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Search of human proteins with 223718164
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|223718164 leucine rich transmembrane and 0-methyltransferase
domain containing isoform 4 [Homo sapiens]
(291 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|223718164 leucine rich transmembrane and 0-methyltransferase ... 590 e-169
gi|223718159 leucine rich transmembrane and 0-methyltransferase ... 590 e-169
gi|223718169 leucine rich transmembrane and 0-methyltransferase ... 496 e-141
gi|205830453 catechol-O-methyltransferase isoform MB-COMT [Homo ... 168 6e-42
gi|205830451 catechol-O-methyltransferase isoform MB-COMT [Homo ... 168 6e-42
gi|4502969 catechol-O-methyltransferase isoform MB-COMT [Homo sa... 168 6e-42
gi|6466450 catechol-O-methyltransferase isoform S-COMT [Homo sap... 160 1e-39
gi|31542747 catechol-O-methyltransferase domain containing 1 [Ho... 48 9e-06
gi|18104993 protein tyrosine phosphatase, non-receptor type 6 is... 33 0.29
gi|18104989 protein tyrosine phosphatase, non-receptor type 6 is... 33 0.29
gi|18104991 protein tyrosine phosphatase, non-receptor type 6 is... 33 0.29
gi|216548382 WD repeat domain 47 isoform 3 [Homo sapiens] 32 0.86
gi|216548378 WD repeat domain 47 isoform 1 [Homo sapiens] 32 0.86
gi|216548347 WD repeat domain 47 isoform 2 [Homo sapiens] 32 0.86
gi|90421313 cystic fibrosis transmembrane conductance regulator ... 31 1.1
gi|239750123 PREDICTED: hypothetical protein XP_002347295 [Homo ... 30 1.9
gi|154350241 brefeldin A-inhibited guanine nucleotide-exchange p... 30 2.5
gi|49472822 eukaryotic translation initiation factor 3, subunit ... 29 4.3
gi|169214772 PREDICTED: similar to hCG1783157 [Homo sapiens] 28 9.5
gi|239751973 PREDICTED: hypothetical protein XP_002348052 [Homo ... 28 9.5
gi|239746455 PREDICTED: hypothetical protein XP_002344215 [Homo ... 28 9.5
gi|150010661 SEC14-like 5 [Homo sapiens] 28 9.5
>gi|223718164 leucine rich transmembrane and 0-methyltransferase
domain containing isoform 4 [Homo sapiens]
Length = 291
Score = 590 bits (1521), Expect = e-169
Identities = 291/291 (100%), Positives = 291/291 (100%)
Query: 1 MGTPWRKRKGIAGPGLPDLSCALVLQPRAQVGTMSPAIALAFLPLVVTLLVRYRHYFRLL 60
MGTPWRKRKGIAGPGLPDLSCALVLQPRAQVGTMSPAIALAFLPLVVTLLVRYRHYFRLL
Sbjct: 1 MGTPWRKRKGIAGPGLPDLSCALVLQPRAQVGTMSPAIALAFLPLVVTLLVRYRHYFRLL 60
Query: 61 VRTVLLRSLRDCLSGLRIEERAFSYVLTHALPGDPGHILTTLDHWSSRCEYLSHMGPVKG 120
VRTVLLRSLRDCLSGLRIEERAFSYVLTHALPGDPGHILTTLDHWSSRCEYLSHMGPVKG
Sbjct: 61 VRTVLLRSLRDCLSGLRIEERAFSYVLTHALPGDPGHILTTLDHWSSRCEYLSHMGPVKG 120
Query: 121 QILMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAG 180
QILMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAG
Sbjct: 121 QILMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAG 180
Query: 181 FDEHMVELIVGSSEDVIPCLRTQYQLSRADLVLLAHRPRCYLRDLQLLEAHALLPAGATV 240
FDEHMVELIVGSSEDVIPCLRTQYQLSRADLVLLAHRPRCYLRDLQLLEAHALLPAGATV
Sbjct: 181 FDEHMVELIVGSSEDVIPCLRTQYQLSRADLVLLAHRPRCYLRDLQLLEAHALLPAGATV 240
Query: 241 LADHVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKDGIAQLTYAGPG 291
LADHVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKDGIAQLTYAGPG
Sbjct: 241 LADHVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKDGIAQLTYAGPG 291
>gi|223718159 leucine rich transmembrane and 0-methyltransferase
domain containing isoform 4 [Homo sapiens]
Length = 291
Score = 590 bits (1521), Expect = e-169
Identities = 291/291 (100%), Positives = 291/291 (100%)
Query: 1 MGTPWRKRKGIAGPGLPDLSCALVLQPRAQVGTMSPAIALAFLPLVVTLLVRYRHYFRLL 60
MGTPWRKRKGIAGPGLPDLSCALVLQPRAQVGTMSPAIALAFLPLVVTLLVRYRHYFRLL
Sbjct: 1 MGTPWRKRKGIAGPGLPDLSCALVLQPRAQVGTMSPAIALAFLPLVVTLLVRYRHYFRLL 60
Query: 61 VRTVLLRSLRDCLSGLRIEERAFSYVLTHALPGDPGHILTTLDHWSSRCEYLSHMGPVKG 120
VRTVLLRSLRDCLSGLRIEERAFSYVLTHALPGDPGHILTTLDHWSSRCEYLSHMGPVKG
Sbjct: 61 VRTVLLRSLRDCLSGLRIEERAFSYVLTHALPGDPGHILTTLDHWSSRCEYLSHMGPVKG 120
Query: 121 QILMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAG 180
QILMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAG
Sbjct: 121 QILMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAG 180
Query: 181 FDEHMVELIVGSSEDVIPCLRTQYQLSRADLVLLAHRPRCYLRDLQLLEAHALLPAGATV 240
FDEHMVELIVGSSEDVIPCLRTQYQLSRADLVLLAHRPRCYLRDLQLLEAHALLPAGATV
Sbjct: 181 FDEHMVELIVGSSEDVIPCLRTQYQLSRADLVLLAHRPRCYLRDLQLLEAHALLPAGATV 240
Query: 241 LADHVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKDGIAQLTYAGPG 291
LADHVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKDGIAQLTYAGPG
Sbjct: 241 LADHVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKDGIAQLTYAGPG 291
>gi|223718169 leucine rich transmembrane and 0-methyltransferase
domain containing isoform 6 [Homo sapiens]
Length = 251
Score = 496 bits (1277), Expect = e-141
Identities = 251/291 (86%), Positives = 251/291 (86%), Gaps = 40/291 (13%)
Query: 1 MGTPWRKRKGIAGPGLPDLSCALVLQPRAQVGTMSPAIALAFLPLVVTLLVRYRHYFRLL 60
MGTPWRKRKGIAGPGLPDLSCALVLQP
Sbjct: 1 MGTPWRKRKGIAGPGLPDLSCALVLQP--------------------------------- 27
Query: 61 VRTVLLRSLRDCLSGLRIEERAFSYVLTHALPGDPGHILTTLDHWSSRCEYLSHMGPVKG 120
SLRDCLSGLRIEERAFSYVLTHALPGDPGHILTTLDHWSSRCEYLSHMGPVKG
Sbjct: 28 -------SLRDCLSGLRIEERAFSYVLTHALPGDPGHILTTLDHWSSRCEYLSHMGPVKG 80
Query: 121 QILMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAG 180
QILMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAG
Sbjct: 81 QILMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAG 140
Query: 181 FDEHMVELIVGSSEDVIPCLRTQYQLSRADLVLLAHRPRCYLRDLQLLEAHALLPAGATV 240
FDEHMVELIVGSSEDVIPCLRTQYQLSRADLVLLAHRPRCYLRDLQLLEAHALLPAGATV
Sbjct: 141 FDEHMVELIVGSSEDVIPCLRTQYQLSRADLVLLAHRPRCYLRDLQLLEAHALLPAGATV 200
Query: 241 LADHVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKDGIAQLTYAGPG 291
LADHVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKDGIAQLTYAGPG
Sbjct: 201 LADHVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKDGIAQLTYAGPG 251
>gi|205830453 catechol-O-methyltransferase isoform MB-COMT [Homo
sapiens]
Length = 271
Score = 168 bits (425), Expect = 6e-42
Identities = 94/259 (36%), Positives = 150/259 (57%), Gaps = 6/259 (2%)
Query: 37 AIALAFLPLVVTLLVRYRHYFRLLV----RTVLLRSLRDCLSGLRIEERAFSYVLTHALP 92
A L L L+V LL+ RH+ L +L+ + + L G E+R ++VL HA P
Sbjct: 10 AAVLLGLVLLVVLLLLLRHWGWGLCLIGWNEFILQPIHNLLMGDTKEQRILNHVLQHAEP 69
Query: 93 GDPGHILTTLDHWSSRCEYLSHMGPVKGQILMRLVEEKAPACVLELGTYCGYSTLLIARA 152
G+ +L +D + + E+ ++G KG+I+ +++E P+ +LELG YCGYS + +AR
Sbjct: 70 GNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARL 129
Query: 153 LPPGGRLLTVERDPRTAAVAEKLIRLAGFDEHMVELIVGSSEDVIPCLRTQYQLSRADLV 212
L PG RL+T+E +P AA+ ++++ AG + V L+VG+S+D+IP L+ +Y + D+V
Sbjct: 130 LSPGARLITIEINPDCAAITQRMVDFAGVKD-KVTLVVGASQDIIPQLKKKYDVDTLDMV 188
Query: 213 LLAHRPRCYLRDLQLLEAHALLPAGATVLADHVLFPGAPRFLQYAKSCGRYRCRLHHTGL 272
L H YL D LLE LL G +LAD+V+ PGAP FL + + + C H+
Sbjct: 189 FLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGAPDFLAHVRGSSCFEC-THYQSF 247
Query: 273 PDFPAIKDGIAQLTYAGPG 291
++ + DG+ + Y GPG
Sbjct: 248 LEYREVVDGLEKAIYKGPG 266
>gi|205830451 catechol-O-methyltransferase isoform MB-COMT [Homo
sapiens]
Length = 271
Score = 168 bits (425), Expect = 6e-42
Identities = 94/259 (36%), Positives = 150/259 (57%), Gaps = 6/259 (2%)
Query: 37 AIALAFLPLVVTLLVRYRHYFRLLV----RTVLLRSLRDCLSGLRIEERAFSYVLTHALP 92
A L L L+V LL+ RH+ L +L+ + + L G E+R ++VL HA P
Sbjct: 10 AAVLLGLVLLVVLLLLLRHWGWGLCLIGWNEFILQPIHNLLMGDTKEQRILNHVLQHAEP 69
Query: 93 GDPGHILTTLDHWSSRCEYLSHMGPVKGQILMRLVEEKAPACVLELGTYCGYSTLLIARA 152
G+ +L +D + + E+ ++G KG+I+ +++E P+ +LELG YCGYS + +AR
Sbjct: 70 GNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARL 129
Query: 153 LPPGGRLLTVERDPRTAAVAEKLIRLAGFDEHMVELIVGSSEDVIPCLRTQYQLSRADLV 212
L PG RL+T+E +P AA+ ++++ AG + V L+VG+S+D+IP L+ +Y + D+V
Sbjct: 130 LSPGARLITIEINPDCAAITQRMVDFAGVKD-KVTLVVGASQDIIPQLKKKYDVDTLDMV 188
Query: 213 LLAHRPRCYLRDLQLLEAHALLPAGATVLADHVLFPGAPRFLQYAKSCGRYRCRLHHTGL 272
L H YL D LLE LL G +LAD+V+ PGAP FL + + + C H+
Sbjct: 189 FLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGAPDFLAHVRGSSCFEC-THYQSF 247
Query: 273 PDFPAIKDGIAQLTYAGPG 291
++ + DG+ + Y GPG
Sbjct: 248 LEYREVVDGLEKAIYKGPG 266
>gi|4502969 catechol-O-methyltransferase isoform MB-COMT [Homo
sapiens]
Length = 271
Score = 168 bits (425), Expect = 6e-42
Identities = 94/259 (36%), Positives = 150/259 (57%), Gaps = 6/259 (2%)
Query: 37 AIALAFLPLVVTLLVRYRHYFRLLV----RTVLLRSLRDCLSGLRIEERAFSYVLTHALP 92
A L L L+V LL+ RH+ L +L+ + + L G E+R ++VL HA P
Sbjct: 10 AAVLLGLVLLVVLLLLLRHWGWGLCLIGWNEFILQPIHNLLMGDTKEQRILNHVLQHAEP 69
Query: 93 GDPGHILTTLDHWSSRCEYLSHMGPVKGQILMRLVEEKAPACVLELGTYCGYSTLLIARA 152
G+ +L +D + + E+ ++G KG+I+ +++E P+ +LELG YCGYS + +AR
Sbjct: 70 GNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARL 129
Query: 153 LPPGGRLLTVERDPRTAAVAEKLIRLAGFDEHMVELIVGSSEDVIPCLRTQYQLSRADLV 212
L PG RL+T+E +P AA+ ++++ AG + V L+VG+S+D+IP L+ +Y + D+V
Sbjct: 130 LSPGARLITIEINPDCAAITQRMVDFAGVKD-KVTLVVGASQDIIPQLKKKYDVDTLDMV 188
Query: 213 LLAHRPRCYLRDLQLLEAHALLPAGATVLADHVLFPGAPRFLQYAKSCGRYRCRLHHTGL 272
L H YL D LLE LL G +LAD+V+ PGAP FL + + + C H+
Sbjct: 189 FLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGAPDFLAHVRGSSCFEC-THYQSF 247
Query: 273 PDFPAIKDGIAQLTYAGPG 291
++ + DG+ + Y GPG
Sbjct: 248 LEYREVVDGLEKAIYKGPG 266
>gi|6466450 catechol-O-methyltransferase isoform S-COMT [Homo
sapiens]
Length = 221
Score = 160 bits (405), Expect = 1e-39
Identities = 81/213 (38%), Positives = 130/213 (61%), Gaps = 2/213 (0%)
Query: 79 EERAFSYVLTHALPGDPGHILTTLDHWSSRCEYLSHMGPVKGQILMRLVEEKAPACVLEL 138
E+R ++VL HA PG+ +L +D + + E+ ++G KG+I+ +++E P+ +LEL
Sbjct: 6 EQRILNHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLEL 65
Query: 139 GTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAGFDEHMVELIVGSSEDVIP 198
G YCGYS + +AR L PG RL+T+E +P AA+ ++++ AG + V L+VG+S+D+IP
Sbjct: 66 GAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKD-KVTLVVGASQDIIP 124
Query: 199 CLRTQYQLSRADLVLLAHRPRCYLRDLQLLEAHALLPAGATVLADHVLFPGAPRFLQYAK 258
L+ +Y + D+V L H YL D LLE LL G +LAD+V+ PGAP FL + +
Sbjct: 125 QLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGAPDFLAHVR 184
Query: 259 SCGRYRCRLHHTGLPDFPAIKDGIAQLTYAGPG 291
+ C H+ ++ + DG+ + Y GPG
Sbjct: 185 GSSCFEC-THYQSFLEYREVVDGLEKAIYKGPG 216
>gi|31542747 catechol-O-methyltransferase domain containing 1 [Homo
sapiens]
Length = 262
Score = 48.1 bits (113), Expect = 9e-06
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 123 LMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAGFD 182
L RL++ K L+LGT+ GYS L +A ALP GR++T E D + + L R A
Sbjct: 97 LARLIQAKK---ALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE-A 152
Query: 183 EHMVELIVGSSEDVIPCLRTQYQLSRADLVLL-AHRPRC---YLRDLQLLEAHALLPAGA 238
EH ++L + + + + L + D+ ++ A + C Y R LQLL +L
Sbjct: 153 EHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLR 212
Query: 239 TVLADHVLFP 248
+ VL P
Sbjct: 213 VLWRGKVLQP 222
>gi|18104993 protein tyrosine phosphatase, non-receptor type 6
isoform 3 [Homo sapiens]
Length = 624
Score = 33.1 bits (74), Expect = 0.29
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 89 HALPGDPGHILTTLDHWSSRCEYLSHMGPV 118
H +P +PG +L+ LD + R E L H GP+
Sbjct: 420 HGVPSEPGGVLSFLDQINQRQESLPHAGPI 449
>gi|18104989 protein tyrosine phosphatase, non-receptor type 6
isoform 1 [Homo sapiens]
Length = 595
Score = 33.1 bits (74), Expect = 0.29
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 89 HALPGDPGHILTTLDHWSSRCEYLSHMGPV 118
H +P +PG +L+ LD + R E L H GP+
Sbjct: 420 HGVPSEPGGVLSFLDQINQRQESLPHAGPI 449
>gi|18104991 protein tyrosine phosphatase, non-receptor type 6
isoform 2 [Homo sapiens]
Length = 597
Score = 33.1 bits (74), Expect = 0.29
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 89 HALPGDPGHILTTLDHWSSRCEYLSHMGPV 118
H +P +PG +L+ LD + R E L H GP+
Sbjct: 422 HGVPSEPGGVLSFLDQINQRQESLPHAGPI 451
>gi|216548382 WD repeat domain 47 isoform 3 [Homo sapiens]
Length = 919
Score = 31.6 bits (70), Expect = 0.86
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 89 HALPGDPGHILTTLDHWSSRCEYLSHMGPVKGQILMRLVEEKAPACVLELG-TYCGYSTL 147
HAL G GHIL L WS ++ G + R + + P+CV +G T+ G +
Sbjct: 749 HALSGHTGHIL-ALYTWSG---WMIASGSQDKTV--RFWDLRVPSCVRVVGTTFHGTGSA 802
Query: 148 LIARALPPGGRLLTVERD 165
+ + A+ P GRLL ++
Sbjct: 803 VASVAVDPSGRLLATGQE 820
>gi|216548378 WD repeat domain 47 isoform 1 [Homo sapiens]
Length = 927
Score = 31.6 bits (70), Expect = 0.86
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 89 HALPGDPGHILTTLDHWSSRCEYLSHMGPVKGQILMRLVEEKAPACVLELG-TYCGYSTL 147
HAL G GHIL L WS ++ G + R + + P+CV +G T+ G +
Sbjct: 757 HALSGHTGHIL-ALYTWSG---WMIASGSQDKTV--RFWDLRVPSCVRVVGTTFHGTGSA 810
Query: 148 LIARALPPGGRLLTVERD 165
+ + A+ P GRLL ++
Sbjct: 811 VASVAVDPSGRLLATGQE 828
>gi|216548347 WD repeat domain 47 isoform 2 [Homo sapiens]
Length = 920
Score = 31.6 bits (70), Expect = 0.86
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 89 HALPGDPGHILTTLDHWSSRCEYLSHMGPVKGQILMRLVEEKAPACVLELG-TYCGYSTL 147
HAL G GHIL L WS ++ G + R + + P+CV +G T+ G +
Sbjct: 750 HALSGHTGHIL-ALYTWSG---WMIASGSQDKTV--RFWDLRVPSCVRVVGTTFHGTGSA 803
Query: 148 LIARALPPGGRLLTVERD 165
+ + A+ P GRLL ++
Sbjct: 804 VASVAVDPSGRLLATGQE 821
>gi|90421313 cystic fibrosis transmembrane conductance regulator
[Homo sapiens]
Length = 1480
Score = 31.2 bits (69), Expect = 1.1
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 115 MGPVKGQILMRLVEEKAPACVLELGTYCGYSTLLIARALPPG-GRLLTVERDPRTAAVAE 173
+ P++ +LM L+ E +L+ +CG L++ G GR++ RD R ++E
Sbjct: 203 IAPLQVALLMGLIWE-----LLQASAFCGLGFLIVLALFQAGLGRMMMKYRDQRAGKISE 257
Query: 174 KLI 176
+L+
Sbjct: 258 RLV 260
>gi|239750123 PREDICTED: hypothetical protein XP_002347295 [Homo
sapiens]
Length = 194
Score = 30.4 bits (67), Expect = 1.9
Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 26/123 (21%)
Query: 2 GTPWRKRKGI------------AGPGLPDLSCALVLQP---RAQVGTMSPAI-ALAF-LP 44
G P R+R+G+ AGPGLP + V +P R GT P + ++ F P
Sbjct: 67 GAPRRRRRGLSLGGGARGGACGAGPGLP--APTWVRRPWSSRLSAGTAPPRVLSMTFSTP 124
Query: 45 LVVTLLVRYRHYFRLLVRTVLLRSLRDCLSG-------LRIEERAFSYVLTHALPGDPGH 97
+ V + + F +V + L + G R+ R S +TH LP PG
Sbjct: 125 VSVRPITAFTPSFPEMVTPLPLPASASHSLGPPTSVRMARLTARNKSCPVTHLLPSQPGR 184
Query: 98 ILT 100
LT
Sbjct: 185 FLT 187
>gi|154350241 brefeldin A-inhibited guanine nucleotide-exchange
protein 3 [Homo sapiens]
Length = 2177
Score = 30.0 bits (66), Expect = 2.5
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 164 RDPRTAAVAEKLIRLAGFDEHMVELIVGSSEDVIPCLRTQYQLSRADLVL 213
R RTAA++ KL++ D+H L + S E ++P L + + D L
Sbjct: 651 RSLRTAALSLKLLKNQEADQHSARLFIQSLEGLLPRLLSLSNVEEVDTAL 700
>gi|49472822 eukaryotic translation initiation factor 3, subunit 4
delta, 44kDa [Homo sapiens]
Length = 320
Score = 29.3 bits (64), Expect = 4.3
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 103 DHWSSRCEYLSHMGPVKGQILMRL 126
DHW++RC Y +GP++ ++ +L
Sbjct: 163 DHWTTRCPYKDTLGPMQKELAEQL 186
>gi|169214772 PREDICTED: similar to hCG1783157 [Homo sapiens]
Length = 538
Score = 28.1 bits (61), Expect = 9.5
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 60 LVRTVLLRSLRDCLSGLRIEERAFSYVLTH---ALPGDPGHILTTLDHWSSR 108
L++TVLL L +C S ++ + + +LPG+P +I T L +W +R
Sbjct: 265 LMKTVLLAKLNECSS---LDSERIEWAINQEGASLPGEPANI-TELRNWLTR 312
>gi|239751973 PREDICTED: hypothetical protein XP_002348052 [Homo
sapiens]
Length = 537
Score = 28.1 bits (61), Expect = 9.5
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 60 LVRTVLLRSLRDCLSGLRIEERAFSYVLTH---ALPGDPGHILTTLDHWSSR 108
L++TVLL L +C S ++ + + +LPG+P +I T L +W +R
Sbjct: 265 LMKTVLLAKLNECSS---LDSERIEWAINQEGASLPGEPANI-TELRNWLTR 312
>gi|239746455 PREDICTED: hypothetical protein XP_002344215 [Homo
sapiens]
Length = 537
Score = 28.1 bits (61), Expect = 9.5
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 60 LVRTVLLRSLRDCLSGLRIEERAFSYVLTH---ALPGDPGHILTTLDHWSSR 108
L++TVLL L +C S ++ + + +LPG+P +I T L +W +R
Sbjct: 265 LMKTVLLAKLNECSS---LDSERIEWAINQEGASLPGEPANI-TELRNWLTR 312
>gi|150010661 SEC14-like 5 [Homo sapiens]
Length = 696
Score = 28.1 bits (61), Expect = 9.5
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 121 QILMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAG 180
+++M E++ P C ++ + G L +R+ P G + VER R A +L+R
Sbjct: 17 ELVMAAYEKRFPTCP-QIPVFLGSEVLRESRS--PDGAVHVVERSCRLRVDAPRLLRKIA 73
Query: 181 FDEHMV 186
EH+V
Sbjct: 74 GVEHVV 79
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.142 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,403,427
Number of Sequences: 37866
Number of extensions: 560051
Number of successful extensions: 1332
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1309
Number of HSP's gapped (non-prelim): 24
length of query: 291
length of database: 18,247,518
effective HSP length: 101
effective length of query: 190
effective length of database: 14,423,052
effective search space: 2740379880
effective search space used: 2740379880
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.