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Search of human proteins with 224451040
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|224451040 Yip1 interacting factor homolog B isoform 7 [Homo
sapiens]
(291 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|224451040 Yip1 interacting factor homolog B isoform 7 [Homo s... 589 e-168
gi|89191850 Yip1 interacting factor homolog B isoform 4 [Homo sa... 523 e-149
gi|89191848 Yip1 interacting factor homolog B isoform 5 [Homo sa... 518 e-147
gi|89191845 Yip1 interacting factor homolog B isoform 3 [Homo sa... 490 e-139
gi|224451034 Yip1 interacting factor homolog B isoform 6 [Homo s... 489 e-139
gi|224451038 Yip1 interacting factor homolog B isoform 2 [Homo s... 468 e-132
gi|24308364 Yip1 interacting factor homolog B isoform 2 [Homo sa... 468 e-132
gi|170932464 Yip1 interacting factor homolog [Homo sapiens] 275 3e-74
gi|148664226 plakophilin 2 isoform 2b [Homo sapiens] 53 3e-07
gi|116256455 zinc finger protein 429 [Homo sapiens] 50 2e-06
gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens] 49 5e-06
gi|59859882 baculoviral IAP repeat-containing protein 5 isoform ... 46 4e-05
gi|148277022 selenoprotein P isoform 2 [Homo sapiens] 42 8e-04
gi|169204982 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|169205503 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|169204452 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|239756590 PREDICTED: hypothetical protein XP_002344942 [Homo ... 37 0.016
gi|239751084 PREDICTED: hypothetical protein XP_002347710 [Homo ... 37 0.016
gi|239745573 PREDICTED: hypothetical protein XP_002344133 [Homo ... 37 0.016
gi|11038659 ADAM metallopeptidase with thrombospondin type 1 mot... 37 0.027
gi|144953913 zinc finger protein 714 [Homo sapiens] 37 0.027
gi|4759046 RNA polymerase I subunit isoform 2 [Homo sapiens] 36 0.046
gi|20336212 guanidinoacetate N-methyltransferase isoform b [Homo... 34 0.17
gi|169210256 PREDICTED: hypothetical protein [Homo sapiens] 33 0.29
gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo sa... 32 0.50
gi|239747614 PREDICTED: similar to Putative uncharacterized prot... 31 1.5
gi|153281158 dual specificity phosphatase 8 [Homo sapiens] 31 1.5
gi|148727259 solute carrier family 9 (sodium/hydrogen exchanger)... 31 1.5
gi|239756579 PREDICTED: hypothetical protein [Homo sapiens] 30 1.9
gi|169165598 PREDICTED: hypothetical protein [Homo sapiens] 30 1.9
>gi|224451040 Yip1 interacting factor homolog B isoform 7 [Homo
sapiens]
Length = 291
Score = 589 bits (1518), Expect = e-168
Identities = 291/291 (100%), Positives = 291/291 (100%)
Query: 1 MHPAGLAAAAAGTPRLPSKRRIPVSQPGMADPHQLFDDTSSAQSRGYGAQRAPGGLSYPA 60
MHPAGLAAAAAGTPRLPSKRRIPVSQPGMADPHQLFDDTSSAQSRGYGAQRAPGGLSYPA
Sbjct: 1 MHPAGLAAAAAGTPRLPSKRRIPVSQPGMADPHQLFDDTSSAQSRGYGAQRAPGGLSYPA 60
Query: 61 ASPTPHAAFLADPVSNMAMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRK 120
ASPTPHAAFLADPVSNMAMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRK
Sbjct: 61 ASPTPHAAFLADPVSNMAMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRK 120
Query: 121 LGLLFFPYLHQDWEVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRFSP 180
LGLLFFPYLHQDWEVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRFSP
Sbjct: 121 LGLLFFPYLHQDWEVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRFSP 180
Query: 181 DLLGLQASSALAWLTLEVLAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLF 240
DLLGLQASSALAWLTLEVLAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLF
Sbjct: 181 DLLGLQASSALAWLTLEVLAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLF 240
Query: 241 GKIGYYLVLGWCCVAIFVFMFPLLPGAVAHACNPSTLGGRGGRITRSGRCG 291
GKIGYYLVLGWCCVAIFVFMFPLLPGAVAHACNPSTLGGRGGRITRSGRCG
Sbjct: 241 GKIGYYLVLGWCCVAIFVFMFPLLPGAVAHACNPSTLGGRGGRITRSGRCG 291
>gi|89191850 Yip1 interacting factor homolog B isoform 4 [Homo
sapiens]
Length = 311
Score = 523 bits (1348), Expect = e-149
Identities = 261/264 (98%), Positives = 261/264 (98%)
Query: 1 MHPAGLAAAAAGTPRLPSKRRIPVSQPGMADPHQLFDDTSSAQSRGYGAQRAPGGLSYPA 60
MHPAGLAAAAAGTPRLPSKRRIPVSQPGMADPHQLFDDTSSAQSRGYGAQRAPGGLSYPA
Sbjct: 1 MHPAGLAAAAAGTPRLPSKRRIPVSQPGMADPHQLFDDTSSAQSRGYGAQRAPGGLSYPA 60
Query: 61 ASPTPHAAFLADPVSNMAMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRK 120
ASPTPHAAFLADPVSNMAMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRK
Sbjct: 61 ASPTPHAAFLADPVSNMAMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRK 120
Query: 121 LGLLFFPYLHQDWEVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRFSP 180
LGLLFFPYLHQDWEVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRFSP
Sbjct: 121 LGLLFFPYLHQDWEVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRFSP 180
Query: 181 DLLGLQASSALAWLTLEVLAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLF 240
DLLGLQASSALAWLTLEVLAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLF
Sbjct: 181 DLLGLQASSALAWLTLEVLAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLF 240
Query: 241 GKIGYYLVLGWCCVAIFVFMFPLL 264
GKIGYYLVLGWCCVAIFVFM L
Sbjct: 241 GKIGYYLVLGWCCVAIFVFMIRTL 264
>gi|89191848 Yip1 interacting factor homolog B isoform 5 [Homo
sapiens]
Length = 314
Score = 518 bits (1334), Expect = e-147
Identities = 261/267 (97%), Positives = 261/267 (97%), Gaps = 3/267 (1%)
Query: 1 MHPAGLAAAAAGTPRL---PSKRRIPVSQPGMADPHQLFDDTSSAQSRGYGAQRAPGGLS 57
MHPAGLAAAAAGTPRL PSKRRIPVSQPGMADPHQLFDDTSSAQSRGYGAQRAPGGLS
Sbjct: 1 MHPAGLAAAAAGTPRLRKWPSKRRIPVSQPGMADPHQLFDDTSSAQSRGYGAQRAPGGLS 60
Query: 58 YPAASPTPHAAFLADPVSNMAMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYV 117
YPAASPTPHAAFLADPVSNMAMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYV
Sbjct: 61 YPAASPTPHAAFLADPVSNMAMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYV 120
Query: 118 GRKLGLLFFPYLHQDWEVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDR 177
GRKLGLLFFPYLHQDWEVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDR
Sbjct: 121 GRKLGLLFFPYLHQDWEVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDR 180
Query: 178 FSPDLLGLQASSALAWLTLEVLAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLMG 237
FSPDLLGLQASSALAWLTLEVLAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLMG
Sbjct: 181 FSPDLLGLQASSALAWLTLEVLAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLMG 240
Query: 238 LLFGKIGYYLVLGWCCVAIFVFMFPLL 264
LLFGKIGYYLVLGWCCVAIFVFM L
Sbjct: 241 LLFGKIGYYLVLGWCCVAIFVFMIRTL 267
>gi|89191845 Yip1 interacting factor homolog B isoform 3 [Homo
sapiens]
Length = 299
Score = 490 bits (1262), Expect = e-139
Identities = 245/251 (97%), Positives = 245/251 (97%)
Query: 14 PRLPSKRRIPVSQPGMADPHQLFDDTSSAQSRGYGAQRAPGGLSYPAASPTPHAAFLADP 73
P SKRRIPVSQPGMADPHQLFDDTSSAQSRGYGAQRAPGGLSYPAASPTPHAAFLADP
Sbjct: 2 PGSASKRRIPVSQPGMADPHQLFDDTSSAQSRGYGAQRAPGGLSYPAASPTPHAAFLADP 61
Query: 74 VSNMAMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYLHQDW 133
VSNMAMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYLHQDW
Sbjct: 62 VSNMAMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYLHQDW 121
Query: 134 EVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASSALAW 193
EVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASSALAW
Sbjct: 122 EVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASSALAW 181
Query: 194 LTLEVLAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVLGWCC 253
LTLEVLAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVLGWCC
Sbjct: 182 LTLEVLAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVLGWCC 241
Query: 254 VAIFVFMFPLL 264
VAIFVFM L
Sbjct: 242 VAIFVFMIRTL 252
>gi|224451034 Yip1 interacting factor homolog B isoform 6 [Homo
sapiens]
Length = 297
Score = 489 bits (1260), Expect = e-139
Identities = 244/247 (98%), Positives = 244/247 (98%)
Query: 18 SKRRIPVSQPGMADPHQLFDDTSSAQSRGYGAQRAPGGLSYPAASPTPHAAFLADPVSNM 77
SKRRIPVSQPGMADPHQLFDDTSSAQSRGYGAQRAPGGLSYPAASPTPHAAFLADPVSNM
Sbjct: 4 SKRRIPVSQPGMADPHQLFDDTSSAQSRGYGAQRAPGGLSYPAASPTPHAAFLADPVSNM 63
Query: 78 AMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQY 137
AMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQY
Sbjct: 64 AMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQY 123
Query: 138 QQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASSALAWLTLE 197
QQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASSALAWLTLE
Sbjct: 124 QQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASSALAWLTLE 183
Query: 198 VLAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVLGWCCVAIF 257
VLAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVLGWCCVAIF
Sbjct: 184 VLAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVLGWCCVAIF 243
Query: 258 VFMFPLL 264
VFM L
Sbjct: 244 VFMIRTL 250
>gi|224451038 Yip1 interacting factor homolog B isoform 2 [Homo
sapiens]
Length = 283
Score = 468 bits (1204), Expect = e-132
Identities = 233/236 (98%), Positives = 233/236 (98%)
Query: 29 MADPHQLFDDTSSAQSRGYGAQRAPGGLSYPAASPTPHAAFLADPVSNMAMAYGSSLAAQ 88
MADPHQLFDDTSSAQSRGYGAQRAPGGLSYPAASPTPHAAFLADPVSNMAMAYGSSLAAQ
Sbjct: 1 MADPHQLFDDTSSAQSRGYGAQRAPGGLSYPAASPTPHAAFLADPVSNMAMAYGSSLAAQ 60
Query: 89 GKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQYQQDTPVAPRFD 148
GKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQYQQDTPVAPRFD
Sbjct: 61 GKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQYQQDTPVAPRFD 120
Query: 149 VNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASSALAWLTLEVLAILLSLYLV 208
VNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASSALAWLTLEVLAILLSLYLV
Sbjct: 121 VNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASSALAWLTLEVLAILLSLYLV 180
Query: 209 TVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVLGWCCVAIFVFMFPLL 264
TVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVLGWCCVAIFVFM L
Sbjct: 181 TVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVLGWCCVAIFVFMIRTL 236
>gi|24308364 Yip1 interacting factor homolog B isoform 2 [Homo
sapiens]
Length = 283
Score = 468 bits (1204), Expect = e-132
Identities = 233/236 (98%), Positives = 233/236 (98%)
Query: 29 MADPHQLFDDTSSAQSRGYGAQRAPGGLSYPAASPTPHAAFLADPVSNMAMAYGSSLAAQ 88
MADPHQLFDDTSSAQSRGYGAQRAPGGLSYPAASPTPHAAFLADPVSNMAMAYGSSLAAQ
Sbjct: 1 MADPHQLFDDTSSAQSRGYGAQRAPGGLSYPAASPTPHAAFLADPVSNMAMAYGSSLAAQ 60
Query: 89 GKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQYQQDTPVAPRFD 148
GKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQYQQDTPVAPRFD
Sbjct: 61 GKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQYQQDTPVAPRFD 120
Query: 149 VNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASSALAWLTLEVLAILLSLYLV 208
VNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASSALAWLTLEVLAILLSLYLV
Sbjct: 121 VNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASSALAWLTLEVLAILLSLYLV 180
Query: 209 TVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVLGWCCVAIFVFMFPLL 264
TVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVLGWCCVAIFVFM L
Sbjct: 181 TVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVLGWCCVAIFVFMIRTL 236
>gi|170932464 Yip1 interacting factor homolog [Homo sapiens]
Length = 293
Score = 275 bits (703), Expect = 3e-74
Identities = 144/252 (57%), Positives = 180/252 (71%), Gaps = 14/252 (5%)
Query: 31 DPHQLFDDTSSAQSRGYGAQRAPGGLSYPAASPTPHAA---FLADPVSNMAMAYGSSLAA 87
DP LFDDTS GY +Q PGG YPA + L DP++N+AMAYGSS+A+
Sbjct: 21 DPPPLFDDTSG----GYSSQ--PGG--YPATGADVAFSVNHLLGDPMANVAMAYGSSIAS 72
Query: 88 QGKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQYQQDTPVAPRF 147
GK++V K + RF+ ++KLKY+FAVDT YV +KLGLL FPY HQ+WEVQY +D P+ PR
Sbjct: 73 HGKDMVHKELHRFVSVSKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEVQYSRDAPLPPRQ 132
Query: 148 DVNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASSALAWLTLEVLAILLSLYL 207
D+NAPDLYIP MAFITYVL+AG+ALG Q RFSP++LGL AS+AL W+ +EVLA+LL LYL
Sbjct: 133 DLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCASTALVWVVMEVLALLLGLYL 192
Query: 208 VTVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVLGWCCVAIFVFMFPLLPGA 267
TV +DL+T L+A+ GYKYVGMI VL GLLFG GYY+ L W A+ F+ L A
Sbjct: 193 ATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSALMYFIVRSLRTA 252
Query: 268 VAHACNPSTLGG 279
A P ++GG
Sbjct: 253 ---ALGPDSMGG 261
>gi|148664226 plakophilin 2 isoform 2b [Homo sapiens]
Length = 881
Score = 53.1 bits (126), Expect = 3e-07
Identities = 23/24 (95%), Positives = 24/24 (100%)
Query: 265 PGAVAHACNPSTLGGRGGRITRSG 288
PGAVAHACNPSTLGG+GGRITRSG
Sbjct: 472 PGAVAHACNPSTLGGQGGRITRSG 495
>gi|116256455 zinc finger protein 429 [Homo sapiens]
Length = 674
Score = 50.4 bits (119), Expect = 2e-06
Identities = 22/23 (95%), Positives = 22/23 (95%)
Query: 266 GAVAHACNPSTLGGRGGRITRSG 288
G VAHACNPSTLGGRGGRITRSG
Sbjct: 646 GVVAHACNPSTLGGRGGRITRSG 668
>gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens]
Length = 374
Score = 48.9 bits (115), Expect = 5e-06
Identities = 22/23 (95%), Positives = 22/23 (95%)
Query: 266 GAVAHACNPSTLGGRGGRITRSG 288
GAVAHACNPSTLGGRGG ITRSG
Sbjct: 346 GAVAHACNPSTLGGRGGWITRSG 368
>gi|59859882 baculoviral IAP repeat-containing protein 5 isoform 3
[Homo sapiens]
Length = 165
Score = 45.8 bits (107), Expect = 4e-05
Identities = 20/25 (80%), Positives = 22/25 (88%)
Query: 262 PLLPGAVAHACNPSTLGGRGGRITR 286
P+ PG VA+ACN STLGGRGGRITR
Sbjct: 73 PIGPGTVAYACNTSTLGGRGGRITR 97
>gi|148277022 selenoprotein P isoform 2 [Homo sapiens]
Length = 411
Score = 41.6 bits (96), Expect = 8e-04
Identities = 18/21 (85%), Positives = 20/21 (95%)
Query: 267 AVAHACNPSTLGGRGGRITRS 287
AVAHACNPSTLGG+G RITR+
Sbjct: 7 AVAHACNPSTLGGQGRRITRT 27
>gi|169204982 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 40.0 bits (92), Expect = 0.002
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 265 PGAVAHACNPSTLGGRGGRITRSGRC 290
P V H CNPSTLGGRGG+I C
Sbjct: 79 PSVVPHTCNPSTLGGRGGQIPSGQEC 104
>gi|169205503 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 40.0 bits (92), Expect = 0.002
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 265 PGAVAHACNPSTLGGRGGRITRSGRC 290
P V H CNPSTLGGRGG+I C
Sbjct: 79 PSVVPHTCNPSTLGGRGGQIPSGQEC 104
>gi|169204452 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 40.0 bits (92), Expect = 0.002
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 265 PGAVAHACNPSTLGGRGGRITRSGRC 290
P V H CNPSTLGGRGG+I C
Sbjct: 79 PSVVPHTCNPSTLGGRGGQIPSGQEC 104
>gi|239756590 PREDICTED: hypothetical protein XP_002344942 [Homo
sapiens]
Length = 120
Score = 37.4 bits (85), Expect = 0.016
Identities = 17/21 (80%), Positives = 17/21 (80%)
Query: 266 GAVAHACNPSTLGGRGGRITR 286
G VAH NPSTLGGRGG ITR
Sbjct: 83 GPVAHTYNPSTLGGRGGWITR 103
>gi|239751084 PREDICTED: hypothetical protein XP_002347710 [Homo
sapiens]
Length = 120
Score = 37.4 bits (85), Expect = 0.016
Identities = 17/21 (80%), Positives = 17/21 (80%)
Query: 266 GAVAHACNPSTLGGRGGRITR 286
G VAH NPSTLGGRGG ITR
Sbjct: 83 GPVAHTYNPSTLGGRGGWITR 103
>gi|239745573 PREDICTED: hypothetical protein XP_002344133 [Homo
sapiens]
Length = 120
Score = 37.4 bits (85), Expect = 0.016
Identities = 17/21 (80%), Positives = 17/21 (80%)
Query: 266 GAVAHACNPSTLGGRGGRITR 286
G VAH NPSTLGGRGG ITR
Sbjct: 83 GPVAHTYNPSTLGGRGGWITR 103
>gi|11038659 ADAM metallopeptidase with thrombospondin type 1 motif,
2 isoform 2 [Homo sapiens]
Length = 566
Score = 36.6 bits (83), Expect = 0.027
Identities = 15/17 (88%), Positives = 16/17 (94%)
Query: 265 PGAVAHACNPSTLGGRG 281
PGAVAHAC PSTLGG+G
Sbjct: 546 PGAVAHACYPSTLGGQG 562
>gi|144953913 zinc finger protein 714 [Homo sapiens]
Length = 555
Score = 36.6 bits (83), Expect = 0.027
Identities = 16/23 (69%), Positives = 18/23 (78%)
Query: 266 GAVAHACNPSTLGGRGGRITRSG 288
G VAHACNP+TL G G +I RSG
Sbjct: 505 GMVAHACNPNTLRGLGEQIARSG 527
>gi|4759046 RNA polymerase I subunit isoform 2 [Homo sapiens]
Length = 342
Score = 35.8 bits (81), Expect = 0.046
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 264 LPGAVAHACNPSTLGGRGGRITRS 287
L AVAH CNPSTLGG+G IT S
Sbjct: 312 LLAAVAHTCNPSTLGGQGEWITGS 335
>gi|20336212 guanidinoacetate N-methyltransferase isoform b [Homo
sapiens]
Length = 269
Score = 33.9 bits (76), Expect = 0.17
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 264 LPGAVAHACNPSTLGGRGGRI 284
LPGAVA NPST+ GRGG+I
Sbjct: 248 LPGAVAQVYNPSTVEGRGGQI 268
>gi|169210256 PREDICTED: hypothetical protein [Homo sapiens]
Length = 447
Score = 33.1 bits (74), Expect = 0.29
Identities = 25/81 (30%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 4 AGLAAAAAGTPRLPSKRRIPVSQPGMADPHQLFDDTSSAQSRGYG---------AQRAPG 54
AG+ + A G P P + R P S P +P Q S G G AQ A G
Sbjct: 287 AGVGSGAPGEPAEPGRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARG 346
Query: 55 GLSYPAASPTPHAAFLADPVS 75
P P+ A A P S
Sbjct: 347 SWPSPRCLPSDGGAREAPPTS 367
>gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo
sapiens]
Length = 601
Score = 32.3 bits (72), Expect = 0.50
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 7 AAAAAGTPRLPSKRRIPVSQPGM-ADPHQLFDDTSSAQSRGYGAQRAPGGLSYPAA---S 62
AAA A +P P P + P A P Q S++ G G++R+ GG P A S
Sbjct: 92 AAATASSPSTPDPASAPSTTPASPATPAQPSTSGSASSDAGSGSRRSSGGGPSPGAGEGS 151
Query: 63 PTPHAAFLA 71
P+ A+ L+
Sbjct: 152 PSATASILS 160
>gi|239747614 PREDICTED: similar to Putative uncharacterized protein
FLJ44672 [Homo sapiens]
Length = 259
Score = 30.8 bits (68), Expect = 1.5
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 5 GLAAAAAGT--PRLPSKRRIPVSQPGMADPHQLFDDTSSAQSRGYGAQRAPGGLSYPAAS 62
GL AA+AG P++ + + Q G+ P+ + S GA+ LS P++S
Sbjct: 140 GLPAASAGPSHPQIGLELGLEEQQVGLPGPNSVLSAASP------GAKLPRVSLSRPSSS 193
Query: 63 PTPHAAFLADPVSNMAMAY 81
P A+F A P S ++ A+
Sbjct: 194 CLPVASFXAQPSSWLSAAF 212
>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
Length = 625
Score = 30.8 bits (68), Expect = 1.5
Identities = 35/112 (31%), Positives = 44/112 (39%), Gaps = 20/112 (17%)
Query: 6 LAAAAAGTPRLPSKRRIPVSQPGMADP-HQLFDDTSSAQSRGYGAQRAPGGLS---YPAA 61
L AA G P PS P P P +L TS + + G A R GGLS P A
Sbjct: 302 LLAALQGDPGTPSGTPEPPPSPAAGAPLPRLPPPTSESAATGNAAAR-EGGLSAGGEPPA 360
Query: 62 SPTPHAAFLADPVSNMAMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVD 113
PTP A +S QG + + DR +LK F++D
Sbjct: 361 PPTPPA---------------TSALQQGLRGLHLSSDRLQDTNRLKRSFSLD 397
>gi|148727259 solute carrier family 9 (sodium/hydrogen exchanger),
member 4 [Homo sapiens]
Length = 798
Score = 30.8 bits (68), Expect = 1.5
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 167 VAGLALGTQDRFSPDLLGLQASSALA--WLTLEVLAILLSLYLVTVNTDLTTIDLVAFLG 224
VA LA+ + R + L + AL +T+ + +L++ + D+ T+D++A
Sbjct: 209 VAVLAVFEEARVNEQLYMMIFGEALLNDGITVVLYNMLIAFTKMHKFEDIETVDILAGCA 268
Query: 225 YKYVGMIGGVLMGLLFGKIGYYLVLGWCCVA----IFVFMFPLL 264
V +GGVL G++FG I ++ ++ + VFMF L
Sbjct: 269 RFIVVGLGGVLFGIVFGFISAFITRFTQNISAIEPLIVFMFSYL 312
>gi|239756579 PREDICTED: hypothetical protein [Homo sapiens]
Length = 210
Score = 30.4 bits (67), Expect = 1.9
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 4 AGLAAAAAGTPRLPSKRRIPVSQPGMADPHQLFDDTSSAQSRGYGAQRAPGGLS 57
AG G P PS RR + QPG H++ SS S G + R PGGL+
Sbjct: 79 AGWQGGPPGYPASPSSRRASIPQPG----HRM---QSSRASPGCCSCRYPGGLA 125
>gi|169165598 PREDICTED: hypothetical protein [Homo sapiens]
Length = 210
Score = 30.4 bits (67), Expect = 1.9
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 4 AGLAAAAAGTPRLPSKRRIPVSQPGMADPHQLFDDTSSAQSRGYGAQRAPGGLS 57
AG G P PS RR + QPG H++ SS S G + R PGGL+
Sbjct: 79 AGWQGGPPGYPASPSSRRASIPQPG----HRM---QSSRASPGCCSCRYPGGLA 125
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.141 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,081,102
Number of Sequences: 37866
Number of extensions: 501723
Number of successful extensions: 2337
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 2294
Number of HSP's gapped (non-prelim): 75
length of query: 291
length of database: 18,247,518
effective HSP length: 101
effective length of query: 190
effective length of database: 14,423,052
effective search space: 2740379880
effective search space used: 2740379880
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.