Guide to the Human Genome
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Name: LRTOMT Sequence: fasta or formatted (291aa) NCBI GI: 223718159
Description:

leucine rich transmembrane and 0-methyltransferase domain containing isoform 4

Referenced in:

Catecholamines
Auditory and Vestibular Functions
Leucine-rich Repeat Family

Other entries for this name:
alt prot [192aa] leucine rich transmembrane and 0-methyltransferase domain contain...
alt prot [158aa] leucine rich transmembrane and 0-methyltransferase domain contain...
alt mRNA [291aa] leucine rich transmembrane and 0-methyltransferase domain contain...
alt prot [251aa] leucine rich transmembrane and 0-methyltransferase domain contain...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         28           2
 C cysteine            3.1          9           1
 D aspartate           4.1         12           1
 E glutamate           4.1         12           2
 F phenylalanine       2.4          7           1
 G glycine             7.9         23           2
 H histidine           3.8         11           2
 I isoleucine          3.8         11           1
 K lysine              2.4          7           1
 L leucine            17.2         50           2
 M methionine          1.7          5           1
 N asparagine          0.0          0           0
 P proline             7.2         21           2
 Q glutamine           2.7          8           1
 R arginine            9.3         27           1
 S serine              4.5         13           2
 T threonine           5.2         15           2
 V valine              6.5         19           2
 W tryptophan          0.7          2           1
 Y tyrosine            3.8         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich transmembrane and 0-methyltransferase ... 
LRTOMT                1.000   leucine rich transmembrane and 0-methyltransferase ...
LRTOMT                0.834   leucine rich transmembrane and 0-methyltransferase ...
COMT                  0.253   catechol-O-methyltransferase isoform MB-COMT 
COMT                  0.253   catechol-O-methyltransferase isoform MB-COMT 
COMT                  0.253   catechol-O-methyltransferase isoform MB-COMT 
COMT                  0.239   catechol-O-methyltransferase isoform S-COMT 
COMTD1                0.041   catechol-O-methyltransferase domain containing 1 [Ho...
PTPN6                 0.014   protein tyrosine phosphatase, non-receptor type 6 is...
PTPN6                 0.014   protein tyrosine phosphatase, non-receptor type 6 is...
PTPN6                 0.014   protein tyrosine phosphatase, non-receptor type 6 is...
WDR47                 0.012   WD repeat domain 47 isoform 3 
WDR47                 0.012   WD repeat domain 47 isoform 1 
WDR47                 0.012   WD repeat domain 47 isoform 2 
CFTR                  0.011   cystic fibrosis transmembrane conductance regulator ...
LOC100291249          0.009   PREDICTED: hypothetical protein XP_002347295 
KIAA1244              0.009   brefeldin A-inhibited guanine nucleotide-exchange p...
EIF3G                 0.007   eukaryotic translation initiation factor 3, subunit ...
LOC100131368          0.005   PREDICTED: similar to hCG1783157 
LOC100291521          0.005   PREDICTED: hypothetical protein XP_002348052 
LOC100289308          0.005   PREDICTED: hypothetical protein XP_002344215 
SEC14L5               0.005   SEC14-like 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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