Length = 289
Score = 181 bits (459), Expect = 1e-46
Identities = 85/86 (98%), Positives = 86/86 (100%)
Query: 1 MCAFPWLLLLLLLQEGSQRRLWRWCGSEEVVAVLQESISLPLEIPPDEEVENIIWSSHKS 60
MCAFPWLLLLLLLQEGSQRRLWRWCGSEEVVAVLQESISLPLEIPPDEEVENIIWSSHKS
Sbjct: 1 MCAFPWLLLLLLLQEGSQRRLWRWCGSEEVVAVLQESISLPLEIPPDEEVENIIWSSHKS 60
Query: 61 LATVVPGKEGHPATIMVTNPHYQGQI 86
LATVVPGKEGHPATIMVTNPHYQGQ+
Sbjct: 61 LATVVPGKEGHPATIMVTNPHYQGQV 86
>gi|4502687 CD84 molecule [Homo sapiens]
Length = 328
Score = 38.9 bits (89), Expect = 9e-04
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 6 WLLLLLLLQEGSQRRLWRWCGSEE-----VVAVLQESISLPLEIPPDEEVENIIWSSHKS 60
W+LLL L + W ++ V +L ES++ P+ I +V+ I W+S S
Sbjct: 7 WILLLCL-------QTWPEAAGKDSEIFTVNGILGESVTFPVNIQEPRQVKIIAWTSKTS 59
Query: 61 LATVVPGKEGHPATIMVTNPHYQGQI 86
+A V PG + VT+ +Y +I
Sbjct: 60 VAYVTPGDSETAPVVTVTHRNYYERI 85
>gi|16418407 activating NK receptor precursor [Homo sapiens]
Length = 331
Score = 38.5 bits (88), Expect = 0.001
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 30 VVAVLQESISLPLEIPPDEEVENIIW-SSHKSLATVVPGKEGHPATIMVTNP 80
V +L ES++LPLE P E+V I W + SLA +VP + P I VTNP
Sbjct: 30 VNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSP-EIHVTNP 80
>gi|55925578 lymphocyte antigen 9 isoform a [Homo sapiens]
Length = 655
Score = 36.2 bits (82), Expect = 0.006
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 30 VVAVLQESISLPLEIPPDEEVENIIWSSHKSLATVVPGKEGHPATIMVTNPHYQGQI 86
V +L S++LPL I D E+EN+IW K+ KE TIMV + Y G++
Sbjct: 55 VSGILGGSVTLPLNISVDTEIENVIWIGPKNALAFARPKEN--VTIMVKS--YLGRL 107
Score = 32.0 bits (71), Expect = 0.11
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 28 EEVVAVLQESISLPLEIPPDEEVENIIWSSHKSL 61
E VV VL E ++LPL +P + E ++W + S+
Sbjct: 255 ETVVGVLGEPVTLPLALPACRDTEKVVWLFNTSI 288
>gi|75991709 lymphocyte antigen 9 isoform b [Homo sapiens]
Length = 193
Score = 36.2 bits (82), Expect = 0.006
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 30 VVAVLQESISLPLEIPPDEEVENIIWSSHKSLATVVPGKEGHPATIMVTNPHYQGQI 86
V +L S++LPL I D E+EN+IW K+ KE TIMV + Y G++
Sbjct: 55 VSGILGGSVTLPLNISVDTEIENVIWIGPKNALAFARPKEN--VTIMVKS--YLGRL 107
>gi|148596944 C2 calcium-dependent domain containing 3 [Homo sapiens]
Length = 1963
Score = 29.6 bits (65), Expect = 0.54
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 48 EEVENIIWSSHKSLATVVPGKEGHPATIMVTNPHYQGQILTMLL 91
E E++ WS SL V EG PAT+ ++ P I +LL
Sbjct: 1380 EAAEHLGWSFENSLKDFVRMDEGEPATVTISTPRLWLPIHCVLL 1423
>gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo
sapiens]
Length = 299
Score = 27.3 bits (59), Expect = 2.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 97 PSASWPRDCSSSCSW 111
P +SWP CS SC+W
Sbjct: 13 PKSSWPWCCSWSCAW 27
>gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo
sapiens]
Length = 299
Score = 27.3 bits (59), Expect = 2.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 97 PSASWPRDCSSSCSW 111
P +SWP CS SC+W
Sbjct: 13 PKSSWPWCCSWSCAW 27
>gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo
sapiens]
Length = 299
Score = 27.3 bits (59), Expect = 2.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 97 PSASWPRDCSSSCSW 111
P +SWP CS SC+W
Sbjct: 13 PKSSWPWCCSWSCAW 27
>gi|22027648 lipin 1 [Homo sapiens]
Length = 890
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 27 SEEVVAVLQESISLPLEIPPDEEVENIIWSSHKSLATVVPGKEGHP 72
S+E + +L+ S +LP +IPP ++ I + SLA + P +P
Sbjct: 188 SDEAMELLESSRTLPNDIPP---FQDDIPEENLSLAVIYPQSASYP 230
>gi|83977452 discoidin domain receptor family, member 1 isoform c
[Homo sapiens]
Length = 919
Score = 26.9 bits (58), Expect = 3.5
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 7 LLLLLLLQEGSQRRLWRWCGSEEVVAVLQESISLPLEIPPDEEVENIIWSSHKSLATVVP 66
LLLLL++ R WR S+ VL+E +++ L +P D + N + P
Sbjct: 428 LLLLLIIALMLWRLHWRRLLSKAERRVLEEELTVHLSVPGDTILINNRPGPREPPPYQEP 487
Query: 67 GKEGHP----------ATIMVTNPHYQGQILTMLL--RSLQQPSASWPR 103
G+P + ++++NP Y+ + T R P+ +W +
Sbjct: 488 RPRGNPPHSAPCVPNGSALLLSNPAYRLLLATYARPPRGPGPPTPAWAK 536
>gi|83977450 discoidin domain receptor family, member 1 isoform a
[Homo sapiens]
Length = 913
Score = 26.9 bits (58), Expect = 3.5
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 7 LLLLLLLQEGSQRRLWRWCGSEEVVAVLQESISLPLEIPPDEEVENIIWSSHKSLATVVP 66
LLLLL++ R WR S+ VL+E +++ L +P D + N + P
Sbjct: 428 LLLLLIIALMLWRLHWRRLLSKAERRVLEEELTVHLSVPGDTILINNRPGPREPPPYQEP 487
Query: 67 GKEGHP----------ATIMVTNPHYQGQILTMLL--RSLQQPSASWPR 103
G+P + ++++NP Y+ + T R P+ +W +
Sbjct: 488 RPRGNPPHSAPCVPNGSALLLSNPAYRLLLATYARPPRGPGPPTPAWAK 536
>gi|91992162 mutL homolog 3 isoform 1 [Homo sapiens]
Length = 1453
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 33 VLQESISLPLEIPPDEEVENIIWSSHKSL 61
+L ++ PLEI EE ++W HK+L
Sbjct: 1254 LLSSTLIPPLEITVTEEQRRLLWCYHKNL 1282
>gi|91992160 mutL homolog 3 isoform 2 [Homo sapiens]
Length = 1429
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 33 VLQESISLPLEIPPDEEVENIIWSSHKSL 61
+L ++ PLEI EE ++W HK+L
Sbjct: 1230 LLSSTLIPPLEITVTEEQRRLLWCYHKNL 1258
>gi|122937470 carboxypeptidase N, polypeptide 2, 83kD [Homo
sapiens]
Length = 545
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 6 WLLLLLLLQEGSQRRLWRWCGSEEVVAVLQESISLPLEIPPDEEVENIIWSSHKSLATVV 65
W LLLL + + C +EV +E ++PL+IPP + + +S +L T
Sbjct: 9 WTSLLLLARPAQPCPMGCDCFVQEVFCSDEELATVPLDIPPYTKNIIFVETSFTTLETRA 68
Query: 66 PGKEGHPATIMVTN 79
G + ++ N
Sbjct: 69 FGSNPNLTKVVFLN 82
>gi|146231950 dehydrogenase/reductase (SDR family) member 13 [Homo
sapiens]
Length = 377
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 43 EIPP---DEEVENIIWSSHKSLATVVPGKEGHP 72
E+PP D+ + +W + K LA + PG++ P
Sbjct: 289 EVPPAARDDRAAHRLWEASKRLAGLGPGEDAEP 321
>gi|217330634 serine/threonine kinase 36 [Homo sapiens]
Length = 1315
Score = 26.2 bits (56), Expect = 6.0
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 72 PATIMVTNP----HYQGQILTMLLRSLQQPSASWPRDCSSSCSW 111
PA + +T P Y G ++ +L +Q AS RD SSS W
Sbjct: 835 PAEVRLTPPGSCGFYDGLLILLLQLLTEQGKASLIRDMSSSEMW 878
>gi|169790915 carbamoyl-phosphate synthetase 1 isoform a precursor
[Homo sapiens]
Length = 1506
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 67 GKEGHPATIMVTNPHYQGQILTM 89
G G+P I T+P Y+GQILTM
Sbjct: 82 GLGGYPEAI--TDPAYKGQILTM 102
>gi|21361331 carbamoyl-phosphate synthetase 1 isoform b precursor
[Homo sapiens]
Length = 1500
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 67 GKEGHPATIMVTNPHYQGQILTM 89
G G+P I T+P Y+GQILTM
Sbjct: 76 GLGGYPEAI--TDPAYKGQILTM 96
>gi|5454102 transforming, acidic coiled-coil containing protein 3
[Homo sapiens]
Length = 838
Score = 25.8 bits (55), Expect = 7.8
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 38 ISLPLEIPPDEEVENIIWSSHKSLATVVPGKEGHPATIMVTNPHYQGQ 85
+ L E P E E + S+ SL T PG E P H QGQ
Sbjct: 475 VQLAAETPTAESKERALNSASTSLPTSCPGSEPVPT-------HQQGQ 515
>gi|24308394 hypothetical protein LOC140893 [Homo sapiens]
Length = 664
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 31 VAVLQESISLPLEIPPDEEVENIIWSSHKSLATVVPGKEGHPA 73
VA + +LP PD + I H ++A V PG + PA
Sbjct: 192 VAKISPGATLPESRAPDMSPQRISNQLHGTIAVVRPGSQACPA 234
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.132 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,052,156
Number of Sequences: 37866
Number of extensions: 214928
Number of successful extensions: 531
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 515
Number of HSP's gapped (non-prelim): 24
length of query: 111
length of database: 18,247,518
effective HSP length: 81
effective length of query: 30
effective length of database: 15,180,372
effective search space: 455411160
effective search space used: 455411160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.