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Search of human proteins with 223942045
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|223942045 hypothetical protein LOC140873 [Homo sapiens]
(202 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|223942045 hypothetical protein LOC140873 [Homo sapiens] 440 e-124
gi|5902082 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 [H... 35 0.033
gi|5174697 alpha2,3-sialyltransferase VI [Homo sapiens] 30 1.4
gi|118572596 peripherin 2 [Homo sapiens] 30 1.8
gi|30410037 late cornified envelope 3C [Homo sapiens] 29 3.1
gi|194272180 plexin B1 [Homo sapiens] 29 3.1
gi|40254442 plexin B1 [Homo sapiens] 29 3.1
gi|28373086 sialyltransferase 6 isoform i [Homo sapiens] 29 3.1
gi|28373082 sialyltransferase 6 isoform g [Homo sapiens] 29 3.1
gi|28373078 sialyltransferase 6 isoform f [Homo sapiens] 29 3.1
gi|28373074 sialyltransferase 6 isoform d [Homo sapiens] 29 3.1
gi|28373070 sialyltransferase 6 isoform b [Homo sapiens] 29 3.1
gi|28373068 sialyltransferase 6 isoform a [Homo sapiens] 29 3.1
gi|5454060 sialyltransferase 6 isoform j [Homo sapiens] 29 3.1
gi|21264332 sialyltransferase 7A [Homo sapiens] 28 4.1
gi|5454058 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 [H... 28 4.1
gi|32130536 CKLF-like MARVEL transmembrane domain containing 8 [... 28 5.3
gi|109633046 ST3 beta-galactoside alpha-2,3-sialyltransferase 5 ... 28 5.3
gi|109633044 ST3 beta-galactoside alpha-2,3-sialyltransferase 5 ... 28 5.3
gi|54607018 RYK receptor-like tyrosine kinase isoform 2 [Homo sa... 28 5.3
gi|54607020 RYK receptor-like tyrosine kinase isoform 1 [Homo sa... 28 5.3
gi|205830434 D4, zinc and double PHD fingers family 1 isoform c ... 28 5.3
gi|205830432 D4, zinc and double PHD fingers family 1 isoform b ... 28 5.3
gi|205830430 D4, zinc and double PHD fingers family 1 isoform a ... 28 5.3
gi|39753953 zinc finger protein 800 [Homo sapiens] 28 5.3
gi|24415404 MDN1, midasin homolog [Homo sapiens] 28 6.9
gi|89191868 von Willebrand factor preproprotein [Homo sapiens] 27 9.0
>gi|223942045 hypothetical protein LOC140873 [Homo sapiens]
Length = 202
Score = 440 bits (1131), Expect = e-124
Identities = 202/202 (100%), Positives = 202/202 (100%)
Query: 1 MKRWQIFVLWVFWVLILWLMTPYLDLTPESAPQEKRMYLVPQHCDCPWFSSGKCGCPSET 60
MKRWQIFVLWVFWVLILWLMTPYLDLTPESAPQEKRMYLVPQHCDCPWFSSGKCGCPSET
Sbjct: 1 MKRWQIFVLWVFWVLILWLMTPYLDLTPESAPQEKRMYLVPQHCDCPWFSSGKCGCPSET 60
Query: 61 LNCSSCHHTADEWNWLDACSRKTMGYLMRTRESMTSDTVLWWLGMNSGSELGKLWRKLFK 120
LNCSSCHHTADEWNWLDACSRKTMGYLMRTRESMTSDTVLWWLGMNSGSELGKLWRKLFK
Sbjct: 61 LNCSSCHHTADEWNWLDACSRKTMGYLMRTRESMTSDTVLWWLGMNSGSELGKLWRKLFK 120
Query: 121 GIPRLSVSHFDFYCGTCVLLGRPQIPQGSSLGNDIDQYPVVFRNASDQGSWMQLEMLLRK 180
GIPRLSVSHFDFYCGTCVLLGRPQIPQGSSLGNDIDQYPVVFRNASDQGSWMQLEMLLRK
Sbjct: 121 GIPRLSVSHFDFYCGTCVLLGRPQIPQGSSLGNDIDQYPVVFRNASDQGSWMQLEMLLRK 180
Query: 181 LSDLVWTSDALSDKILEDGLVP 202
LSDLVWTSDALSDKILEDGLVP
Sbjct: 181 LSDLVWTSDALSDKILEDGLVP 202
>gi|5902082 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 [Homo
sapiens]
Length = 350
Score = 35.4 bits (80), Expect = 0.033
Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 12/149 (8%)
Query: 22 PYLDLTPESAPQEKRMYLVPQHCDCPWFSSGKCGCPSETLNCSSCHHTADEWNWLDACSR 81
PYLD + R+ LVP + S + ++ C C A +W D+
Sbjct: 35 PYLD--SGALDGTHRVKLVPGYAGLQRLSKERLS--GKSCACRRCMGDAGASDWFDSHFD 90
Query: 82 KTMGYLMRTRESMT--SDTVLWWLGMN---SGSELGKLWRKLFKGIPRLSVSHF--DFYC 134
+ + TRE+M D WW+ + ++ KLF+ +P + F C
Sbjct: 91 GNISPVW-TRENMDLPPDVQRWWMMLQPQFKSHNTNEVLEKLFQIVPGENPYRFRDPHQC 149
Query: 135 GTCVLLGRPQIPQGSSLGNDIDQYPVVFR 163
C ++G +GS G D+D + + R
Sbjct: 150 RRCAVVGNSGNLRGSGYGQDVDGHNFIMR 178
>gi|5174697 alpha2,3-sialyltransferase VI [Homo sapiens]
Length = 331
Score = 30.0 bits (66), Expect = 1.4
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 134 CGTCVLLGRPQIPQGSSLGNDIDQYPVVFRNASDQGSWMQLEMLLRKLSDLVWTSDALSD 193
C CV++G + + +LG ID Y V+ R + + E+ R L + SD
Sbjct: 115 CKKCVVVGNGGVLKNKTLGEKIDSYDVIIRMNNGPVLGHEEEVGRRTTFRLFYPESVFSD 174
Query: 194 KILED 198
I D
Sbjct: 175 PIHND 179
>gi|118572596 peripherin 2 [Homo sapiens]
Length = 346
Score = 29.6 bits (65), Expect = 1.8
Identities = 28/104 (26%), Positives = 38/104 (36%), Gaps = 16/104 (15%)
Query: 13 WVLILWLMTPYLDLTPESAPQEKRM-----YLV---PQHCDCPWFSSGKCGCPSETLNCS 64
W I W+ YLD + + + YLV P C P S C + +
Sbjct: 174 WFEIQWISNRYLDFSSKEVKDRIKSNVDGRYLVDGVPFSCCNP---SSPRPCIQYQITNN 230
Query: 65 SCH----HTADEWN-WLDACSRKTMGYLMRTRESMTSDTVLWWL 103
S H H +E N W+ C + Y SM T+L WL
Sbjct: 231 SAHYSYDHQTEELNLWVRGCRAALLSYYSSLMNSMGVVTLLIWL 274
>gi|30410037 late cornified envelope 3C [Homo sapiens]
Length = 94
Score = 28.9 bits (63), Expect = 3.1
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 27 TPESAPQEKRMYLVPQHCDCPWFSSGKCGCPSETLNCSSCHH 68
+P+ P+ L P DC SSG CG PS C HH
Sbjct: 18 SPKCPPKSPAQCLPPPSSDCA-LSSGGCG-PSSESGCCLSHH 57
>gi|194272180 plexin B1 [Homo sapiens]
Length = 2135
Score = 28.9 bits (63), Expect = 3.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 127 VSHFDFYCGTCVLLGRPQIPQGSSLGNDIDQY 158
++H D YCG CVLLGR S G +Q+
Sbjct: 492 LAHRDPYCGWCVLLGRCSRRSECSRGQGPEQW 523
>gi|40254442 plexin B1 [Homo sapiens]
Length = 2135
Score = 28.9 bits (63), Expect = 3.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 127 VSHFDFYCGTCVLLGRPQIPQGSSLGNDIDQY 158
++H D YCG CVLLGR S G +Q+
Sbjct: 492 LAHRDPYCGWCVLLGRCSRRSECSRGQGPEQW 523
>gi|28373086 sialyltransferase 6 isoform i [Homo sapiens]
Length = 413
Score = 28.9 bits (63), Expect = 3.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 124 RLSVSHFDFYCGTCVLLGRPQIPQGSSLGNDIDQYPVVFR 163
RL+ + C C+++G + SLG+ ID Y +V R
Sbjct: 185 RLTPALDSLRCRRCIIVGNGGVLANKSLGSRIDDYDIVVR 224
>gi|28373082 sialyltransferase 6 isoform g [Homo sapiens]
Length = 359
Score = 28.9 bits (63), Expect = 3.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 124 RLSVSHFDFYCGTCVLLGRPQIPQGSSLGNDIDQYPVVFR 163
RL+ + C C+++G + SLG+ ID Y +V R
Sbjct: 131 RLTPALDSLRCRRCIIVGNGGVLANKSLGSRIDDYDIVVR 170
>gi|28373078 sialyltransferase 6 isoform f [Homo sapiens]
Length = 429
Score = 28.9 bits (63), Expect = 3.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 124 RLSVSHFDFYCGTCVLLGRPQIPQGSSLGNDIDQYPVVFR 163
RL+ + C C+++G + SLG+ ID Y +V R
Sbjct: 201 RLTPALDSLRCRRCIIVGNGGVLANKSLGSRIDDYDIVVR 240
>gi|28373074 sialyltransferase 6 isoform d [Homo sapiens]
Length = 277
Score = 28.9 bits (63), Expect = 3.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 124 RLSVSHFDFYCGTCVLLGRPQIPQGSSLGNDIDQYPVVFR 163
RL+ + C C+++G + SLG+ ID Y +V R
Sbjct: 147 RLTPALDSLRCRRCIIVGNGGVLANKSLGSRIDDYDIVVR 186
>gi|28373070 sialyltransferase 6 isoform b [Homo sapiens]
Length = 390
Score = 28.9 bits (63), Expect = 3.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 124 RLSVSHFDFYCGTCVLLGRPQIPQGSSLGNDIDQYPVVFR 163
RL+ + C C+++G + SLG+ ID Y +V R
Sbjct: 162 RLTPALDSLRCRRCIIVGNGGVLANKSLGSRIDDYDIVVR 201
>gi|28373068 sialyltransferase 6 isoform a [Homo sapiens]
Length = 444
Score = 28.9 bits (63), Expect = 3.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 124 RLSVSHFDFYCGTCVLLGRPQIPQGSSLGNDIDQYPVVFR 163
RL+ + C C+++G + SLG+ ID Y +V R
Sbjct: 216 RLTPALDSLRCRRCIIVGNGGVLANKSLGSRIDDYDIVVR 255
>gi|5454060 sialyltransferase 6 isoform j [Homo sapiens]
Length = 375
Score = 28.9 bits (63), Expect = 3.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 124 RLSVSHFDFYCGTCVLLGRPQIPQGSSLGNDIDQYPVVFR 163
RL+ + C C+++G + SLG+ ID Y +V R
Sbjct: 147 RLTPALDSLRCRRCIIVGNGGVLANKSLGSRIDDYDIVVR 186
>gi|21264332 sialyltransferase 7A [Homo sapiens]
Length = 600
Score = 28.5 bits (62), Expect = 4.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 134 CGTCVLLGRPQIPQGSSLGNDIDQYPVVFR 163
C TC ++G I S +G +ID + VFR
Sbjct: 362 CITCAVVGNGGILNNSHMGQEIDSHDYVFR 391
>gi|5454058 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 [Homo
sapiens]
Length = 329
Score = 28.5 bits (62), Expect = 4.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 134 CGTCVLLGRPQIPQGSSLGNDIDQYPVVFR 163
C CV++G + SSLG+ I++Y VV R
Sbjct: 113 CRRCVVVGNGHRLRNSSLGDAINKYDVVIR 142
>gi|32130536 CKLF-like MARVEL transmembrane domain containing 8
[Homo sapiens]
Length = 173
Score = 28.1 bits (61), Expect = 5.3
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 12/51 (23%)
Query: 4 WQIFVLWVFWVLILWLMTPYLDLTPESAPQEKRMYLVPQHCDCPWFSSGKC 54
W +FV +WVL ++ + Y+ +T PQ PW + G C
Sbjct: 72 WVMFVAVFYWVLTVFFLIIYITMTYTRIPQ------------VPWTTVGLC 110
>gi|109633046 ST3 beta-galactoside alpha-2,3-sialyltransferase 5
isoform 2 [Homo sapiens]
Length = 395
Score = 28.1 bits (61), Expect = 5.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 134 CGTCVLLGRPQIPQGSSLGNDIDQYPVVFR 163
C CV++G I G LG+ ++Q+ VV R
Sbjct: 169 CRRCVVIGSGGILHGLELGHTLNQFDVVIR 198
>gi|109633044 ST3 beta-galactoside alpha-2,3-sialyltransferase 5
isoform 1 [Homo sapiens]
Length = 418
Score = 28.1 bits (61), Expect = 5.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 134 CGTCVLLGRPQIPQGSSLGNDIDQYPVVFR 163
C CV++G I G LG+ ++Q+ VV R
Sbjct: 192 CRRCVVIGSGGILHGLELGHTLNQFDVVIR 221
>gi|54607018 RYK receptor-like tyrosine kinase isoform 2 [Homo
sapiens]
Length = 607
Score = 28.1 bits (61), Expect = 5.3
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 9 LWVFWVLILWLMT----PYLDLTP-ESAPQEKRMYLVPQHCDCP 47
+W F V + LMT PY+D+ P E A K Y + Q +CP
Sbjct: 525 VWAFGVTLWELMTLGQTPYVDIDPFEMAAYLKDGYRIAQPINCP 568
>gi|54607020 RYK receptor-like tyrosine kinase isoform 1 [Homo
sapiens]
Length = 610
Score = 28.1 bits (61), Expect = 5.3
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 9 LWVFWVLILWLMT----PYLDLTP-ESAPQEKRMYLVPQHCDCP 47
+W F V + LMT PY+D+ P E A K Y + Q +CP
Sbjct: 528 VWAFGVTLWELMTLGQTPYVDIDPFEMAAYLKDGYRIAQPINCP 571
>gi|205830434 D4, zinc and double PHD fingers family 1 isoform c
[Homo sapiens]
Length = 332
Score = 28.1 bits (61), Expect = 5.3
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 12 FWVLILWLMTPYLDLTPESAPQEKRMYLVPQ-HCDCPWFSSGKCGCPSETLNCSSC 66
F+ + W+ T + AP ++P +CD S K GCP + ++C+ C
Sbjct: 189 FYKELAWVPEAQRKHTAKKAPDGT---VIPNGYCDFCLGGSKKTGCPEDLISCADC 241
>gi|205830432 D4, zinc and double PHD fingers family 1 isoform b
[Homo sapiens]
Length = 380
Score = 28.1 bits (61), Expect = 5.3
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 12 FWVLILWLMTPYLDLTPESAPQEKRMYLVPQ-HCDCPWFSSGKCGCPSETLNCSSC 66
F+ + W+ T + AP ++P +CD S K GCP + ++C+ C
Sbjct: 227 FYKELAWVPEAQRKHTAKKAPDGT---VIPNGYCDFCLGGSKKTGCPEDLISCADC 279
>gi|205830430 D4, zinc and double PHD fingers family 1 isoform a
[Homo sapiens]
Length = 414
Score = 28.1 bits (61), Expect = 5.3
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 12 FWVLILWLMTPYLDLTPESAPQEKRMYLVPQ-HCDCPWFSSGKCGCPSETLNCSSC 66
F+ + W+ T + AP ++P +CD S K GCP + ++C+ C
Sbjct: 271 FYKELAWVPEAQRKHTAKKAPDGT---VIPNGYCDFCLGGSKKTGCPEDLISCADC 323
>gi|39753953 zinc finger protein 800 [Homo sapiens]
Length = 664
Score = 28.1 bits (61), Expect = 5.3
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 113 KLWRKLFKGIPRLSVSHFDFYC 134
KL R LF+G+P L ++H FYC
Sbjct: 72 KLCRSLFRGLPNL-ITHKKFYC 92
>gi|24415404 MDN1, midasin homolog [Homo sapiens]
Length = 5596
Score = 27.7 bits (60), Expect = 6.9
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 154 DIDQYPVVFRNASDQGSWMQLEMLLRKLSDLVWTSDALS 192
D+ P++ + G W++ L+ +S ++WT+ A+S
Sbjct: 3084 DVSGLPILSSSHVTLGEWVERTQQLQDISSMLWTNMAIS 3122
>gi|89191868 von Willebrand factor preproprotein [Homo sapiens]
Length = 2813
Score = 27.3 bits (59), Expect = 9.0
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 46 CPWFSSGKCGCPSET--LNCSSCHHTADEWNWLD 77
CP F GK P ET + C++C +WN D
Sbjct: 827 CPCFHQGKEYAPGETVKIGCNTCVCRDRKWNCTD 860
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,758,168
Number of Sequences: 37866
Number of extensions: 401183
Number of successful extensions: 820
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 804
Number of HSP's gapped (non-prelim): 27
length of query: 202
length of database: 18,247,518
effective HSP length: 97
effective length of query: 105
effective length of database: 14,574,516
effective search space: 1530324180
effective search space used: 1530324180
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.