Search of human proteins with 224548932

Search of human proteins with 224548932

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|224548932 zinc finger RNA binding protein 2 isoform 2 [Homo
sapiens]
         (70 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|224548932 zinc finger RNA binding protein 2 isoform 2 [Homo s...   155   6e-39
gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo s...    46   7e-06
gi|4557595 forkhead box F2 [Homo sapiens]                              30   0.53 
gi|20127386 l-myc-1 proto-oncogene isoform 2 [Homo sapiens]            28   1.6  
gi|74315997 l-myc-1 proto-oncogene isoform 1 [Homo sapiens]            28   1.6  
gi|74315995 l-myc-1 proto-oncogene isoform 1 [Homo sapiens]            28   1.6  
gi|21361116 versican isoform 1 [Homo sapiens]                          28   1.6  
gi|239752864 PREDICTED: hypothetical protein [Homo sapiens]            28   2.0  
gi|239747416 PREDICTED: hypothetical protein XP_002346693 [Homo ...    28   2.0  
gi|163965366 nascent polypeptide-associated complex alpha subuni...    27   3.5  
gi|14192943 multiple EGF-like-domains 10 [Homo sapiens]                27   4.5  
gi|24308458 Lix1 homolog (mouse) like [Homo sapiens]                   27   4.5  
gi|54873602 hypothetical protein LOC220382 [Homo sapiens]              27   4.5  
gi|27552770 splA/ryanodine receptor domain and SOCS box containi...    27   4.5  
gi|239742747 PREDICTED: hypothetical protein XP_002342617 [Homo ...    26   5.9  
gi|122937335 F-box protein 46 [Homo sapiens]                           26   5.9  
gi|194272180 plexin B1 [Homo sapiens]                                  26   7.7  
gi|40254442 plexin B1 [Homo sapiens]                                   26   7.7  

>gi|224548932 zinc finger RNA binding protein 2 isoform 2 [Homo
          sapiens]
          Length = 70

 Score =  155 bits (392), Expect = 6e-39
 Identities = 70/70 (100%), Positives = 70/70 (100%)

Query: 1  MATSQYFDFAQGGGPQYSPEVETTPPALASGLPCALPWTVGCSGSDAVTALCPSLRGLAC 60
          MATSQYFDFAQGGGPQYSPEVETTPPALASGLPCALPWTVGCSGSDAVTALCPSLRGLAC
Sbjct: 1  MATSQYFDFAQGGGPQYSPEVETTPPALASGLPCALPWTVGCSGSDAVTALCPSLRGLAC 60

Query: 61 ICSILWDPAW 70
          ICSILWDPAW
Sbjct: 61 ICSILWDPAW 70


>gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo
          sapiens]
          Length = 939

 Score = 45.8 bits (107), Expect = 7e-06
 Identities = 20/25 (80%), Positives = 21/25 (84%)

Query: 1  MATSQYFDFAQGGGPQYSPEVETTP 25
          MATSQYFDFAQGGGPQYS +  T P
Sbjct: 1  MATSQYFDFAQGGGPQYSAQPPTLP 25


>gi|4557595 forkhead box F2 [Homo sapiens]
          Length = 444

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 4/32 (12%)

Query: 12  GGGPQYSPEVETTP----PALASGLPCALPWT 39
           GGG  Y P+  ++P    PA+AS + C  P+T
Sbjct: 303 GGGGDYGPDSSSSPVPSSPAMASAIECHSPYT 334


>gi|20127386 l-myc-1 proto-oncogene isoform 2 [Homo sapiens]
          Length = 206

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 15  PQYSPEVETTPPALASGLPCALPWTVGCSGSDA 47
           P  +P +E   PA A+  P   P T  CSGS++
Sbjct: 129 PDCTPSLEAGNPAPAAPCPLGEPKTQACSGSES 161


>gi|74315997 l-myc-1 proto-oncogene isoform 1 [Homo sapiens]
          Length = 364

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 15  PQYSPEVETTPPALASGLPCALPWTVGCSGSDA 47
           P  +P +E   PA A+  P   P T  CSGS++
Sbjct: 129 PDCTPSLEAGNPAPAAPCPLGEPKTQACSGSES 161


>gi|74315995 l-myc-1 proto-oncogene isoform 1 [Homo sapiens]
          Length = 364

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 15  PQYSPEVETTPPALASGLPCALPWTVGCSGSDA 47
           P  +P +E   PA A+  P   P T  CSGS++
Sbjct: 129 PDCTPSLEAGNPAPAAPCPLGEPKTQACSGSES 161


>gi|21361116 versican isoform 1 [Homo sapiens]
          Length = 3396

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 18  SPEVETTPPALASGLPCALPWTVGCSGSD 46
           S  +E+T P+ +S LP AL  TVG +G D
Sbjct: 812 SKPLESTEPSASSKLPPALLTTVGMNGKD 840


>gi|239752864 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 386

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 1   MATSQYFDFAQGGGPQYSPEVETTPPALASGLPCALP 37
           +A+SQY + A   GP  SP     PP+L+ G P A P
Sbjct: 335 LASSQYQNVATAWGPLNSP---GGPPSLSQGYPHAHP 368


>gi|239747416 PREDICTED: hypothetical protein XP_002346693 [Homo
           sapiens]
          Length = 386

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 1   MATSQYFDFAQGGGPQYSPEVETTPPALASGLPCALP 37
           +A+SQY + A   GP  SP     PP+L+ G P A P
Sbjct: 335 LASSQYQNVATAWGPLNSP---GGPPSLSQGYPHAHP 368


>gi|163965366 nascent polypeptide-associated complex alpha subunit
            isoform a [Homo sapiens]
          Length = 2078

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 11   QGGGPQYSPEVETTPPALA----SGLPCALPWTVGCSGSDAVTALCP 53
            +GG    SP+   TPPA+      G P A P+  G S   A T   P
Sbjct: 997  KGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSP 1043


>gi|14192943 multiple EGF-like-domains 10 [Homo sapiens]
          Length = 1140

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 32  LPCALPWTVGCSGSDAVTALCPSLRGLAC--ICS 63
           LPC       CS  D +    P  RG  C  ICS
Sbjct: 583 LPCYCKNGASCSPDDGICECAPGFRGTTCQRICS 616


>gi|24308458 Lix1 homolog (mouse) like [Homo sapiens]
          Length = 337

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 12 GGGPQYSPEVETTPPALASGLPCALPWTVGCSGSDAV 48
          G  P   P     PP L SG P  LP   G +GS AV
Sbjct: 41 GPPPAPPPPAPPPPPLLLSGAP-GLPLPPGAAGSPAV 76


>gi|54873602 hypothetical protein LOC220382 [Homo sapiens]
          Length = 426

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 13  GGPQYSPEVETTPPALASGLPCALPWTV-GCS 43
           G P+  P +   PPA+   L    PW+V GCS
Sbjct: 299 GPPELEPGLFEPPPAVVGNLLYPEPWSVPGCS 330


>gi|27552770 splA/ryanodine receptor domain and SOCS box
          containing 3 [Homo sapiens]
          Length = 355

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 19 PEVETTPPALASGLPCALPWTVGCSGSDAVTALCPSL----RGLACIC 62
          PE  T PP++ S +P        C+G  +  + C SL    RG  C C
Sbjct: 50 PEYSTLPPSIPSAVPVTGESFCDCAG-QSEASFCSSLHSAHRGRDCRC 96


>gi|239742747 PREDICTED: hypothetical protein XP_002342617 [Homo
           sapiens]
          Length = 283

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 7/55 (12%)

Query: 6   YFDFAQGGGPQYSPEVETT----PPALASGLPCALPWTVGCSGSDAVTALCPSLR 56
           ++ F + G P   P+V T+    P A A+  PC++     C G+ + + L P LR
Sbjct: 127 HYPFGRRGTP---PDVRTSNSGAPTASAARPPCSITTKNCCKGAWSASRLRPRLR 178


>gi|122937335 F-box protein 46 [Homo sapiens]
          Length = 603

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 12 GGG--PQYSP-EVETTPPALASGLPCALP 37
          GGG  P + P   E TPPALA+ +P + P
Sbjct: 41 GGGAEPDHGPAHSENTPPALATEVPASQP 69


>gi|194272180 plexin B1 [Homo sapiens]
          Length = 2135

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 13  GGPQYSPEVETTPPALASGLPCALPWTVGCSGSDAVTALCP 53
           GGP  SP   T P ALA+  P  LP   G   +   + + P
Sbjct: 688 GGP--SPSPPTAPKALATPAPDTLPVEPGAPSTATASDISP 726


>gi|40254442 plexin B1 [Homo sapiens]
          Length = 2135

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 13  GGPQYSPEVETTPPALASGLPCALPWTVGCSGSDAVTALCP 53
           GGP  SP   T P ALA+  P  LP   G   +   + + P
Sbjct: 688 GGP--SPSPPTAPKALATPAPDTLPVEPGAPSTATASDISP 726


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.135    0.478 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,426,512
Number of Sequences: 37866
Number of extensions: 141227
Number of successful extensions: 550
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 541
Number of HSP's gapped (non-prelim): 25
length of query: 70
length of database: 18,247,518
effective HSP length: 43
effective length of query: 27
effective length of database: 16,619,280
effective search space: 448720560
effective search space used: 448720560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.