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Search of human proteins with 223633957
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|223633957 proline-rich acidic protein 1 isoform 2 [Homo
sapiens]
(142 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|223633957 proline-rich acidic protein 1 isoform 2 [Homo sapiens] 303 2e-83
gi|223633959 proline-rich acidic protein 1 isoform 1 [Homo sapiens] 296 5e-81
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 33 0.10
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 33 0.10
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 33 0.10
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 33 0.10
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 33 0.10
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 33 0.10
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 33 0.10
gi|21361118 DNA-damage-inducible transcript 3 [Homo sapiens] 33 0.10
gi|134142062 acetyl-Coenzyme A carboxylase beta [Homo sapiens] 32 0.14
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 32 0.23
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 32 0.23
gi|239750425 PREDICTED: hypothetical protein XP_002347391 [Homo ... 30 0.52
gi|62988346 glutamate receptor, ionotropic, N-methyl-D-aspartate... 30 0.52
gi|239752405 PREDICTED: similar to cancer/testis antigen family ... 30 0.88
gi|187281517 cytosolic phosphoenolpyruvate carboxykinase 1 [Homo... 30 0.88
gi|58530845 zyxin [Homo sapiens] 30 0.88
gi|4508047 zyxin [Homo sapiens] 30 0.88
gi|113430055 PREDICTED: similar to cancer/testis antigen family ... 29 1.1
gi|4507161 SRY-box 11 [Homo sapiens] 29 1.1
gi|222831660 family with sequence similarity 171, member A2 [Hom... 29 1.5
gi|112799847 cardiac muscle ryanodine receptor [Homo sapiens] 29 1.5
gi|150170670 piccolo isoform 2 [Homo sapiens] 29 1.5
gi|150378539 piccolo isoform 1 [Homo sapiens] 29 1.5
gi|33457316 pleckstrin homology domain containing, family O memb... 29 1.5
gi|71274178 developing brain homeobox 1 [Homo sapiens] 29 1.5
gi|216548487 peptidyl arginine deiminase, type IV [Homo sapiens] 28 2.0
gi|24431975 hypothetical protein LOC26148 [Homo sapiens] 28 2.0
gi|226371764 transcription factor 7-like 2 isoform 1 [Homo sapiens] 28 2.6
>gi|223633957 proline-rich acidic protein 1 isoform 2 [Homo sapiens]
Length = 142
Score = 303 bits (777), Expect = 2e-83
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MRRLLLVTSLVVVLLWEAGAVPAPKVPIKMQVKHWPSEQDPEKAWGARVVEPPEKDDQLV 60
MRRLLLVTSLVVVLLWEAGAVPAPKVPIKMQVKHWPSEQDPEKAWGARVVEPPEKDDQLV
Sbjct: 1 MRRLLLVTSLVVVLLWEAGAVPAPKVPIKMQVKHWPSEQDPEKAWGARVVEPPEKDDQLV 60
Query: 61 VLFPVQKPKLLTTEEKPRGTKAWMETEDTLGHVLSPEPDHDSLYHPPPEEDQGEERPRLW 120
VLFPVQKPKLLTTEEKPRGTKAWMETEDTLGHVLSPEPDHDSLYHPPPEEDQGEERPRLW
Sbjct: 61 VLFPVQKPKLLTTEEKPRGTKAWMETEDTLGHVLSPEPDHDSLYHPPPEEDQGEERPRLW 120
Query: 121 VMPNHQVLLGPEEDQDHIYHPQ 142
VMPNHQVLLGPEEDQDHIYHPQ
Sbjct: 121 VMPNHQVLLGPEEDQDHIYHPQ 142
>gi|223633959 proline-rich acidic protein 1 isoform 1 [Homo sapiens]
Length = 151
Score = 296 bits (757), Expect = 5e-81
Identities = 142/151 (94%), Positives = 142/151 (94%), Gaps = 9/151 (5%)
Query: 1 MRRLLLVTSLVVVLLWEAGAVPAPKVPIKMQVKHWPSEQDPEKAWGARVVEPPEKDDQLV 60
MRRLLLVTSLVVVLLWEAGAVPAPKVPIKMQVKHWPSEQDPEKAWGARVVEPPEKDDQLV
Sbjct: 1 MRRLLLVTSLVVVLLWEAGAVPAPKVPIKMQVKHWPSEQDPEKAWGARVVEPPEKDDQLV 60
Query: 61 VLFPVQKPKLLTTEEKPR---------GTKAWMETEDTLGHVLSPEPDHDSLYHPPPEED 111
VLFPVQKPKLLTTEEKPR GTKAWMETEDTLGHVLSPEPDHDSLYHPPPEED
Sbjct: 61 VLFPVQKPKLLTTEEKPRGQGRGPILPGTKAWMETEDTLGHVLSPEPDHDSLYHPPPEED 120
Query: 112 QGEERPRLWVMPNHQVLLGPEEDQDHIYHPQ 142
QGEERPRLWVMPNHQVLLGPEEDQDHIYHPQ
Sbjct: 121 QGEERPRLWVMPNHQVLLGPEEDQDHIYHPQ 151
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 32.7 bits (73), Expect = 0.10
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 46 GARVVEPPEKDDQLVVLFPVQKPKLLTTEEKPRG--TKAWMETEDTLGHVLSPEPDHDSL 103
G + E + D V + V+ K+LT + P+ +AW+E G+ ++P D +
Sbjct: 603 GEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNP--GYEVAPRSDSEES 660
Query: 104 YHPPPEEDQGEERPRLW---VMPNHQVLLGPEEDQDHI 138
EE++ EE+P+ +P + P+ D D +
Sbjct: 661 GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDV 698
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 32.7 bits (73), Expect = 0.10
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 46 GARVVEPPEKDDQLVVLFPVQKPKLLTTEEKPRG--TKAWMETEDTLGHVLSPEPDHDSL 103
G + E + D V + V+ K+LT + P+ +AW+E G+ ++P D +
Sbjct: 603 GEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNP--GYEVAPRSDSEES 660
Query: 104 YHPPPEEDQGEERPRLW---VMPNHQVLLGPEEDQDHI 138
EE++ EE+P+ +P + P+ D D +
Sbjct: 661 GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDV 698
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 32.7 bits (73), Expect = 0.10
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 46 GARVVEPPEKDDQLVVLFPVQKPKLLTTEEKPRG--TKAWMETEDTLGHVLSPEPDHDSL 103
G + E + D V + V+ K+LT + P+ +AW+E G+ ++P D +
Sbjct: 603 GEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNP--GYEVAPRSDSEES 660
Query: 104 YHPPPEEDQGEERPRLW---VMPNHQVLLGPEEDQDHI 138
EE++ EE+P+ +P + P+ D D +
Sbjct: 661 GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDV 698
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 32.7 bits (73), Expect = 0.10
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 46 GARVVEPPEKDDQLVVLFPVQKPKLLTTEEKPRG--TKAWMETEDTLGHVLSPEPDHDSL 103
G + E + D V + V+ K+LT + P+ +AW+E G+ ++P D +
Sbjct: 603 GEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNP--GYEVAPRSDSEES 660
Query: 104 YHPPPEEDQGEERPRLW---VMPNHQVLLGPEEDQDHI 138
EE++ EE+P+ +P + P+ D D +
Sbjct: 661 GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDV 698
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 32.7 bits (73), Expect = 0.10
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 46 GARVVEPPEKDDQLVVLFPVQKPKLLTTEEKPRG--TKAWMETEDTLGHVLSPEPDHDSL 103
G + E + D V + V+ K+LT + P+ +AW+E G+ ++P D +
Sbjct: 603 GEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNP--GYEVAPRSDSEES 660
Query: 104 YHPPPEEDQGEERPRLW---VMPNHQVLLGPEEDQDHI 138
EE++ EE+P+ +P + P+ D D +
Sbjct: 661 GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDV 698
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 32.7 bits (73), Expect = 0.10
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 46 GARVVEPPEKDDQLVVLFPVQKPKLLTTEEKPRG--TKAWMETEDTLGHVLSPEPDHDSL 103
G + E + D V + V+ K+LT + P+ +AW+E G+ ++P D +
Sbjct: 603 GEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNP--GYEVAPRSDSEES 660
Query: 104 YHPPPEEDQGEERPRLW---VMPNHQVLLGPEEDQDHI 138
EE++ EE+P+ +P + P+ D D +
Sbjct: 661 GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDV 698
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 32.7 bits (73), Expect = 0.10
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 46 GARVVEPPEKDDQLVVLFPVQKPKLLTTEEKPRG--TKAWMETEDTLGHVLSPEPDHDSL 103
G + E + D V + V+ K+LT + P+ +AW+E G+ ++P D +
Sbjct: 603 GEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNP--GYEVAPRSDSEES 660
Query: 104 YHPPPEEDQGEERPRLW---VMPNHQVLLGPEEDQDHI 138
EE++ EE+P+ +P + P+ D D +
Sbjct: 661 GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDV 698
>gi|21361118 DNA-damage-inducible transcript 3 [Homo sapiens]
Length = 169
Score = 32.7 bits (73), Expect = 0.10
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 46 GARVVEPPEKDDQLVVLFPVQKPKLLT--TEEKPRGTKAWMETEDTLGHVLSPEPDHDSL 103
G V PP +++ +F P L TEE+P E T SP+ SL
Sbjct: 35 GGTYVSPPGNEEEESKIFTTLDPASLAWLTEEEPEPA----EVTSTSQSPHSPDSSQSSL 90
Query: 104 YHPPPEEDQGEERPR 118
EEDQG R R
Sbjct: 91 AQEEEEEDQGRTRKR 105
>gi|134142062 acetyl-Coenzyme A carboxylase beta [Homo sapiens]
Length = 2458
Score = 32.3 bits (72), Expect = 0.14
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 73 TEEKPRGTKAWMETEDTLGHVLSPEPDHDSLYHPPPEEDQGEERPRLWVMPNHQVLLGPE 132
T+E P G + D + S P D LY E + E P+++V N +G
Sbjct: 1779 TQEYPEGRDVIVIGNDITFRIGSFGPGEDLLYLRASEMARAEGIPKIYVAANSGARIGMA 1838
Query: 133 EDQDHIYH 140
E+ H++H
Sbjct: 1839 EEIKHMFH 1846
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 31.6 bits (70), Expect = 0.23
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 14 LLWEAGAVPAPKVPIKMQVKHWPSEQDPEKAW------GARVVEPPEKDDQLVVLFPVQK 67
L+WE A K K + + +E++ E G + E + D V + +
Sbjct: 543 LVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTET 602
Query: 68 PKLLTTEEKPRGTK--AWMETEDTLGHVLSPEPDHDSLYHPPPEEDQGEERPRLWVMPNH 125
K+L E P+ ++ AW+E G+ ++P D + EED+ EE R
Sbjct: 603 GKVLFGPEAPKASQLDAWLEMNP--GYEVAPRSDSEESDSDYEEEDEEEESSR--QETEE 658
Query: 126 QVLLGPEEDQ 135
++LL P ++
Sbjct: 659 KILLDPNSEE 668
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 31.6 bits (70), Expect = 0.23
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 14 LLWEAGAVPAPKVPIKMQVKHWPSEQDPEKAW------GARVVEPPEKDDQLVVLFPVQK 67
L+WE A K K + + +E++ E G + E + D V + +
Sbjct: 543 LVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTET 602
Query: 68 PKLLTTEEKPRGTK--AWMETEDTLGHVLSPEPDHDSLYHPPPEEDQGEERPRLWVMPNH 125
K+L E P+ ++ AW+E G+ ++P D + EED+ EE R
Sbjct: 603 GKVLFGPEAPKASQLDAWLEMNP--GYEVAPRSDSEESDSDYEEEDEEEESSR--QETEE 658
Query: 126 QVLLGPEEDQ 135
++LL P ++
Sbjct: 659 KILLDPNSEE 668
>gi|239750425 PREDICTED: hypothetical protein XP_002347391 [Homo
sapiens]
Length = 341
Score = 30.4 bits (67), Expect = 0.52
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 60 VVLFPVQKPKLLTTEEKPRGTKAWMETEDTLGHVLSPEPDHDSLYHPPPEEDQGEE-RPR 118
VVL P+ L + + +W D H L P+P + HP P+ED EE R R
Sbjct: 246 VVLHPIPSGALAIPVAR---SLSWPVYRDPASHPLLPQP----VLHPEPQEDSSEECRRR 298
Query: 119 LWVMPNHQVL 128
+ P VL
Sbjct: 299 INPQPTVGVL 308
>gi|62988346 glutamate receptor, ionotropic, N-methyl-D-aspartate 3B
[Homo sapiens]
Length = 1043
Score = 30.4 bits (67), Expect = 0.52
Identities = 18/68 (26%), Positives = 27/68 (39%)
Query: 69 KLLTTEEKPRGTKAWMETEDTLGHVLSPEPDHDSLYHPPPEEDQGEERPRLWVMPNHQVL 128
K+ + PRG AW L EP S PPP+ Q + R+ + H +
Sbjct: 369 KVWSLRRDPRGAPAWATVGSWRDGQLDLEPGGASARPPPPQGAQVWPKLRVVTLLEHPFV 428
Query: 129 LGPEEDQD 136
+ D+D
Sbjct: 429 FARDPDED 436
>gi|239752405 PREDICTED: similar to cancer/testis antigen family
147, member B1 [Homo sapiens]
Length = 290
Score = 29.6 bits (65), Expect = 0.88
Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 13/102 (12%)
Query: 14 LLWEAGAVPAPKVPIKM-------------QVKHWPSEQDPEKAWGARVVEPPEKDDQLV 60
LL EA VP P+VP + + P+E+ E+ E P K++
Sbjct: 179 LLQEAALVPEPEVPADLAEMAREPAEEPTEEASEKPTEEAAEEELSEEAAEEPRKEESAA 238
Query: 61 VLFPVQKPKLLTTEEKPRGTKAWMETEDTLGHVLSPEPDHDS 102
Q+P K + K E +D G E + D+
Sbjct: 239 EEESAQEPATQEEVTKYQHEKWDEEAQDAAGKEEKEEKEKDA 280
>gi|187281517 cytosolic phosphoenolpyruvate carboxykinase 1 [Homo
sapiens]
Length = 622
Score = 29.6 bits (65), Expect = 0.88
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 11 VVVLLWEAGAVPAPKVPIKMQVKHWPSEQDPEKAWGAR 48
V+V + VP PK + Q+ W SE+D EKA+ AR
Sbjct: 93 VIVTQEQRDTVPIPKTGLS-QLGRWMSEEDFEKAFNAR 129
>gi|58530845 zyxin [Homo sapiens]
Length = 572
Score = 29.6 bits (65), Expect = 0.88
Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 21/112 (18%)
Query: 19 GAVPAPKVPIKMQVKHWPSEQDPEKAWGAR--------VVEPPEKDDQLVVLFPVQKPKL 70
G V APK + P + +P A GA+ + PP +D FP+ P L
Sbjct: 27 GPVVAPKPKVN---PFRPGDSEPPPAPGAQRAQMGRVGEIPPPPPED-----FPLPPPPL 78
Query: 71 LTTEEKPRGTK--AWMETEDTLGHVLSPEPDHDSLYH---PPPEEDQGEERP 117
+ G A+ + P P + ++ PPPEE+ G E P
Sbjct: 79 AGDGDDAEGALGGAFPPPPPPIEESFPPAPLEEEIFPSPPPPPEEEGGPEAP 130
>gi|4508047 zyxin [Homo sapiens]
Length = 572
Score = 29.6 bits (65), Expect = 0.88
Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 21/112 (18%)
Query: 19 GAVPAPKVPIKMQVKHWPSEQDPEKAWGAR--------VVEPPEKDDQLVVLFPVQKPKL 70
G V APK + P + +P A GA+ + PP +D FP+ P L
Sbjct: 27 GPVVAPKPKVN---PFRPGDSEPPPAPGAQRAQMGRVGEIPPPPPED-----FPLPPPPL 78
Query: 71 LTTEEKPRGTK--AWMETEDTLGHVLSPEPDHDSLYH---PPPEEDQGEERP 117
+ G A+ + P P + ++ PPPEE+ G E P
Sbjct: 79 AGDGDDAEGALGGAFPPPPPPIEESFPPAPLEEEIFPSPPPPPEEEGGPEAP 130
>gi|113430055 PREDICTED: similar to cancer/testis antigen family
147, member B1 isoform 1 [Homo sapiens]
Length = 284
Score = 29.3 bits (64), Expect = 1.1
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 14 LLWEAGAVPAPKVPIKM-QVKHWPSEQDPEKAWGARVVEPPEKDD 57
LL EA VP P+VP + ++ P+E+ E+ E P K++
Sbjct: 180 LLQEAALVPEPEVPADLAEMAREPAEEPAEEELAEEAAEEPAKEE 224
>gi|4507161 SRY-box 11 [Homo sapiens]
Length = 441
Score = 29.3 bits (64), Expect = 1.1
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 28 IKMQVKHWPSEQDPEKAWGARVVEPPEKDDQLVVLFPVQK----PKLLTTEEKPRGTKAW 83
+++Q+K P E+D E + P ++ QL+ + V K P L ++ E P G +
Sbjct: 235 LQLQIKQEPDEEDEEPPHQQLLQPPGQQPSQLLRRYNVAKVPASPTLSSSAESPEGASLY 294
Query: 84 ME 85
E
Sbjct: 295 DE 296
>gi|222831660 family with sequence similarity 171, member A2 [Homo
sapiens]
Length = 826
Score = 28.9 bits (63), Expect = 1.5
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 4 LLLVTSLVVVLLWEAGAVPAPKVPIKMQVKHWPSEQDPEKAWGARVVEPPEKDDQLVVLF 63
L+L LV +LL GA P V + + P + W + P Q + F
Sbjct: 132 LILYEDLVHILLGSPGARSQPLVQFQRRAARLPVSSTYSQLWASLT---PASTQQEMRAF 188
Query: 64 PVQKPKLLTTEEKPRGTKAWME 85
P L TE G +W+E
Sbjct: 189 PA----FLGTEASSSGNGSWLE 206
>gi|112799847 cardiac muscle ryanodine receptor [Homo sapiens]
Length = 4967
Score = 28.9 bits (63), Expect = 1.5
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 11/52 (21%)
Query: 81 KAWMETEDTLGHVLSPEPDHDSLYHP---PPEEDQGEERPRLWVMPNHQVLL 129
K+W+ETE+ H + D L P PPEED+G +R V P HQ++L
Sbjct: 3626 KSWIETEE---HYFEDKLIED-LAKPGAEPPEEDEGTKR----VDPLHQLIL 3669
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 28.9 bits (63), Expect = 1.5
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 17 EAGAVPAPKVPIKMQVKHWPSEQDPEKAWGARVVE--------PPEKDDQLVVLFPVQK- 67
+A PA +P+K + K +E+ KA A V+ PP KD + + P +
Sbjct: 985 QAPPAPAKSIPVKKETKAPAAEKLEPKAEQAPTVKRTETEKKPPPIKDSKSLTAEPQKAV 1044
Query: 68 -PKLLTTEEKPRGTKAWMETEDTLG 91
P L KP T +TE +G
Sbjct: 1045 LPTKLEKSPKPESTCPLCKTELNIG 1069
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 28.9 bits (63), Expect = 1.5
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 17 EAGAVPAPKVPIKMQVKHWPSEQDPEKAWGARVVE--------PPEKDDQLVVLFPVQK- 67
+A PA +P+K + K +E+ KA A V+ PP KD + + P +
Sbjct: 985 QAPPAPAKSIPVKKETKAPAAEKLEPKAEQAPTVKRTETEKKPPPIKDSKSLTAEPQKAV 1044
Query: 68 -PKLLTTEEKPRGTKAWMETEDTLG 91
P L KP T +TE +G
Sbjct: 1045 LPTKLEKSPKPESTCPLCKTELNIG 1069
>gi|33457316 pleckstrin homology domain containing, family O member
2 [Homo sapiens]
Length = 490
Score = 28.9 bits (63), Expect = 1.5
Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 62 LFPVQKPKLL--TTE-----EKPRGTKAWMETEDTLGHVLSPEPDHDSLYHPPPEEDQGE 114
L P KP L TT E P G +A T + +SPE DS P EED G
Sbjct: 203 LMPPTKPFLAPETTSPGDRVETPVGERA--PTPVSASSEVSPESQEDS--ETPAEEDSGS 258
Query: 115 ERPRLWVMPN 124
E+P V+P+
Sbjct: 259 EQPPNSVLPD 268
>gi|71274178 developing brain homeobox 1 [Homo sapiens]
Length = 382
Score = 28.9 bits (63), Expect = 1.5
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 87 EDTLGHVLSPEPDHDSLYHPPPEEDQGEERPRLWVMPNHQVLLGPEEDQDHIYHPQ 142
E TL L+P PD + P ++ EE P P+H++ D H+ P+
Sbjct: 291 EQTLPTKLNPHPDLSDVGQKGPGNEEEEEGPG---SPSHRLAYHASSDPQHLRDPR 343
>gi|216548487 peptidyl arginine deiminase, type IV [Homo sapiens]
Length = 663
Score = 28.5 bits (62), Expect = 2.0
Identities = 15/72 (20%), Positives = 30/72 (41%)
Query: 36 PSEQDPEKAWGARVVEPPEKDDQLVVLFPVQKPKLLTTEEKPRGTKAWMETEDTLGHVLS 95
P+ Q P++ + + E + + L K KL E+ WM+ E +G++ +
Sbjct: 300 PNTQPPQEVYACSIFENEDFLKSVTTLAMKAKCKLTICPEEENMDDQWMQDEMEIGYIQA 359
Query: 96 PEPDHDSLYHPP 107
P ++ P
Sbjct: 360 PHKTLPVVFDSP 371
>gi|24431975 hypothetical protein LOC26148 [Homo sapiens]
Length = 1247
Score = 28.5 bits (62), Expect = 2.0
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 21 VPAPKVPIKMQVKHWPSEQDPEKAWGARVVEPPEKDDQLVVLFPVQKPKLLTTEEKPRGT 80
+PAP+ + +Q+ P E +PE+ + E + Q+P++ T+ KP +
Sbjct: 238 IPAPRHTVDVQL---PREDNPEEP-SKEITSHEEGGGDVSPRKEPQEPEVCPTKIKPNLS 293
Query: 81 KAWMETEDTLGHVLSPEPDHDSLYHPPPEEDQGE 114
+ E T ++ P P H PEED E
Sbjct: 294 SSPRSEETTASSLVWPLPAH------LPEEDLPE 321
>gi|226371764 transcription factor 7-like 2 isoform 1 [Homo sapiens]
Length = 602
Score = 28.1 bits (61), Expect = 2.6
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 50 VEPPEKDDQLVVLFPVQKPKLLTTEEKPRGTKAWMETEDTLGHVLSPEP-DHDSLYHPPP 108
+ PP D L+ P P LL + PR K+ E L L P+P H S+ PPP
Sbjct: 480 LSPPSSDGSLLDS-PPPSPNLLGSP--PRDAKSQTEQTQPLSLSLKPDPLAHLSMMPPPP 536
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.135 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,685,406
Number of Sequences: 37866
Number of extensions: 429089
Number of successful extensions: 1065
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1028
Number of HSP's gapped (non-prelim): 77
length of query: 142
length of database: 18,247,518
effective HSP length: 92
effective length of query: 50
effective length of database: 14,763,846
effective search space: 738192300
effective search space used: 738192300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.