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Search of human proteins with 225579074
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|225579074 seryl-tRNA synthetase 2 isoform a precursor [Homo
sapiens]
(520 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|225579074 seryl-tRNA synthetase 2 isoform a precursor [Homo s... 1048 0.0
gi|8923421 seryl-tRNA synthetase 2 isoform b precursor [Homo sap... 981 0.0
gi|16306548 seryl-tRNA synthetase [Homo sapiens] 168 1e-41
gi|218749820 hypothetical protein LOC84221 isoform 1 [Homo sapiens] 34 0.28
gi|109715862 gem (nuclear organelle) associated protein 8 [Homo ... 33 0.48
gi|109715864 gem (nuclear organelle) associated protein 8 [Homo ... 33 0.48
gi|8923481 gem (nuclear organelle) associated protein 8 [Homo sa... 33 0.48
gi|154354987 hook homolog 2 isoform 2 [Homo sapiens] 33 0.82
gi|154354985 hook homolog 2 isoform 1 [Homo sapiens] 33 0.82
gi|148762940 DVL-binding protein DAPLE [Homo sapiens] 32 1.4
gi|27477127 keratin 82 [Homo sapiens] 31 3.1
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 30 4.1
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 30 4.1
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 30 5.3
gi|239745211 PREDICTED: hypothetical protein XP_002343409 [Homo ... 30 7.0
gi|5803121 protein disulfide isomerase A5 [Homo sapiens] 30 7.0
gi|55770834 centromere protein F [Homo sapiens] 30 7.0
gi|217035154 RCSD domain containing 1 [Homo sapiens] 29 9.1
>gi|225579074 seryl-tRNA synthetase 2 isoform a precursor [Homo
sapiens]
Length = 520
Score = 1048 bits (2710), Expect = 0.0
Identities = 520/520 (100%), Positives = 520/520 (100%)
Query: 1 MAASMARRLWPLLTRRGFRPRGGCISNDSPRRSFTTEKRNRNLLYEYAREGYSALPQLDI 60
MAASMARRLWPLLTRRGFRPRGGCISNDSPRRSFTTEKRNRNLLYEYAREGYSALPQLDI
Sbjct: 1 MAASMARRLWPLLTRRGFRPRGGCISNDSPRRSFTTEKRNRNLLYEYAREGYSALPQLDI 60
Query: 61 ERFCACPEEAAHALELRKGELRSADLPAIISTWQELRQLQEQIRSLEEEKAAVTEAVRAL 120
ERFCACPEEAAHALELRKGELRSADLPAIISTWQELRQLQEQIRSLEEEKAAVTEAVRAL
Sbjct: 61 ERFCACPEEAAHALELRKGELRSADLPAIISTWQELRQLQEQIRSLEEEKAAVTEAVRAL 120
Query: 121 LANQDSGEVQQVRLDPGAGSIFGPTFLPFPGQLSLLVEAQLEEQFYLQALKLPNQTHPDV 180
LANQDSGEVQQVRLDPGAGSIFGPTFLPFPGQLSLLVEAQLEEQFYLQALKLPNQTHPDV
Sbjct: 121 LANQDSGEVQQVRLDPGAGSIFGPTFLPFPGQLSLLVEAQLEEQFYLQALKLPNQTHPDV 180
Query: 181 PVGDESQARVLHMVGDKPVFSFQPRGHLEIGEKLDIIRQKRLSHVSGHRSYYLRGAGALL 240
PVGDESQARVLHMVGDKPVFSFQPRGHLEIGEKLDIIRQKRLSHVSGHRSYYLRGAGALL
Sbjct: 181 PVGDESQARVLHMVGDKPVFSFQPRGHLEIGEKLDIIRQKRLSHVSGHRSYYLRGAGALL 240
Query: 241 QHGLVNFTFNKLLRRGFTPMTVPDLLRGAVFEGCGMTPNANPSQIYNIDPARFKDLNLAG 300
QHGLVNFTFNKLLRRGFTPMTVPDLLRGAVFEGCGMTPNANPSQIYNIDPARFKDLNLAG
Sbjct: 241 QHGLVNFTFNKLLRRGFTPMTVPDLLRGAVFEGCGMTPNANPSQIYNIDPARFKDLNLAG 300
Query: 301 TAEVGLAGYFMDHTVAFRDLPVRMVCSSTCYRAETNTGQEPRGLYRVHHFTKVEMFGVTG 360
TAEVGLAGYFMDHTVAFRDLPVRMVCSSTCYRAETNTGQEPRGLYRVHHFTKVEMFGVTG
Sbjct: 301 TAEVGLAGYFMDHTVAFRDLPVRMVCSSTCYRAETNTGQEPRGLYRVHHFTKVEMFGVTG 360
Query: 361 PGLEQSSQLLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRFGE 420
PGLEQSSQLLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRFGE
Sbjct: 361 PGLEQSSQLLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRFGE 420
Query: 421 VTSASNCTDFQSRRLHIMFQTEAGELQFAHTVNATACAVPRLLIALLESNQQKDGSVLVP 480
VTSASNCTDFQSRRLHIMFQTEAGELQFAHTVNATACAVPRLLIALLESNQQKDGSVLVP
Sbjct: 421 VTSASNCTDFQSRRLHIMFQTEAGELQFAHTVNATACAVPRLLIALLESNQQKDGSVLVP 480
Query: 481 PALQSYLGTDRITAPTHVPLQYIGPNQPRKPGLPGQPAVS 520
PALQSYLGTDRITAPTHVPLQYIGPNQPRKPGLPGQPAVS
Sbjct: 481 PALQSYLGTDRITAPTHVPLQYIGPNQPRKPGLPGQPAVS 520
>gi|8923421 seryl-tRNA synthetase 2 isoform b precursor [Homo
sapiens]
Length = 518
Score = 981 bits (2535), Expect = 0.0
Identities = 498/522 (95%), Positives = 500/522 (95%), Gaps = 6/522 (1%)
Query: 1 MAASMARRLWPLLTRRGFRPRGGCISNDSPRRSFTTEKRNRNLLYEYAREGYSALPQLDI 60
MAASMARRLWPLLTRRGFRPRGGCISNDSPRRSFTTEKRNRNLLYEYAREGYSALPQLDI
Sbjct: 1 MAASMARRLWPLLTRRGFRPRGGCISNDSPRRSFTTEKRNRNLLYEYAREGYSALPQLDI 60
Query: 61 ERFCACPEEAAHALELRKGELRSADLPAIISTWQELRQLQEQIRSLEEEKAAVTEAVRAL 120
ERFCACPEEAAHALELRKGELRSADLPAIISTWQELRQLQEQIRSLEEEKAAVTEAVRAL
Sbjct: 61 ERFCACPEEAAHALELRKGELRSADLPAIISTWQELRQLQEQIRSLEEEKAAVTEAVRAL 120
Query: 121 LANQDSGEVQQVRLDPGAGSIFGPTFLPFPGQLSLLV--EAQLEEQFYLQALKLPNQTHP 178
LANQDSGEVQQ DP + +L L EAQLEEQFYLQALKLPNQTHP
Sbjct: 121 LANQDSGEVQQ---DPKYQGL-RARGREIRKELVHLYPREAQLEEQFYLQALKLPNQTHP 176
Query: 179 DVPVGDESQARVLHMVGDKPVFSFQPRGHLEIGEKLDIIRQKRLSHVSGHRSYYLRGAGA 238
DVPVGDESQARVLHMVGDKPVFSFQPRGHLEIGEKLDIIRQKRLSHVSGHRSYYLRGAGA
Sbjct: 177 DVPVGDESQARVLHMVGDKPVFSFQPRGHLEIGEKLDIIRQKRLSHVSGHRSYYLRGAGA 236
Query: 239 LLQHGLVNFTFNKLLRRGFTPMTVPDLLRGAVFEGCGMTPNANPSQIYNIDPARFKDLNL 298
LLQHGLVNFTFNKLLRRGFTPMTVPDLLRGAVFEGCGMTPNANPSQIYNIDPARFKDLNL
Sbjct: 237 LLQHGLVNFTFNKLLRRGFTPMTVPDLLRGAVFEGCGMTPNANPSQIYNIDPARFKDLNL 296
Query: 299 AGTAEVGLAGYFMDHTVAFRDLPVRMVCSSTCYRAETNTGQEPRGLYRVHHFTKVEMFGV 358
AGTAEVGLAGYFMDHTVAFRDLPVRMVCSSTCYRAETNTGQEPRGLYRVHHFTKVEMFGV
Sbjct: 297 AGTAEVGLAGYFMDHTVAFRDLPVRMVCSSTCYRAETNTGQEPRGLYRVHHFTKVEMFGV 356
Query: 359 TGPGLEQSSQLLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRF 418
TGPGLEQSSQLLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRF
Sbjct: 357 TGPGLEQSSQLLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRF 416
Query: 419 GEVTSASNCTDFQSRRLHIMFQTEAGELQFAHTVNATACAVPRLLIALLESNQQKDGSVL 478
GEVTSASNCTDFQSRRLHIMFQTEAGELQFAHTVNATACAVPRLLIALLESNQQKDGSVL
Sbjct: 417 GEVTSASNCTDFQSRRLHIMFQTEAGELQFAHTVNATACAVPRLLIALLESNQQKDGSVL 476
Query: 479 VPPALQSYLGTDRITAPTHVPLQYIGPNQPRKPGLPGQPAVS 520
VPPALQSYLGTDRITAPTHVPLQYIGPNQPRKPGLPGQPAVS
Sbjct: 477 VPPALQSYLGTDRITAPTHVPLQYIGPNQPRKPGLPGQPAVS 518
>gi|16306548 seryl-tRNA synthetase [Homo sapiens]
Length = 514
Score = 168 bits (425), Expect = 1e-41
Identities = 101/342 (29%), Positives = 178/342 (52%), Gaps = 18/342 (5%)
Query: 160 QLEEQFYLQALKLPNQTHPDVPVGDESQA--RVLHMVGDKPVFSFQPRGHLEIGEKLDII 217
+LE + + ++ N HP VP+ ++ +V + GD V + H+++ +D
Sbjct: 123 KLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVR--KKYSHVDLVVMVDGF 180
Query: 218 RQKRLSHVSGHRSYYLRGAGALLQHGLVNFTFNKLLRRGFTPMTVPDLLRGAVFEGCGMT 277
++ + V+G R Y+L+G L+ L+ + L RG+ P+ P +R V +
Sbjct: 181 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQL 240
Query: 278 PNANPSQIYNI--------DPARFKDLNLAGTAEVGLAGYFMDHTVAFRDLPVRMVCSST 329
+ ++Y + D + + L T+E +A D + DLP++ ST
Sbjct: 241 SQFD-EELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLST 299
Query: 330 CYRAETNT-GQEPRGLYRVHHFTKVEMFGVTGPGLEQSSQLLEEFLSLQMEILTELGLHF 388
C+R E + G++ RG++RVH F K+E F + P +S ++ EE ++ E LG+ +
Sbjct: 300 CFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPY 359
Query: 389 RVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMF-QTE--AGE 445
++++ + L A +K D+EAW PG G F E+ S SNCTD+Q+RRL I + QT+ +
Sbjct: 360 HIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDK 419
Query: 446 LQFAHTVNATACAVPRLLIALLESNQQKDGSVLVPPALQSYL 487
++F H +NAT CA R + A+LE N Q + + VP L+ ++
Sbjct: 420 VEFVHMLNATMCATTRTICAILE-NYQTEKGITVPEKLKEFM 460
>gi|218749820 hypothetical protein LOC84221 isoform 1 [Homo sapiens]
Length = 340
Score = 34.3 bits (77), Expect = 0.28
Identities = 46/149 (30%), Positives = 62/149 (41%), Gaps = 20/149 (13%)
Query: 362 GLEQSSQLLEEFLSL--QMEILTELGLHFRVLDMPTQELG----LPAYRKFDIEAWMPGR 415
G E S+LL E L Q+ +L E + R+L QE G LP EA PG
Sbjct: 4 GGELMSRLLSENADLKKQVRLLKENQMLRRLLSQSCQEGGGHDLLPPRAHAYPEAGSPGS 63
Query: 416 G--RFGEVTSASNC-TDFQSRRLHIMFQTEAGELQFAHTVNATACAVPRLLIALLESNQQ 472
G FG TS ++ + Q+ L + + A T + CA P +Q
Sbjct: 64 GVPDFGRFTSVADTPSQLQTSSLEDLLCSHAPLSSEDDT--SPGCAAP---------SQA 112
Query: 473 KDGSVLVPPALQSYLGTDRITAPTHVPLQ 501
+ L PP S+ GTDR +P PLQ
Sbjct: 113 PFKAFLSPPEPHSHRGTDRKLSPLLSPLQ 141
>gi|109715862 gem (nuclear organelle) associated protein 8 [Homo
sapiens]
Length = 242
Score = 33.5 bits (75), Expect = 0.48
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 310 FMDHTVAFRDLPVRMVCSSTCYRAETNTGQEPRGLYRVHHFTKVEMFGVTGPGLEQSSQL 369
F DH VA++D P CSS+ +R +GQ PR R+ TK + +E S
Sbjct: 76 FYDHHVAWQDYP----CSSSHFR---RSGQHPRYSSRIQASTKEDQALSKEEEMETESDA 128
Query: 370 LEEFLSLQMEILTELGLHFRVLDMPTQE 397
E MEI EL +F + +E
Sbjct: 129 EVECDLSNMEITEELRQYFAETERHREE 156
>gi|109715864 gem (nuclear organelle) associated protein 8 [Homo
sapiens]
Length = 242
Score = 33.5 bits (75), Expect = 0.48
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 310 FMDHTVAFRDLPVRMVCSSTCYRAETNTGQEPRGLYRVHHFTKVEMFGVTGPGLEQSSQL 369
F DH VA++D P CSS+ +R +GQ PR R+ TK + +E S
Sbjct: 76 FYDHHVAWQDYP----CSSSHFR---RSGQHPRYSSRIQASTKEDQALSKEEEMETESDA 128
Query: 370 LEEFLSLQMEILTELGLHFRVLDMPTQE 397
E MEI EL +F + +E
Sbjct: 129 EVECDLSNMEITEELRQYFAETERHREE 156
>gi|8923481 gem (nuclear organelle) associated protein 8 [Homo
sapiens]
Length = 242
Score = 33.5 bits (75), Expect = 0.48
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 310 FMDHTVAFRDLPVRMVCSSTCYRAETNTGQEPRGLYRVHHFTKVEMFGVTGPGLEQSSQL 369
F DH VA++D P CSS+ +R +GQ PR R+ TK + +E S
Sbjct: 76 FYDHHVAWQDYP----CSSSHFR---RSGQHPRYSSRIQASTKEDQALSKEEEMETESDA 128
Query: 370 LEEFLSLQMEILTELGLHFRVLDMPTQE 397
E MEI EL +F + +E
Sbjct: 129 EVECDLSNMEITEELRQYFAETERHREE 156
>gi|154354987 hook homolog 2 isoform 2 [Homo sapiens]
Length = 717
Score = 32.7 bits (73), Expect = 0.82
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 75 ELRKGELRSADLPAIISTWQ----ELRQLQEQIRSLEEEKAAVTEAVRAL 120
ELR+ R+ L A +++ + ELR+L+ Q+R LEE A E R L
Sbjct: 299 ELRQSSERAGQLEATLTSCRRRLGELRELRRQVRQLEERNAGHAERTRQL 348
>gi|154354985 hook homolog 2 isoform 1 [Homo sapiens]
Length = 719
Score = 32.7 bits (73), Expect = 0.82
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 75 ELRKGELRSADLPAIISTWQ----ELRQLQEQIRSLEEEKAAVTEAVRAL 120
ELR+ R+ L A +++ + ELR+L+ Q+R LEE A E R L
Sbjct: 299 ELRQSSERAGQLEATLTSCRRRLGELRELRRQVRQLEERNAGHAERTRQL 348
>gi|148762940 DVL-binding protein DAPLE [Homo sapiens]
Length = 2028
Score = 32.0 bits (71), Expect = 1.4
Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 14/161 (8%)
Query: 6 ARRLWPLLTRRGFRPRGGCISNDSPRRSFTTEKRNRNLLYEYAR--EGYSALPQLDIERF 63
A+RLW + + + +DS + EK +R L E AR + L +L+ +
Sbjct: 841 AKRLWQQVELKD------AVLDDSTAKLSAVEKESRALDKELARCRDAAGKLKELEKDNR 894
Query: 64 CACPEEAAHALELRKGELRSADLPAIISTWQELRQLQEQIRSLEEEKAAVTEAVRALLAN 123
+ HA L LR ++ + +QL ++ L +E V LL
Sbjct: 895 DLTKQVTVHARTLTT--LRED----LVLEKLKSQQLSSELDKLSQELEKVGLNRELLLQE 948
Query: 124 QDSGEVQQVRLDPGAGSIFGPTFLPFPGQLSLLVEAQLEEQ 164
DSG + ++ G T L + +L+EAQ+EE+
Sbjct: 949 DDSGSDTKYKILEGRNESALKTTLAMKEEKIVLLEAQMEEK 989
>gi|27477127 keratin 82 [Homo sapiens]
Length = 513
Score = 30.8 bits (68), Expect = 3.1
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 367 SQLLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASN 426
SQ+ E + ++M+ EL + + ++ Q + + K + EAW R VT+ ++
Sbjct: 266 SQISETSVIVKMDNSRELDVDGIIAEIKAQYDDIASRSKAEAEAWYQCRYEELRVTAGNH 325
Query: 427 CTDFQSRRLHIMFQTEAGE--LQFAHTVNATACAVPRLLIALLESNQQKDGSV 477
C + ++R+ I+ + + Q V A C +L A+ E+ QQ + ++
Sbjct: 326 CDNLRNRKNEILEMNKLIQRLQQETENVKAQRC---KLEGAIAEAEQQGEAAL 375
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 30.4 bits (67), Expect = 4.1
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 468 ESNQQKDGSVLVPPALQ--SYLGTDRITAPTHVPLQYIGPNQPRKPGLP 514
ES++ DG PA Q S +GT T+P +Q G N+ RKP LP
Sbjct: 1045 ESSRISDGKKQEGPATQVDSAVGTLPATSPQSTSVQAKGTNKLRKPKLP 1093
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a [Homo
sapiens]
Length = 1450
Score = 30.4 bits (67), Expect = 4.1
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 468 ESNQQKDGSVLVPPALQ--SYLGTDRITAPTHVPLQYIGPNQPRKPGLP 514
ES++ DG PA Q S +GT T+P +Q G N+ RKP LP
Sbjct: 1045 ESSRISDGKKQEGPATQVDSAVGTLPATSPQSTSVQAKGTNKLRKPKLP 1093
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 30.0 bits (66), Expect = 5.3
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 123 NQDSGEVQQVRLDPGAGSIFGPTFLPFPGQL---SLLVEAQLEEQFYLQALKLPNQTHPD 179
N + QQ + GAGS+ GP+ FPG L SL +++L ++ LQ + Q
Sbjct: 3674 NTALAQQQQQQHSGGAGSLAGPSGGFFPGNLALRSLGPDSRLLQERQLQLQQQRMQLAQK 3733
Query: 180 VPVGDESQARVLHMVGDKPVFSFQPRG 206
+ + Q + H++G + Q +G
Sbjct: 3734 LQQQQQQQQQQQHLLGQVAIQQQQQQG 3760
>gi|239745211 PREDICTED: hypothetical protein XP_002343409 [Homo
sapiens]
Length = 1281
Score = 29.6 bits (65), Expect = 7.0
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 20/148 (13%)
Query: 93 WQELRQLQEQIRSLE-----EEKAAVTEAVRALLANQDSGEVQQVRLDPGAGSIFGPTFL 147
WQ +R++ EQI L E A E V L + E + V + S+ GP L
Sbjct: 1034 WQRMREMSEQIGHLIVPGICEMGGAQPEVVMGLGFVEVGAEREMVACPAASPSLQGPFPL 1093
Query: 148 PFPGQLSLLVEAQLEEQFYLQAL-----KLPNQT----HPDVPVG-----DESQARVLHM 193
F GQ+ L E ++ +Q L +L NQ P+ P G + QA H+
Sbjct: 1094 CF-GQVHTLREERVHSMSRVQELETILAELRNQVAEPLPPEPPAGPSEVEQKLQAEAEHL 1152
Query: 194 VGDKPVFSFQPRGHLEIGEKLDIIRQKR 221
+ + Q + +E E L + Q++
Sbjct: 1153 WKELENLAGQLQAQVEENEGLSHLNQEQ 1180
>gi|5803121 protein disulfide isomerase A5 [Homo sapiens]
Length = 519
Score = 29.6 bits (65), Expect = 7.0
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 144 PTFLPFPGQLSLLVEAQLEEQFYLQALKLPNQTHPDVPVGDESQARVLHMVGD 196
PT F V ++ +L+ ++ P P P +E Q VLH+VGD
Sbjct: 353 PTLKYFKNGEKYAVPVLRTKKKFLEWMQNPEAPPPPEPTWEEQQTSVLHLVGD 405
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 29.6 bits (65), Expect = 7.0
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 14/92 (15%)
Query: 57 QLDIERFCACPEEAAHALELRKGELRSADLPAIISTWQELRQLQEQ--IRSLEEEKAAV- 113
+LD+ + E ++ ++G+L ++L ++S+++ L + +EQ I+ EE K AV
Sbjct: 2202 ELDLVTLRSEKENLTKQIQEKQGQL--SELDKLLSSFKSLLEEKEQAEIQIKEESKTAVE 2259
Query: 114 ---------TEAVRALLANQDSGEVQQVRLDP 136
EAV AL +Q+ + + LDP
Sbjct: 2260 MLQNQLKELNEAVAALCGDQEIMKATEQSLDP 2291
>gi|217035154 RCSD domain containing 1 [Homo sapiens]
Length = 416
Score = 29.3 bits (64), Expect = 9.1
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 463 LIALLESNQQKDGSVLVPPALQSYLGTDRITAPTHVPLQYIGPNQPRKPGLPGQPA 518
LI L++N D + L+P A G + +P H P P+ P PG+ +P+
Sbjct: 85 LIEKLQANLTFDPAALLPGASPKSPGLKAMVSPFHSP-----PSTPSSPGVRSRPS 135
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,072,969
Number of Sequences: 37866
Number of extensions: 996263
Number of successful extensions: 3068
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3052
Number of HSP's gapped (non-prelim): 28
length of query: 520
length of database: 18,247,518
effective HSP length: 107
effective length of query: 413
effective length of database: 14,195,856
effective search space: 5862888528
effective search space used: 5862888528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.