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Search of human proteins with 224028271
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|224028271 choroideremia isoform b [Homo sapiens]
(110 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|224028271 choroideremia isoform b [Homo sapiens] 222 4e-59
gi|9966761 choroideremia isoform a [Homo sapiens] 213 3e-56
gi|53832014 choroideremia-like Rab escort protein 2 [Homo sapiens] 173 3e-44
gi|169646441 GDP dissociation inhibitor 2 isoform 2 [Homo sapiens] 52 1e-07
gi|6598323 GDP dissociation inhibitor 2 isoform 1 [Homo sapiens] 52 1e-07
gi|4503971 GDP dissociation inhibitor 1 [Homo sapiens] 51 2e-07
gi|203098013 all-trans-13,14-dihydroretinol saturase [Homo sapiens] 38 0.002
gi|239754799 PREDICTED: similar to hCG1797215 [Homo sapiens] 30 0.42
gi|239749323 PREDICTED: similar to hCG1797215 [Homo sapiens] 30 0.42
gi|239743413 PREDICTED: hypothetical protein XP_002342849 [Homo ... 30 0.42
gi|239509120 PREDICTED: similar to hCG1797215 [Homo sapiens] 30 0.42
gi|62865635 squalene epoxidase [Homo sapiens] 29 0.93
gi|226246608 RNA polymerase II associated protein 2 [Homo sapiens] 28 1.6
gi|117414154 sodium channel associated protein 2 isoform b [Homo... 28 2.1
gi|117414162 sodium channel associated protein 2 isoform a [Homo... 28 2.1
gi|151301096 trimethylguanosine synthase homolog [Homo sapiens] 27 2.7
gi|5453894 catalytic phosphatidylinositol 3-kinase beta [Homo sa... 27 3.5
gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens] 27 3.5
gi|50355990 MORN repeat containing 3 [Homo sapiens] 27 3.5
gi|183227703 mitochondrial translation optimization 1 homolog is... 27 4.6
gi|19882217 mitochondrial translation optimization 1 homolog iso... 27 4.6
gi|74024895 mitochondrial translation optimization 1 homolog iso... 27 4.6
gi|4557735 monoamine oxidase A [Homo sapiens] 26 6.0
gi|33636719 translocase of inner mitochondrial membrane 44 [Homo... 26 6.0
>gi|224028271 choroideremia isoform b [Homo sapiens]
Length = 110
Score = 222 bits (566), Expect = 4e-59
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MADTLPSEFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFSFSGLLSWLK 60
MADTLPSEFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFSFSGLLSWLK
Sbjct: 1 MADTLPSEFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFSFSGLLSWLK 60
Query: 61 EYQENSDIVSDSPVWQDQILENEEAIALSRKDKTIQHVEVFCYARSTLLL 110
EYQENSDIVSDSPVWQDQILENEEAIALSRKDKTIQHVEVFCYARSTLLL
Sbjct: 61 EYQENSDIVSDSPVWQDQILENEEAIALSRKDKTIQHVEVFCYARSTLLL 110
>gi|9966761 choroideremia isoform a [Homo sapiens]
Length = 653
Score = 213 bits (542), Expect = 3e-56
Identities = 105/108 (97%), Positives = 105/108 (97%)
Query: 1 MADTLPSEFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFSFSGLLSWLK 60
MADTLPSEFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFSFSGLLSWLK
Sbjct: 1 MADTLPSEFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFSFSGLLSWLK 60
Query: 61 EYQENSDIVSDSPVWQDQILENEEAIALSRKDKTIQHVEVFCYARSTL 108
EYQENSDIVSDSPVWQDQILENEEAIALSRKDKTIQHVEVFCYA L
Sbjct: 61 EYQENSDIVSDSPVWQDQILENEEAIALSRKDKTIQHVEVFCYASQDL 108
>gi|53832014 choroideremia-like Rab escort protein 2 [Homo sapiens]
Length = 656
Score = 173 bits (438), Expect = 3e-44
Identities = 82/105 (78%), Positives = 93/105 (88%), Gaps = 1/105 (0%)
Query: 1 MADTLPSEFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFSFSGLLSWLK 60
MAD LP+EFDV++IGTGLPESI+AAACSRSG+RVLH+DSRSYYGGNWASFSFSGLLSWLK
Sbjct: 1 MADNLPTEFDVVIIGTGLPESILAAACSRSGQRVLHIDSRSYYGGNWASFSFSGLLSWLK 60
Query: 61 EYQENSDIVSDSP-VWQDQILENEEAIALSRKDKTIQHVEVFCYA 104
EYQ+N+DI +S VWQD I E EEAI L +KD+TIQH E FCYA
Sbjct: 61 EYQQNNDIGEESTVVWQDLIHETEEAITLRKKDETIQHTEAFCYA 105
>gi|169646441 GDP dissociation inhibitor 2 isoform 2 [Homo
sapiens]
Length = 400
Score = 51.6 bits (122), Expect = 1e-07
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 8 EFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFS 51
E+DVIV+GTGL E I++ S +G++VLH+D YYGG AS +
Sbjct: 4 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASIT 47
>gi|6598323 GDP dissociation inhibitor 2 isoform 1 [Homo sapiens]
Length = 445
Score = 51.6 bits (122), Expect = 1e-07
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 8 EFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFS 51
E+DVIV+GTGL E I++ S +G++VLH+D YYGG AS +
Sbjct: 4 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASIT 47
>gi|4503971 GDP dissociation inhibitor 1 [Homo sapiens]
Length = 447
Score = 50.8 bits (120), Expect = 2e-07
Identities = 22/47 (46%), Positives = 33/47 (70%)
Query: 5 LPSEFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFS 51
+ E+DVIV+GTGL E I++ S +G++VLH+D YYGG +S +
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSIT 47
>gi|203098013 all-trans-13,14-dihydroretinol saturase [Homo sapiens]
Length = 610
Score = 38.1 bits (87), Expect = 0.002
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 2 ADTLPSEFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFSFSGL 55
A+ +P + DV+VIG+G AA +++G+RVL ++ + GG +F +GL
Sbjct: 61 ANQVPEKLDVVVIGSGFGGLAAAAILAKAGKRVLVLEQHTKAGGCCHTFGKNGL 114
>gi|239754799 PREDICTED: similar to hCG1797215 [Homo sapiens]
Length = 93
Score = 30.0 bits (66), Expect = 0.42
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 45 GNWASFSFSGLLSWLKEYQENSDIVSD----SPVWQDQI 79
G+W F G + L QE DI+SD P+W+++I
Sbjct: 53 GSWGKGLFDGQQNELLRKQEREDIISDLRQRRPIWKEEI 91
>gi|239749323 PREDICTED: similar to hCG1797215 [Homo sapiens]
Length = 93
Score = 30.0 bits (66), Expect = 0.42
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 45 GNWASFSFSGLLSWLKEYQENSDIVSD----SPVWQDQI 79
G+W F G + L QE DI+SD P+W+++I
Sbjct: 53 GSWGKGLFDGQQNELLRKQEREDIISDLRQRRPIWKEEI 91
>gi|239743413 PREDICTED: hypothetical protein XP_002342849 [Homo
sapiens]
Length = 93
Score = 30.0 bits (66), Expect = 0.42
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 45 GNWASFSFSGLLSWLKEYQENSDIVSD----SPVWQDQI 79
G+W F G + L QE DI+SD P+W+++I
Sbjct: 53 GSWGKGLFDGQQNELLRKQEREDIISDLRQRRPIWKEEI 91
>gi|239509120 PREDICTED: similar to hCG1797215 [Homo sapiens]
Length = 93
Score = 30.0 bits (66), Expect = 0.42
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 45 GNWASFSFSGLLSWLKEYQENSDIVSD----SPVWQDQI 79
G+W F G + L QE DI+SD P+W+++I
Sbjct: 53 GSWGKGLFDGQQNELLRKQEREDIISDLRQRRPIWKEEI 91
>gi|62865635 squalene epoxidase [Homo sapiens]
Length = 574
Score = 28.9 bits (63), Expect = 0.93
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 10 DVIVIGTGLPESIIAAACSRSGRRVLHVD 38
+VI++G G+ S +AA SR GR+V ++
Sbjct: 125 EVIIVGAGVLGSALAAVLSRDGRKVTVIE 153
>gi|226246608 RNA polymerase II associated protein 2 [Homo sapiens]
Length = 612
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 40 RSYYGGNWASFSFSGLLSWLKEYQENSDIVSDS----PVWQDQILENEEAI 86
R YG N+AS S +KE + DI+SD P W++ +E++
Sbjct: 384 RFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHFPAWRESQNSLDESL 434
>gi|117414154 sodium channel associated protein 2 isoform b [Homo
sapiens]
Length = 939
Score = 27.7 bits (60), Expect = 2.1
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 59 LKEYQENSDIVSDSPVWQDQILENEEAIALSRKDKTIQHVE 99
+KEYQE D++S Q LENE IAL+ + + Q V+
Sbjct: 529 IKEYQEKIDVLSQ----QYMDLENEFRIALTVEARRFQDVK 565
>gi|117414162 sodium channel associated protein 2 isoform a [Homo
sapiens]
Length = 1032
Score = 27.7 bits (60), Expect = 2.1
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 59 LKEYQENSDIVSDSPVWQDQILENEEAIALSRKDKTIQHVE 99
+KEYQE D++S Q LENE IAL+ + + Q V+
Sbjct: 622 IKEYQEKIDVLSQ----QYMDLENEFRIALTVEARRFQDVK 658
>gi|151301096 trimethylguanosine synthase homolog [Homo sapiens]
Length = 853
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 57 SWLKEYQENSDIVSDSPVWQDQILENEEAIALSRKDKT 94
SW KEY+E+ + SD P +Q EN L K T
Sbjct: 141 SWRKEYEEDDILASDDPSSIEQ-YENTRTYELQSKKDT 177
>gi|5453894 catalytic phosphatidylinositol 3-kinase beta [Homo
sapiens]
Length = 1070
Score = 26.9 bits (58), Expect = 3.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 48 ASFSFSGLLSWLKEYQENSDI 68
A+F+ LL+WLKEY D+
Sbjct: 874 AAFNKDALLNWLKEYNSGDDL 894
>gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens]
Length = 525
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 11 VIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFSFSGLLS 57
+ V+G GL SI + +++H DS + G N FS G S
Sbjct: 401 IFVVGFGLYGSIHGPTDYQVNIQIIHTDSNTVLGQNDTGFSCDGSAS 447
>gi|50355990 MORN repeat containing 3 [Homo sapiens]
Length = 240
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 29 RSGRRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENSDIVSDSPVWQDQILENEEAIAL 88
+SG + + YY G+W SG W + Y N DI W++ E + L
Sbjct: 100 KSGYGIQFFGPKEYYEGDWCGSQRSG---WGRMYYSNGDIYEGQ--WENDKPNGEGMLRL 154
Query: 89 SRKDK 93
++
Sbjct: 155 KNGNR 159
>gi|183227703 mitochondrial translation optimization 1 homolog
isoform c [Homo sapiens]
Length = 732
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 9 FDVIVIGTGLPESIIAAACSRSGRRVLHVDSR 40
FDVIVIG G + A A +R G R L + R
Sbjct: 37 FDVIVIGGGHAGTEAATAAARCGSRTLLLTHR 68
>gi|19882217 mitochondrial translation optimization 1 homolog
isoform b [Homo sapiens]
Length = 717
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 9 FDVIVIGTGLPESIIAAACSRSGRRVLHVDSR 40
FDVIVIG G + A A +R G R L + R
Sbjct: 37 FDVIVIGGGHAGTEAATAAARCGSRTLLLTHR 68
>gi|74024895 mitochondrial translation optimization 1 homolog
isoform a [Homo sapiens]
Length = 692
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 9 FDVIVIGTGLPESIIAAACSRSGRRVLHVDSR 40
FDVIVIG G + A A +R G R L + R
Sbjct: 37 FDVIVIGGGHAGTEAATAAARCGSRTLLLTHR 68
>gi|4557735 monoamine oxidase A [Homo sapiens]
Length = 527
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 9 FDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGG 45
FDV+VIG G+ A + G VL +++R GG
Sbjct: 14 FDVVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGG 50
>gi|33636719 translocase of inner mitochondrial membrane 44 [Homo
sapiens]
Length = 452
Score = 26.2 bits (56), Expect = 6.0
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 39 SRSYYGGNWASFSFSGLLSWLK-EYQENSDIVSDSPVWQDQILENEEAIALS---RKDKT 94
S+SY GN F SGLL +K E +N ++ ++D+ EE+ L RK KT
Sbjct: 48 SKSYSSGNRKGF-LSGLLDNVKQELAKNKEMKESIKKFRDEARRLEESDVLQEARRKYKT 106
Query: 95 IQ 96
I+
Sbjct: 107 IE 108
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,133,456
Number of Sequences: 37866
Number of extensions: 160419
Number of successful extensions: 395
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 378
Number of HSP's gapped (non-prelim): 24
length of query: 110
length of database: 18,247,518
effective HSP length: 80
effective length of query: 30
effective length of database: 15,218,238
effective search space: 456547140
effective search space used: 456547140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.