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Search of human proteins with 22547138
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22547138 mitochondrial ribosomal protein L4 isoform a [Homo
sapiens]
(311 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22547136 mitochondrial ribosomal protein L4 isoform a [Homo s... 639 0.0
gi|22547138 mitochondrial ribosomal protein L4 isoform a [Homo s... 639 0.0
gi|22547140 mitochondrial ribosomal protein L4 isoform b [Homo s... 503 e-142
gi|239756643 PREDICTED: hypothetical protein [Homo sapiens] 33 0.25
gi|239745624 PREDICTED: hypothetical protein XP_002344159 [Homo ... 33 0.25
gi|190014615 hypothetical protein LOC157983 [Homo sapiens] 33 0.32
gi|239751132 PREDICTED: hypothetical protein [Homo sapiens] 32 0.55
gi|145580575 C-terminal binding protein 2 isoform 2 [Homo sapiens] 30 2.1
gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens] 30 2.1
gi|189011568 adenomatous polyposis coli [Homo sapiens] 30 3.6
gi|189011566 adenomatous polyposis coli [Homo sapiens] 30 3.6
gi|53759122 adenomatous polyposis coli [Homo sapiens] 30 3.6
gi|13540490 BTB and CNC homology 1, basic leucine zipper transcr... 30 3.6
gi|153791630 bromodomain and WD repeat domain containing 3 [Homo... 29 4.7
gi|117938768 GNAS complex locus alex [Homo sapiens] 29 6.1
gi|4759156 small nuclear ribonucleoprotein polypeptide A [Homo s... 29 6.1
gi|153792074 proline rich 12 [Homo sapiens] 29 6.1
gi|239749498 PREDICTED: hypothetical protein [Homo sapiens] 28 8.0
gi|239743634 PREDICTED: hypothetical protein XP_002342919 [Homo ... 28 8.0
gi|7657671 upstream binding transcription factor, RNA polymerase... 28 8.0
gi|155029552 hypothetical protein LOC388115 [Homo sapiens] 28 8.0
>gi|22547136 mitochondrial ribosomal protein L4 isoform a [Homo
sapiens]
Length = 311
Score = 639 bits (1648), Expect = 0.0
Identities = 311/311 (100%), Positives = 311/311 (100%)
Query: 1 MLQFVRAGARAWLRPTGSQGLSSLAEEAARATENPEQVASEGLPEPVLRKVELPVPTHRR 60
MLQFVRAGARAWLRPTGSQGLSSLAEEAARATENPEQVASEGLPEPVLRKVELPVPTHRR
Sbjct: 1 MLQFVRAGARAWLRPTGSQGLSSLAEEAARATENPEQVASEGLPEPVLRKVELPVPTHRR 60
Query: 61 PVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEV 120
PVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEV
Sbjct: 61 PVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEV 120
Query: 121 RGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTV 180
RGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTV
Sbjct: 121 RGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTV 180
Query: 181 KLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTF 240
KLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTF
Sbjct: 181 KLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTF 240
Query: 241 NLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKLLWQDSRYRPLYPFSLPYSDFPRPLPHA 300
NLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKLLWQDSRYRPLYPFSLPYSDFPRPLPHA
Sbjct: 241 NLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKLLWQDSRYRPLYPFSLPYSDFPRPLPHA 300
Query: 301 TQGPAATPYHC 311
TQGPAATPYHC
Sbjct: 301 TQGPAATPYHC 311
>gi|22547138 mitochondrial ribosomal protein L4 isoform a [Homo
sapiens]
Length = 311
Score = 639 bits (1648), Expect = 0.0
Identities = 311/311 (100%), Positives = 311/311 (100%)
Query: 1 MLQFVRAGARAWLRPTGSQGLSSLAEEAARATENPEQVASEGLPEPVLRKVELPVPTHRR 60
MLQFVRAGARAWLRPTGSQGLSSLAEEAARATENPEQVASEGLPEPVLRKVELPVPTHRR
Sbjct: 1 MLQFVRAGARAWLRPTGSQGLSSLAEEAARATENPEQVASEGLPEPVLRKVELPVPTHRR 60
Query: 61 PVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEV 120
PVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEV
Sbjct: 61 PVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEV 120
Query: 121 RGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTV 180
RGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTV
Sbjct: 121 RGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTV 180
Query: 181 KLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTF 240
KLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTF
Sbjct: 181 KLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTF 240
Query: 241 NLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKLLWQDSRYRPLYPFSLPYSDFPRPLPHA 300
NLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKLLWQDSRYRPLYPFSLPYSDFPRPLPHA
Sbjct: 241 NLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKLLWQDSRYRPLYPFSLPYSDFPRPLPHA 300
Query: 301 TQGPAATPYHC 311
TQGPAATPYHC
Sbjct: 301 TQGPAATPYHC 311
>gi|22547140 mitochondrial ribosomal protein L4 isoform b [Homo
sapiens]
Length = 263
Score = 503 bits (1294), Expect = e-142
Identities = 247/247 (100%), Positives = 247/247 (100%)
Query: 1 MLQFVRAGARAWLRPTGSQGLSSLAEEAARATENPEQVASEGLPEPVLRKVELPVPTHRR 60
MLQFVRAGARAWLRPTGSQGLSSLAEEAARATENPEQVASEGLPEPVLRKVELPVPTHRR
Sbjct: 1 MLQFVRAGARAWLRPTGSQGLSSLAEEAARATENPEQVASEGLPEPVLRKVELPVPTHRR 60
Query: 61 PVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEV 120
PVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEV
Sbjct: 61 PVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEV 120
Query: 121 RGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTV 180
RGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTV
Sbjct: 121 RGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTV 180
Query: 181 KLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTF 240
KLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTF
Sbjct: 181 KLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTF 240
Query: 241 NLIPAVG 247
NLIPAVG
Sbjct: 241 NLIPAVG 247
>gi|239756643 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 33.5 bits (75), Expect = 0.25
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 109 ISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTS 160
++ A R VRGG +PWP G G R +R+ R GG G P S
Sbjct: 48 VAIAAEPQRDTVRGGRARPWPAAGMGARR---VRAEGARAGGGGDGYAAPAS 96
>gi|239745624 PREDICTED: hypothetical protein XP_002344159 [Homo
sapiens]
Length = 165
Score = 33.5 bits (75), Expect = 0.25
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 109 ISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTS 160
++ A R VRGG +PWP G G R +R+ R GG G P S
Sbjct: 48 VAIAAEPQRDTVRGGRARPWPAAGMGARR---VRAEGARAGGGGDGYAAPAS 96
>gi|190014615 hypothetical protein LOC157983 [Homo sapiens]
Length = 295
Score = 33.1 bits (74), Expect = 0.32
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 24/107 (22%)
Query: 126 KPWPQKGTGRARH--GSIRSPLWRGGGVAHGPRGPT----SYYYMLPMKVRALGLKVALT 179
KP +G RAR G +R P WR G G RGP+ S Y+ + RAL L
Sbjct: 190 KPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPSAELASRYW---GRRRALPGAADLR 246
Query: 180 VKLAQDD----------LHIMDSLELP-----TGDPQYLTELAHYRR 211
K A+ D LH+ ++ LP +G+P E+ ++ R
Sbjct: 247 PKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGEVGNHPR 293
>gi|239751132 PREDICTED: hypothetical protein [Homo sapiens]
Length = 118
Score = 32.3 bits (72), Expect = 0.55
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 109 ISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTS 160
++ A R VRGG +PWP G G R +R+ R GG G P S
Sbjct: 35 VAIAAEPQRDTVRGGRARPWPAAGMGARR---VRAEGARAGGGGDGYAVPAS 83
>gi|145580575 C-terminal binding protein 2 isoform 2 [Homo sapiens]
Length = 985
Score = 30.4 bits (67), Expect = 2.1
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 15 PTGSQGLS---SLAEEAARATENPEQVASEGLPEPVLRKVELPVPTHRRPVQAWVESLRG 71
P SQ L S ++ AR T P V++ PEP +R + P H RP+ A ++ R
Sbjct: 525 PPASQSLHTPHSPYQKVARRTGAPIIVSTMLAPEPSIRPQIMNGPLHPRPLVALLDG-RD 583
Query: 72 FEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEV 120
E L DL F A +H+ + + + + T TR ++
Sbjct: 584 CTVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITLTREDL 632
>gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens]
Length = 483
Score = 30.4 bits (67), Expect = 2.1
Identities = 17/39 (43%), Positives = 18/39 (46%)
Query: 122 GGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTS 160
GGG G+GRAR S P GGG GP G S
Sbjct: 3 GGGPSGGGPGGSGRARTSSFAEPGGGGGGGGGGPGGSAS 41
>gi|189011568 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 29.6 bits (65), Expect = 3.6
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 21 LSSLAEEAARATENPEQVASEGLPEPVLRK-VELPV-----PTHRRPVQAWVESLRGFEQ 74
+S++ +++R + P Q AS+ LP PV RK +LPV +R Q V G +
Sbjct: 1580 ISAMPTKSSRKAKKPAQTASK-LPPPVARKPSQLPVYKLLPSQNRLQPQKHVSFTPGDDM 1638
Query: 75 ERVGLADLHPDVFATAPRLDIL 96
RV + P F+TA L L
Sbjct: 1639 PRVYCVEGTPINFSTATSLSDL 1660
>gi|189011566 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 29.6 bits (65), Expect = 3.6
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 21 LSSLAEEAARATENPEQVASEGLPEPVLRK-VELPV-----PTHRRPVQAWVESLRGFEQ 74
+S++ +++R + P Q AS+ LP PV RK +LPV +R Q V G +
Sbjct: 1580 ISAMPTKSSRKAKKPAQTASK-LPPPVARKPSQLPVYKLLPSQNRLQPQKHVSFTPGDDM 1638
Query: 75 ERVGLADLHPDVFATAPRLDIL 96
RV + P F+TA L L
Sbjct: 1639 PRVYCVEGTPINFSTATSLSDL 1660
>gi|53759122 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 29.6 bits (65), Expect = 3.6
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 21 LSSLAEEAARATENPEQVASEGLPEPVLRK-VELPV-----PTHRRPVQAWVESLRGFEQ 74
+S++ +++R + P Q AS+ LP PV RK +LPV +R Q V G +
Sbjct: 1580 ISAMPTKSSRKAKKPAQTASK-LPPPVARKPSQLPVYKLLPSQNRLQPQKHVSFTPGDDM 1638
Query: 75 ERVGLADLHPDVFATAPRLDIL 96
RV + P F+TA L L
Sbjct: 1639 PRVYCVEGTPINFSTATSLSDL 1660
>gi|13540490 BTB and CNC homology 1, basic leucine zipper
transcription factor 2 [Homo sapiens]
Length = 841
Score = 29.6 bits (65), Expect = 3.6
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 22 SSLAEEAARATENPEQVASEGLPEPVLRKVELPVPTHRRPVQAWVESLRGFEQERVG 78
S L++E R ++PEQ+ + PVLR ++LP + P E Q VG
Sbjct: 707 SCLSQEVCRDIQSPEQIQALHRYCPVLRPMDLPTASSINPAPLGAEQNIAASQCAVG 763
>gi|153791630 bromodomain and WD repeat domain containing 3 [Homo
sapiens]
Length = 1802
Score = 29.3 bits (64), Expect = 4.7
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 111 YAKTKTRAEVR---GGGRKPWPQKGT-GRARHGSIRSPLWRGGGVAHGPRG 157
+ +T+ + ++R G G++ W +GT GR R G R W GG G RG
Sbjct: 1645 FIQTRPKRKLRKQHGNGKRNWKTRGTGGRGRWG--RWGRWSRGGRGRGGRG 1693
>gi|117938768 GNAS complex locus alex [Homo sapiens]
Length = 626
Score = 28.9 bits (63), Expect = 6.1
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 15 PTGSQGL-SSLAEEAARATENPEQVASEGLPEPVLRKVELPVPTHRRPVQAWVESLRGFE 73
P GS L S+ +R T P + PEP +R+ E P RR Q W E L
Sbjct: 253 PLGSTTLPSTWTAPQSRLTARPSRS-----PEPQIRESEQRDPQLRRKQQRWKEPLMPRR 307
Query: 74 QERVGLADLHP 84
+E+ L P
Sbjct: 308 EEKYPLRGTDP 318
>gi|4759156 small nuclear ribonucleoprotein polypeptide A [Homo
sapiens]
Length = 282
Score = 28.9 bits (63), Expect = 6.1
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
Query: 35 PEQVASEGLPEPVLRKVELPVPTHRRPVQAWVESLRGFEQER-------VGLADLHPDVF 87
P Q SE P +L LP T+ + GF++ R + + +V
Sbjct: 197 PAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQ 256
Query: 88 ATAPRLDILHQVAMWQKNFKRISYAK 113
A A R D L + Q N +IS+AK
Sbjct: 257 AGAAR-DALQGFKITQNNAMKISFAK 281
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 28.9 bits (63), Expect = 6.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 120 VRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGP 158
VR RKPW + R G ++P+ GG A P+ P
Sbjct: 1659 VRVCARKPWHRPPVPVRRSGQAKNPVSAGGSSAPPPKAP 1697
>gi|239749498 PREDICTED: hypothetical protein [Homo sapiens]
Length = 692
Score = 28.5 bits (62), Expect = 8.0
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
Query: 27 EAARATENPEQVASEGLPEPVLRKVELPVPTHRRPVQAW-VESLR--GFEQE 75
E+ + E EQV EG P P + P P R+ Q W VESLR G E+E
Sbjct: 639 ESPASGEGAEQVQREGQPAP-----QSPAPQERK--QPWRVESLRDSGLEEE 683
>gi|239743634 PREDICTED: hypothetical protein XP_002342919 [Homo
sapiens]
Length = 692
Score = 28.5 bits (62), Expect = 8.0
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
Query: 27 EAARATENPEQVASEGLPEPVLRKVELPVPTHRRPVQAW-VESLR--GFEQE 75
E+ + E EQV EG P P + P P R+ Q W VESLR G E+E
Sbjct: 639 ESPASGEGAEQVQREGQPAP-----QSPAPQERK--QPWRVESLRDSGLEEE 683
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 28.5 bits (62), Expect = 8.0
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 52 ELPVPTHRRPVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQ----VAMWQKNFK 107
ELP + +Q + + FE+ + HPD+ A + DI + +W + K
Sbjct: 152 ELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKKSDIPEKPKTPQQLWYTHEK 211
Query: 108 RISYAKTK---TRAEVRGGGRKPWPQ 130
++ Y K + T EV+ K W Q
Sbjct: 212 KV-YLKVRPDATTKEVKDSLGKQWSQ 236
>gi|155029552 hypothetical protein LOC388115 [Homo sapiens]
Length = 534
Score = 28.5 bits (62), Expect = 8.0
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 13/58 (22%)
Query: 100 AMWQKNFKRISYAKTKTRAEVRGGGRKPW-------------PQKGTGRARHGSIRSP 144
A W++ ++I A+ + +G R+PW +G G AR GS R P
Sbjct: 236 AQWKQEREQIDLARLARHRDAQGDWRRPWDLDKAKSTLQDCSQLRGEGPARAGSRRGP 293
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,296,706
Number of Sequences: 37866
Number of extensions: 651828
Number of successful extensions: 1935
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1919
Number of HSP's gapped (non-prelim): 27
length of query: 311
length of database: 18,247,518
effective HSP length: 102
effective length of query: 209
effective length of database: 14,385,186
effective search space: 3006503874
effective search space used: 3006503874
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.