Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 115430099
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|115430099 thyroid stimulating hormone, beta precursor [Homo
sapiens]
(138 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|115430099 thyroid stimulating hormone, beta precursor [Homo s... 300 3e-82
gi|66528995 follicle stimulating hormone, beta polypeptide precu... 107 2e-24
gi|4503791 follicle stimulating hormone, beta polypeptide precur... 107 2e-24
gi|4504989 luteinizing hormone beta subunit precursor [Homo sapi... 100 7e-22
gi|4502789 chorionic gonadotropin beta 3 subunit precursor [Homo... 96 9e-21
gi|15451748 chorionic gonadotropin, beta polypeptide 5 precursor... 96 9e-21
gi|132566538 chorionic gonadotropin, beta polypeptide 2 [Homo sa... 96 9e-21
gi|132566537 chorionic gonadotropin, beta polypeptide 1 [Homo sa... 96 9e-21
gi|15451750 chorionic gonadotropin, beta polypeptide 7 precursor... 96 9e-21
gi|15426252 chorionic gonadotropin, beta polypeptide 8 precursor... 96 9e-21
gi|150378543 MYST histone acetyltransferase (monocytic leukemia)... 29 1.1
gi|150378463 MYST histone acetyltransferase (monocytic leukemia)... 29 1.1
gi|150378493 MYST histone acetyltransferase (monocytic leukemia)... 29 1.1
gi|52317202 olfactory receptor, family 2, subfamily L, member 2 ... 29 1.1
gi|14917117 keratin 33A [Homo sapiens] 27 7.0
gi|15451921 platelet derived growth factor D isoform 2 precursor... 26 9.2
gi|226442878 ADAMTS-like 5 [Homo sapiens] 26 9.2
gi|5031897 mab-21-like protein 1 [Homo sapiens] 26 9.2
gi|154937359 cysteine-rich PAK1 inhibitor [Homo sapiens] 26 9.2
>gi|115430099 thyroid stimulating hormone, beta precursor [Homo
sapiens]
Length = 138
Score = 300 bits (768), Expect = 3e-82
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MTALFLMSMLFGLTCGQAMSFCIPTEYTMHIERRECAYCLTINTTICAGYCMTRDINGKL 60
MTALFLMSMLFGLTCGQAMSFCIPTEYTMHIERRECAYCLTINTTICAGYCMTRDINGKL
Sbjct: 1 MTALFLMSMLFGLTCGQAMSFCIPTEYTMHIERRECAYCLTINTTICAGYCMTRDINGKL 60
Query: 61 FLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDCIHEAI 120
FLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDCIHEAI
Sbjct: 61 FLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDCIHEAI 120
Query: 121 KTNYCTKPQKSYLVGFSV 138
KTNYCTKPQKSYLVGFSV
Sbjct: 121 KTNYCTKPQKSYLVGFSV 138
>gi|66528995 follicle stimulating hormone, beta polypeptide
precursor [Homo sapiens]
Length = 129
Score = 107 bits (268), Expect = 2e-24
Identities = 49/122 (40%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Query: 7 MSMLFGLTCGQAM--SFCIPTEYTMHIERRECAYCLTINTTICAGYCMTRDINGKLFLPK 64
+ F C +A+ + C T T+ IE+ EC +C++INTT CAGYC TRD+ K P
Sbjct: 4 LQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKD--PA 61
Query: 65 YALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDCIHEAIKTNY 124
Q CT+++ +Y TV +PGC H ++YPVA C CGKC++D +DC + +Y
Sbjct: 62 RPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDCTVRGLGPSY 121
Query: 125 CT 126
C+
Sbjct: 122 CS 123
>gi|4503791 follicle stimulating hormone, beta polypeptide precursor
[Homo sapiens]
Length = 129
Score = 107 bits (268), Expect = 2e-24
Identities = 49/122 (40%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Query: 7 MSMLFGLTCGQAM--SFCIPTEYTMHIERRECAYCLTINTTICAGYCMTRDINGKLFLPK 64
+ F C +A+ + C T T+ IE+ EC +C++INTT CAGYC TRD+ K P
Sbjct: 4 LQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKD--PA 61
Query: 65 YALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDCIHEAIKTNY 124
Q CT+++ +Y TV +PGC H ++YPVA C CGKC++D +DC + +Y
Sbjct: 62 RPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDCTVRGLGPSY 121
Query: 125 CT 126
C+
Sbjct: 122 CS 123
>gi|4504989 luteinizing hormone beta subunit precursor [Homo
sapiens]
Length = 141
Score = 99.8 bits (247), Expect = 7e-22
Identities = 50/114 (43%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Query: 21 FCIPTEYTMHIERRECAYCLTINTTICAGYCMTRDINGKLFLPKYALSQDVCTYRDFIYR 80
+C P + +E+ C C+T+NTTICAGYC T + LP L Q VCTYRD +
Sbjct: 28 WCHPINAILAVEKEGCPVCITVNTTICAGYCPTMMRVLQAVLPP--LPQVVCTYRDVRFE 85
Query: 81 TVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDCIHEAIKTNYCTKPQKSYLV 134
++ +PGCP V P S+PVALSC+CG C SDC C PQ S L+
Sbjct: 86 SIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTSDCGGPKDHPLTCDHPQLSGLL 139
>gi|4502789 chorionic gonadotropin beta 3 subunit precursor [Homo
sapiens]
Length = 165
Score = 95.9 bits (237), Expect = 9e-21
Identities = 46/96 (47%), Positives = 58/96 (60%), Gaps = 6/96 (6%)
Query: 22 CIPTEYTMHIERRECAYCLTINTTICAGYC--MTRDINGKLFLPKYALSQDVCTYRDFIY 79
C P T+ +E+ C C+T+NTTICAGYC MTR + G L AL Q VC YRD +
Sbjct: 29 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVL----PALPQVVCNYRDVRF 84
Query: 80 RTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDC 115
++ +PGCP V P SY VALSC+C C +DC
Sbjct: 85 ESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
>gi|15451748 chorionic gonadotropin, beta polypeptide 5 precursor
[Homo sapiens]
Length = 165
Score = 95.9 bits (237), Expect = 9e-21
Identities = 46/96 (47%), Positives = 58/96 (60%), Gaps = 6/96 (6%)
Query: 22 CIPTEYTMHIERRECAYCLTINTTICAGYC--MTRDINGKLFLPKYALSQDVCTYRDFIY 79
C P T+ +E+ C C+T+NTTICAGYC MTR + G L AL Q VC YRD +
Sbjct: 29 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVL----PALPQVVCNYRDVRF 84
Query: 80 RTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDC 115
++ +PGCP V P SY VALSC+C C +DC
Sbjct: 85 ESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
>gi|132566538 chorionic gonadotropin, beta polypeptide 2 [Homo
sapiens]
Length = 163
Score = 95.9 bits (237), Expect = 9e-21
Identities = 46/96 (47%), Positives = 58/96 (60%), Gaps = 6/96 (6%)
Query: 22 CIPTEYTMHIERRECAYCLTINTTICAGYC--MTRDINGKLFLPKYALSQDVCTYRDFIY 79
C P T+ +E+ C C+T+NTTICAGYC MTR + G L AL Q VC YRD +
Sbjct: 27 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVL----PALPQVVCNYRDVRF 82
Query: 80 RTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDC 115
++ +PGCP V P SY VALSC+C C +DC
Sbjct: 83 ESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 118
>gi|132566537 chorionic gonadotropin, beta polypeptide 1 [Homo
sapiens]
Length = 155
Score = 95.9 bits (237), Expect = 9e-21
Identities = 46/96 (47%), Positives = 58/96 (60%), Gaps = 6/96 (6%)
Query: 22 CIPTEYTMHIERRECAYCLTINTTICAGYC--MTRDINGKLFLPKYALSQDVCTYRDFIY 79
C P T+ +E+ C C+T+NTTICAGYC MTR + G L AL Q VC YRD +
Sbjct: 27 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVL----PALPQVVCNYRDVRF 82
Query: 80 RTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDC 115
++ +PGCP V P SY VALSC+C C +DC
Sbjct: 83 ESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 118
>gi|15451750 chorionic gonadotropin, beta polypeptide 7 precursor
[Homo sapiens]
Length = 165
Score = 95.9 bits (237), Expect = 9e-21
Identities = 46/96 (47%), Positives = 58/96 (60%), Gaps = 6/96 (6%)
Query: 22 CIPTEYTMHIERRECAYCLTINTTICAGYC--MTRDINGKLFLPKYALSQDVCTYRDFIY 79
C P T+ +E+ C C+T+NTTICAGYC MTR + G L AL Q VC YRD +
Sbjct: 29 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVL----PALPQVVCNYRDVRF 84
Query: 80 RTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDC 115
++ +PGCP V P SY VALSC+C C +DC
Sbjct: 85 ESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
>gi|15426252 chorionic gonadotropin, beta polypeptide 8 precursor
[Homo sapiens]
Length = 165
Score = 95.9 bits (237), Expect = 9e-21
Identities = 46/96 (47%), Positives = 58/96 (60%), Gaps = 6/96 (6%)
Query: 22 CIPTEYTMHIERRECAYCLTINTTICAGYC--MTRDINGKLFLPKYALSQDVCTYRDFIY 79
C P T+ +E+ C C+T+NTTICAGYC MTR + G L AL Q VC YRD +
Sbjct: 29 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVL----PALPQVVCNYRDVRF 84
Query: 80 RTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDC 115
++ +PGCP V P SY VALSC+C C +DC
Sbjct: 85 ESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
>gi|150378543 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 29.3 bits (64), Expect = 1.1
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 12/108 (11%)
Query: 31 IERRECAYCLTINTTICAGYCMTRDINGKLFLPKYALSQDVCTYRDFIYRTVEIPGCPLH 90
I R+ ++ + YC + KLFL L DV + ++ ++ GC H
Sbjct: 570 IYRKNNISVFEVDGNVSTIYCQNLCLLAKLFLDHKTLYYDVEPFLFYVLTQNDVKGC--H 627
Query: 91 VAPYFSYPVALSCKCGKCNTDYS-DCIHEAIKTNYCTKPQKSYLVGFS 137
+ YFS K C Y+ CI I Y K +L+ FS
Sbjct: 628 LVGYFS-------KEKHCQQKYNVSCI--MILPQYQRKGYGRFLIDFS 666
>gi|150378463 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 29.3 bits (64), Expect = 1.1
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 12/108 (11%)
Query: 31 IERRECAYCLTINTTICAGYCMTRDINGKLFLPKYALSQDVCTYRDFIYRTVEIPGCPLH 90
I R+ ++ + YC + KLFL L DV + ++ ++ GC H
Sbjct: 570 IYRKNNISVFEVDGNVSTIYCQNLCLLAKLFLDHKTLYYDVEPFLFYVLTQNDVKGC--H 627
Query: 91 VAPYFSYPVALSCKCGKCNTDYS-DCIHEAIKTNYCTKPQKSYLVGFS 137
+ YFS K C Y+ CI I Y K +L+ FS
Sbjct: 628 LVGYFS-------KEKHCQQKYNVSCI--MILPQYQRKGYGRFLIDFS 666
>gi|150378493 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 29.3 bits (64), Expect = 1.1
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 12/108 (11%)
Query: 31 IERRECAYCLTINTTICAGYCMTRDINGKLFLPKYALSQDVCTYRDFIYRTVEIPGCPLH 90
I R+ ++ + YC + KLFL L DV + ++ ++ GC H
Sbjct: 570 IYRKNNISVFEVDGNVSTIYCQNLCLLAKLFLDHKTLYYDVEPFLFYVLTQNDVKGC--H 627
Query: 91 VAPYFSYPVALSCKCGKCNTDYS-DCIHEAIKTNYCTKPQKSYLVGFS 137
+ YFS K C Y+ CI I Y K +L+ FS
Sbjct: 628 LVGYFS-------KEKHCQQKYNVSCI--MILPQYQRKGYGRFLIDFS 666
>gi|52317202 olfactory receptor, family 2, subfamily L, member 2
[Homo sapiens]
Length = 312
Score = 29.3 bits (64), Expect = 1.1
Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 18/112 (16%)
Query: 9 MLFGLTCGQAMSFCIPTEYTMHIERRECAYCLT-------INT------TICAGYCMTRD 55
+L + + ++ C P Y + I +R C +T IN+ +C YC +R
Sbjct: 113 LLTSMAYDRYVAICFPLHYPIRISKRVCVMMITGSWMISSINSCAHTVYALCIPYCKSRA 172
Query: 56 INGKLFLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGK 107
IN F A+ CT TV + V P+ ++C G+
Sbjct: 173 IN-HFFCDVPAMLTLACTDTWVYESTVFLSSTIFLVLPF----TGIACSYGR 219
>gi|14917117 keratin 33A [Homo sapiens]
Length = 404
Score = 26.6 bits (57), Expect = 7.0
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 87 CPLHVAPYFSYPVALSCKCGKCNT 110
C P S P L +CG CNT
Sbjct: 378 CDKSTGPCISNPCGLRARCGPCNT 401
>gi|15451921 platelet derived growth factor D isoform 2 precursor
[Homo sapiens]
Length = 364
Score = 26.2 bits (56), Expect = 9.2
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 42 INTTICAGYCMTRDINGKLFLPKYALSQDVCTYRDFIYR---TVEIPGCPLHVAPYF--S 96
+ T ICA +C RD + ++ RD +YR T+++ G +P F S
Sbjct: 7 VYTLICANFCSCRDTSATPQSASIKALRNANLRRDDLYRRDETIQVKGNGYVQSPRFPNS 66
Query: 97 YP 98
YP
Sbjct: 67 YP 68
>gi|226442878 ADAMTS-like 5 [Homo sapiens]
Length = 471
Score = 26.2 bits (56), Expect = 9.2
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 15/98 (15%)
Query: 4 LFLMSMLFGLTCGQAMSFCIPTEYTMHIERRECAYCLTINTTICAGYCMTRDINGKLFLP 63
LFL ++L CG +S P E+T + C+ ++ + C+ LP
Sbjct: 18 LFLWALL---NCGLGVSAQGPGEWTPWVSWTRCSSSCGRGVSVRSRRCLR--------LP 66
Query: 64 KYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVAL 101
++ C YR ++P CP P+ AL
Sbjct: 67 ----GEEPCWGDSHEYRLCQLPDCPPGAVPFRDLQCAL 100
>gi|5031897 mab-21-like protein 1 [Homo sapiens]
Length = 359
Score = 26.2 bits (56), Expect = 9.2
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 34 RECAYCLTINTTICAGYCMTRDINGKLFLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAP 93
R+ + L + +GY R I + F A + D C+YRD + + L +
Sbjct: 106 RKRSMSLWVEFITASGYLSARKIRSR-FQTLVAQAVDKCSYRDVVKMVADTSEVKLRIRD 164
Query: 94 YFSYPVALSCKC 105
+ + + KC
Sbjct: 165 RYVVQITPAFKC 176
>gi|154937359 cysteine-rich PAK1 inhibitor [Homo sapiens]
Length = 446
Score = 26.2 bits (56), Expect = 9.2
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 82 VEIPGCPLHVAPYFSYPVALSCKCG------KCNTDYSDCIHEAIKTNYCTKP 128
VE P P H + P A +C CG C C H+A+ +C P
Sbjct: 359 VECP--PAHTRAHVECPPAHTCPCGVPACSHTCPCGVPACSHKALAWWFCRFP 409
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.329 0.140 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,518,079
Number of Sequences: 37866
Number of extensions: 229782
Number of successful extensions: 675
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 652
Number of HSP's gapped (non-prelim): 22
length of query: 138
length of database: 18,247,518
effective HSP length: 91
effective length of query: 47
effective length of database: 14,801,712
effective search space: 695680464
effective search space used: 695680464
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.