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Search of human proteins with 224465202
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|224465202 synaptosomal-associated protein, 47kDa [Homo
sapiens]
(464 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|224465202 synaptosomal-associated protein, 47kDa [Homo sapiens] 927 0.0
gi|4759154 synaptosomal-associated protein 29 [Homo sapiens] 40 0.006
gi|18765731 synaptosomal-associated protein 23 isoform SNAP23B [... 36 0.085
gi|18765729 synaptosomal-associated protein 23 isoform SNAP23A [... 36 0.085
gi|18765735 synaptosomal-associated protein 25 isoform SNAP25B [... 34 0.25
gi|21361517 UBX domain protein 1 [Homo sapiens] 33 0.72
gi|18765733 synaptosomal-associated protein 25 isoform SNAP25A [... 31 2.1
gi|117938266 hypothetical protein LOC91828 [Homo sapiens] 31 2.1
gi|109150431 ring finger protein 31 [Homo sapiens] 31 2.7
gi|28872792 CDK5 regulatory subunit associated protein 3 [Homo s... 30 3.6
gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens] 30 4.6
gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens] 30 4.6
gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens] 30 4.6
gi|4759188 syntaxin 8 [Homo sapiens] 30 4.6
gi|34147522 chaperone, ABC1 activity of bc1 complex like precurs... 30 4.6
gi|118918409 transmembrane protein 69 [Homo sapiens] 30 4.6
gi|8923396 HAUS augmin-like complex, subunit 4 [Homo sapiens] 30 6.1
gi|209413766 zinc finger and BTB domain containing 43 [Homo sapi... 29 7.9
gi|7662100 zinc finger and BTB domain containing 43 [Homo sapiens] 29 7.9
>gi|224465202 synaptosomal-associated protein, 47kDa [Homo sapiens]
Length = 464
Score = 927 bits (2395), Expect = 0.0
Identities = 464/464 (100%), Positives = 464/464 (100%)
Query: 1 MRAARRGLHCAGAERPRRRGRLWDSSGVPQRQKRPGPWRTQTQEQMSRDVCIHTWPCTYY 60
MRAARRGLHCAGAERPRRRGRLWDSSGVPQRQKRPGPWRTQTQEQMSRDVCIHTWPCTYY
Sbjct: 1 MRAARRGLHCAGAERPRRRGRLWDSSGVPQRQKRPGPWRTQTQEQMSRDVCIHTWPCTYY 60
Query: 61 LEPKRRWVTGQLSLTSLSLRFMTDSTGEILVSFPLSSIVEIKKEASHFIFSSITILEKGH 120
LEPKRRWVTGQLSLTSLSLRFMTDSTGEILVSFPLSSIVEIKKEASHFIFSSITILEKGH
Sbjct: 61 LEPKRRWVTGQLSLTSLSLRFMTDSTGEILVSFPLSSIVEIKKEASHFIFSSITILEKGH 120
Query: 121 AKHWFSSLRPSRNVVFSIIEHFWRELLLSQPGAVADASVPRTRGEELTGLMAGSQKRLED 180
AKHWFSSLRPSRNVVFSIIEHFWRELLLSQPGAVADASVPRTRGEELTGLMAGSQKRLED
Sbjct: 121 AKHWFSSLRPSRNVVFSIIEHFWRELLLSQPGAVADASVPRTRGEELTGLMAGSQKRLED 180
Query: 181 TARVLHHQGQQLDSVMRGLDKMESDLEVADRLLTELESPAWWPFSSKLWKTPPETKPRED 240
TARVLHHQGQQLDSVMRGLDKMESDLEVADRLLTELESPAWWPFSSKLWKTPPETKPRED
Sbjct: 181 TARVLHHQGQQLDSVMRGLDKMESDLEVADRLLTELESPAWWPFSSKLWKTPPETKPRED 240
Query: 241 VSMTSCEPFGKEGILIKIPAVISHRTESHVKPGRLTVLVSGLEIHDSSSLLMHRFEREDV 300
VSMTSCEPFGKEGILIKIPAVISHRTESHVKPGRLTVLVSGLEIHDSSSLLMHRFEREDV
Sbjct: 241 VSMTSCEPFGKEGILIKIPAVISHRTESHVKPGRLTVLVSGLEIHDSSSLLMHRFEREDV 300
Query: 301 DDIKVHSPYEISIRQRFIGKPDMAYRLISAKMPEVIPILEVQFSKKMELLEDALVLRSAR 360
DDIKVHSPYEISIRQRFIGKPDMAYRLISAKMPEVIPILEVQFSKKMELLEDALVLRSAR
Sbjct: 301 DDIKVHSPYEISIRQRFIGKPDMAYRLISAKMPEVIPILEVQFSKKMELLEDALVLRSAR 360
Query: 361 TSSPAEKSCSVWHAASGLMGRTLHREPPAGDQEGTALHLQTSLPALSEADTQELTQILRR 420
TSSPAEKSCSVWHAASGLMGRTLHREPPAGDQEGTALHLQTSLPALSEADTQELTQILRR
Sbjct: 361 TSSPAEKSCSVWHAASGLMGRTLHREPPAGDQEGTALHLQTSLPALSEADTQELTQILRR 420
Query: 421 MKGLALEAESELERQDEALDGVAAAVDRATLTIDKHNRRMKRLT 464
MKGLALEAESELERQDEALDGVAAAVDRATLTIDKHNRRMKRLT
Sbjct: 421 MKGLALEAESELERQDEALDGVAAAVDRATLTIDKHNRRMKRLT 464
>gi|4759154 synaptosomal-associated protein 29 [Homo sapiens]
Length = 258
Score = 39.7 bits (91), Expect = 0.006
Identities = 18/56 (32%), Positives = 35/56 (62%)
Query: 408 EADTQELTQILRRMKGLALEAESELERQDEALDGVAAAVDRATLTIDKHNRRMKRL 463
+++ EL+ L R+K +AL ++E+E QD+ LD + VD+ + I R++++L
Sbjct: 203 DSNLDELSMGLGRLKDIALGMQTEIEEQDDILDRLTTKVDKLDVNIKSTERKVRQL 258
>gi|18765731 synaptosomal-associated protein 23 isoform SNAP23B
[Homo sapiens]
Length = 158
Score = 35.8 bits (81), Expect = 0.085
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 154 VADASVPRTRGEELTGLMAGSQKRLEDTARVLHHQGQQLDSVMRGLDKMESDLEVADRLL 213
+ D S+ TR + GL SQ T +L Q +QL+ + GLD++ D+ ++ L
Sbjct: 16 ITDESLESTR--RILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTL 73
Query: 214 TEL 216
TEL
Sbjct: 74 TEL 76
>gi|18765729 synaptosomal-associated protein 23 isoform SNAP23A
[Homo sapiens]
Length = 211
Score = 35.8 bits (81), Expect = 0.085
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 154 VADASVPRTRGEELTGLMAGSQKRLEDTARVLHHQGQQLDSVMRGLDKMESDLEVADRLL 213
+ D S+ TR + GL SQ T +L Q +QL+ + GLD++ D+ ++ L
Sbjct: 16 ITDESLESTR--RILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTL 73
Query: 214 TEL 216
TEL
Sbjct: 74 TEL 76
>gi|18765735 synaptosomal-associated protein 25 isoform SNAP25B
[Homo sapiens]
Length = 206
Score = 34.3 bits (77), Expect = 0.25
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 154 VADASVPRTRGEELTGLMAGSQKRLEDTARVLHHQGQQLDSVMRGLDKMESDLEVADRLL 213
+AD S+ TR + L+ S+ T +L QG+QL+ + G+D++ D++ A++ L
Sbjct: 21 LADESLESTR--RMLQLVEESKDAGIRTLVMLDEQGEQLERIEEGMDQINKDMKEAEKNL 78
Query: 214 TEL 216
T+L
Sbjct: 79 TDL 81
>gi|21361517 UBX domain protein 1 [Homo sapiens]
Length = 312
Score = 32.7 bits (73), Expect = 0.72
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 379 MGRTLHREPPAGDQ---EGTALHLQTSLPALSEADTQELTQILRRMKGLALEAESELERQ 435
+G L REP + +Q EG+ PALSE + QE T +RM L + + E E +
Sbjct: 56 LGHILGREPTSSEQGGLEGSGSAAGEGKPALSEEERQEQT---KRMLELVAQKQREREER 112
Query: 436 DE 437
+E
Sbjct: 113 EE 114
>gi|18765733 synaptosomal-associated protein 25 isoform SNAP25A
[Homo sapiens]
Length = 206
Score = 31.2 bits (69), Expect = 2.1
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 154 VADASVPRTRGEELTGLMAGSQKRLEDTARVLHHQGQQLDSVMRGLDKMESDLEVADRLL 213
+AD S+ TR + L+ S+ T +L QG+QLD V G++ + D++ A++ L
Sbjct: 21 LADESLESTR--RMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNL 78
Query: 214 TEL 216
+L
Sbjct: 79 KDL 81
>gi|117938266 hypothetical protein LOC91828 [Homo sapiens]
Length = 722
Score = 31.2 bits (69), Expect = 2.1
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 375 ASGLMGRTLHREPPAGDQEGTALHLQTSLPALSEADTQELTQILRRMKGLALEAESELER 434
A G + +EP A ++GT L L + A S A + LTQ+ + GL + L R
Sbjct: 26 AQGSRRTSSRKEPNAHRKDGTRLGLGSLRQAFSRASQRALTQVSKEDTGLFRRSSCSLFR 85
Query: 435 Q-DEAL-DGVAAAVDRAT 450
+AL DG A +AT
Sbjct: 86 SFRQALNDGPATGHSQAT 103
>gi|109150431 ring finger protein 31 [Homo sapiens]
Length = 1072
Score = 30.8 bits (68), Expect = 2.7
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Query: 178 LEDTARVLHHQGQQLDSVMRGLDKMESDLEV-------ADRLLTELESPAWWPFSSKLWK 230
+E+ R + Q+L S+ G E L+ R LTEL+ PF +LW
Sbjct: 569 VEECVRTRRRKVQELQSL--GFGPEEGSLQALFQHGGDVSRALTELQRQRLEPFRQRLWD 626
Query: 231 TPPETKPRED 240
+ PE P D
Sbjct: 627 SGPEPTPSWD 636
>gi|28872792 CDK5 regulatory subunit associated protein 3 [Homo
sapiens]
Length = 506
Score = 30.4 bits (67), Expect = 3.6
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 18/150 (12%)
Query: 330 AKMPEVIPILEV-----QFSKKMELLEDALVLRSARTSSPAEK-SCSVWHAASGLM-GRT 382
A+ P+ + +LE QF ++ LE L R+ S A+ S S + A ++ G+T
Sbjct: 335 ARGPDALTLLEYTETRNQFLDELMELEIFLAQRAVELSEEADVLSVSQFQLAPAILQGQT 394
Query: 383 LHREPPA----GDQEG--TALHLQ-----TSLPALSEADTQELTQILRRMKGLALEAESE 431
+ D G T+L LQ + P + T+ L Q L++ + LAL+ E
Sbjct: 395 KEKMVTMVSVLEDLIGKLTSLQLQHLFMILASPRYVDRVTEFLQQKLKQSQLLALKKELM 454
Query: 432 LERQDEALDGVAAAVDRATLTIDKHNRRMK 461
+++Q EAL+ AA + L ++K K
Sbjct: 455 VQKQQEALEEQAALEPKLDLLLEKTKELQK 484
>gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens]
Length = 2003
Score = 30.0 bits (66), Expect = 4.6
Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 19/155 (12%)
Query: 297 REDVDDIKVHSPYEISIRQRFIGKPDMAYRLISAKMPEVIPILEVQ---FSKKMELLEDA 353
++ + +++ H E RQ+ + + K E + +LE Q SK+ +LLED
Sbjct: 974 QQHIQELEAHLEAEEGARQK-LQLEKVTTEAKMKKFEEDLLLLEDQNSKLSKERKLLEDR 1032
Query: 354 LVLRSARTSSPAEKSCSVWHAASGLMGRTLHREPPAGDQEGTALHLQTSLPALSEADTQE 413
L S++ + EK L L E D E E QE
Sbjct: 1033 LAEFSSQAAEEEEK-------VKSLNKLRLKYEATIADMEDRLRK--------EEKGRQE 1077
Query: 414 LTQILRRMKGLALEAESELERQDEALDGVAAAVDR 448
L ++ RR+ G + E + ++ Q + + + A + R
Sbjct: 1078 LEKLKRRLDGESSELQEQMVEQQQRAEELRAQLGR 1112
>gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens]
Length = 1995
Score = 30.0 bits (66), Expect = 4.6
Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 19/155 (12%)
Query: 297 REDVDDIKVHSPYEISIRQRFIGKPDMAYRLISAKMPEVIPILEVQ---FSKKMELLEDA 353
++ + +++ H E RQ+ + + K E + +LE Q SK+ +LLED
Sbjct: 966 QQHIQELEAHLEAEEGARQK-LQLEKVTTEAKMKKFEEDLLLLEDQNSKLSKERKLLEDR 1024
Query: 354 LVLRSARTSSPAEKSCSVWHAASGLMGRTLHREPPAGDQEGTALHLQTSLPALSEADTQE 413
L S++ + EK L L E D E E QE
Sbjct: 1025 LAEFSSQAAEEEEK-------VKSLNKLRLKYEATIADMEDRLRK--------EEKGRQE 1069
Query: 414 LTQILRRMKGLALEAESELERQDEALDGVAAAVDR 448
L ++ RR+ G + E + ++ Q + + + A + R
Sbjct: 1070 LEKLKRRLDGESSELQEQMVEQQQRAEELRAQLGR 1104
>gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens]
Length = 2036
Score = 30.0 bits (66), Expect = 4.6
Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 19/155 (12%)
Query: 297 REDVDDIKVHSPYEISIRQRFIGKPDMAYRLISAKMPEVIPILEVQ---FSKKMELLEDA 353
++ + +++ H E RQ+ + + K E + +LE Q SK+ +LLED
Sbjct: 1007 QQHIQELEAHLEAEEGARQK-LQLEKVTTEAKMKKFEEDLLLLEDQNSKLSKERKLLEDR 1065
Query: 354 LVLRSARTSSPAEKSCSVWHAASGLMGRTLHREPPAGDQEGTALHLQTSLPALSEADTQE 413
L S++ + EK L L E D E E QE
Sbjct: 1066 LAEFSSQAAEEEEK-------VKSLNKLRLKYEATIADMEDRLRK--------EEKGRQE 1110
Query: 414 LTQILRRMKGLALEAESELERQDEALDGVAAAVDR 448
L ++ RR+ G + E + ++ Q + + + A + R
Sbjct: 1111 LEKLKRRLDGESSELQEQMVEQQQRAEELRAQLGR 1145
>gi|4759188 syntaxin 8 [Homo sapiens]
Length = 236
Score = 30.0 bits (66), Expect = 4.6
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 408 EADTQELTQILRRMKGLALEAESELERQDEALDGVAAAVDRATLTIDKHNRRM 460
+A L+ I+ R K + E +EL+ Q+E +D +A V+ + RR+
Sbjct: 152 DAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRNETRRV 204
>gi|34147522 chaperone, ABC1 activity of bc1 complex like precursor
[Homo sapiens]
Length = 647
Score = 30.0 bits (66), Expect = 4.6
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 381 RTLHREPPAGDQEGTALHLQTSLPALSEADTQELTQILRRMKGLALEAESELERQDEA 438
++L E P+G + + S P LSEA+ + + + L +++G AL+ L QD+A
Sbjct: 235 KSLRSEDPSGKKA-----VLGSSPFLSEANAERIVRTLCKVRGAALKLGQMLSIQDDA 287
>gi|118918409 transmembrane protein 69 [Homo sapiens]
Length = 247
Score = 30.0 bits (66), Expect = 4.6
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 35 PGPWRTQT-QEQMSRDVCIHTWPCTYYLEPKRRWVTGQLSLTSLSLRFMTDS 85
P PW + + MS+ C HT PC++ K++ L+ S ++ ++TDS
Sbjct: 46 PRPWLSSSFPAYMSKTQCYHTSPCSF----KKQQKQALLARPSSTITYLTDS 93
>gi|8923396 HAUS augmin-like complex, subunit 4 [Homo sapiens]
Length = 363
Score = 29.6 bits (65), Expect = 6.1
Identities = 20/72 (27%), Positives = 33/72 (45%)
Query: 363 SPAEKSCSVWHAASGLMGRTLHREPPAGDQEGTALHLQTSLPALSEADTQELTQILRRMK 422
S K+ VW A L+G + Q+ L L+ A S+ + LT + R ++
Sbjct: 191 SETVKAAKVWKLAEVLVGEQQQCQDAKSQQKEQMLLLEKKSAAYSQVLLRCLTLLQRLLQ 250
Query: 423 GLALEAESELER 434
L+ +SEL+R
Sbjct: 251 EHRLKTQSELDR 262
>gi|209413766 zinc finger and BTB domain containing 43 [Homo
sapiens]
Length = 467
Score = 29.3 bits (64), Expect = 7.9
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 259 PAVISHRTESHVKPGRLTVLVSGLEIH 285
P++++H+ HVKP RL G+++H
Sbjct: 235 PSIMAHKRWIHVKPERLEQACEGMDVH 261
>gi|7662100 zinc finger and BTB domain containing 43 [Homo sapiens]
Length = 467
Score = 29.3 bits (64), Expect = 7.9
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 259 PAVISHRTESHVKPGRLTVLVSGLEIH 285
P++++H+ HVKP RL G+++H
Sbjct: 235 PSIMAHKRWIHVKPERLEQACEGMDVH 261
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,777,193
Number of Sequences: 37866
Number of extensions: 806229
Number of successful extensions: 2694
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2674
Number of HSP's gapped (non-prelim): 27
length of query: 464
length of database: 18,247,518
effective HSP length: 106
effective length of query: 358
effective length of database: 14,233,722
effective search space: 5095672476
effective search space used: 5095672476
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.