Search of human proteins with 222144309

Search of human proteins with 222144309

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|222144309 Rab acceptor 1 [Homo sapiens]
         (185 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|222144309 Rab acceptor 1 [Homo sapiens]                            372   e-104
gi|6005794 PRA1 domain family, member 2 [Homo sapiens]                 38   0.004
gi|5453704 ADP-ribosylation-like factor 6 interacting protein 5 ...    37   0.013
gi|4885329 free fatty acid receptor 3 [Homo sapiens]                   29   2.0  
gi|237858660 olfactory receptor, family 6, subfamily P, member 1...    28   4.5  
gi|239756701 PREDICTED: similar to hCG1986016 [Homo sapiens]           28   5.9  
gi|239751194 PREDICTED: hypothetical protein XP_002347745 [Homo ...    28   5.9  
gi|239745684 PREDICTED: hypothetical protein XP_002343515 [Homo ...    28   5.9  
gi|157738677 basement membrane-induced gene isoform 3 [Homo sapi...    28   5.9  
gi|170671732 melanocortin 3 receptor [Homo sapiens]                    27   7.7  
gi|21362030 translocase of outer mitochondrial membrane 40 homol...    27   7.7  

>gi|222144309 Rab acceptor 1 [Homo sapiens]
          Length = 185

 Score =  372 bits (956), Expect = e-104
 Identities = 185/185 (100%), Positives = 185/185 (100%)

Query: 1   MAAQKDQQKDAEAEGLSGTTLLPKLIPSGAGREWLERRRATIRPWSTFVDQQRFSRPRNL 60
           MAAQKDQQKDAEAEGLSGTTLLPKLIPSGAGREWLERRRATIRPWSTFVDQQRFSRPRNL
Sbjct: 1   MAAQKDQQKDAEAEGLSGTTLLPKLIPSGAGREWLERRRATIRPWSTFVDQQRFSRPRNL 60

Query: 61  GELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLESKLV 120
           GELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLESKLV
Sbjct: 61  GELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLESKLV 120

Query: 121 LFGREVSPAHQYALAGGISFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAVDGEEL 180
           LFGREVSPAHQYALAGGISFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAVDGEEL
Sbjct: 121 LFGREVSPAHQYALAGGISFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAVDGEEL 180

Query: 181 QMEPV 185
           QMEPV
Sbjct: 181 QMEPV 185


>gi|6005794 PRA1 domain family, member 2 [Homo sapiens]
          Length = 178

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 64  CQRLVRNVEYYQSNYVFVF-LGLILYCVVTSPMLLVALAVFFGACYILYLRTLESKLVLF 122
           C R++ N+ YYQ+NY+  F +GL L   V     L++  V   A  +L         V  
Sbjct: 34  CHRVINNLLYYQTNYLLCFGIGLALAGYVRPLHTLLSALVVAVALGVLVWAAETRAAVRR 93

Query: 123 GREVSPAHQYALAGGISFPFFWLAGAGSAVFWVLGATLVVIGSHAA 168
            R   PA   A    +     W+AG      + +   +++I  HA+
Sbjct: 94  CRRSHPAACLAAVLAVGLLVLWVAGGACTFLFSIAGPVLLILVHAS 139


>gi|5453704 ADP-ribosylation-like factor 6 interacting protein 5
           [Homo sapiens]
          Length = 188

 Score = 36.6 bits (83), Expect = 0.013
 Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 6/151 (3%)

Query: 40  ATIRPWSTFVD-QQRFSRP--RNLGELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPML 96
           A +R W  F     RF+RP  R++ +   R+V N+ YYQ+NY+ V   +I      SP  
Sbjct: 6   APLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISIVGFLSPFN 65

Query: 97  LVALAVFFGACYILYLRTLESKLVLFGREVSPAHQYALAGGISFPFFWLAGAGSAVFWVL 156
           ++   +     +  ++    +K VL   +      + +   ++  +F ++  G  + +V 
Sbjct: 66  MILGGIVVVLVFTGFVWAAHNKDVLRRMKKRYPTTFVMVVMLA-SYFLISMFGGVMVFVF 124

Query: 157 GAT--LVVIGSHAAFHQIEAVDGEELQMEPV 185
           G T  L+++  HA+       +  E +ME +
Sbjct: 125 GITFPLLLMFIHASLRLRNLKNKLENKMEGI 155


>gi|4885329 free fatty acid receptor 3 [Homo sapiens]
          Length = 346

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 9/76 (11%)

Query: 73  YYQSNYVFVFLGLILYCVVTSPMLLVALAVFFG-------ACYILYLRTLESKLVLFGRE 125
           Y+  N+ FVF   +L  +V  P+ L+AL VF G       A  +L L    S L+L    
Sbjct: 9   YFSGNHWFVFSVYLLTFLVGLPLNLLALVVFVGKLQRRPVAVDVLLLNLTASDLLLL--L 66

Query: 126 VSPAHQYALAGGISFP 141
             P      A G+ +P
Sbjct: 67  FLPFRMVEAANGMHWP 82


>gi|237858660 olfactory receptor, family 6, subfamily P, member 1
           [Homo sapiens]
          Length = 317

 Score = 28.1 bits (61), Expect = 4.5
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 92  TSPMLLVALAVFFGACYILYLRTLESKLVLFGREVSPA---HQYALAGGISFPFFW 144
           T+P L + L V F A Y+L L  LE+ L++F   ++P+     Y   G +SF   W
Sbjct: 19  TTPPLQLLLFVLFFAIYLLTL--LENALIVFTIWLAPSLHRPMYFFLGHLSFLELW 72


>gi|239756701 PREDICTED: similar to hCG1986016 [Homo sapiens]
          Length = 325

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 15  GLSGTTLLPKLIPSGAGR 32
           GL G+ LLP L+P+G GR
Sbjct: 235 GLQGSRLLPDLLPTGEGR 252


>gi|239751194 PREDICTED: hypothetical protein XP_002347745 [Homo
           sapiens]
          Length = 325

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 15  GLSGTTLLPKLIPSGAGR 32
           GL G+ LLP L+P+G GR
Sbjct: 235 GLQGSRLLPDLLPTGEGR 252


>gi|239745684 PREDICTED: hypothetical protein XP_002343515 [Homo
           sapiens]
          Length = 368

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 15  GLSGTTLLPKLIPSGAGR 32
           GL G+ LLP L+P+G GR
Sbjct: 278 GLQGSRLLPDLLPTGEGR 295


>gi|157738677 basement membrane-induced gene isoform 3 [Homo
           sapiens]
          Length = 643

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 11/119 (9%)

Query: 3   AQKDQQKDAEAEGLSGT-TLLPKLIPSGAGREWLERRRATIRPWSTFVDQQRFSRPRNLG 61
           A +D++++ + E  S    LLP   P     E  + RR ++   +      +FS P  + 
Sbjct: 402 AGEDEEEECKEEAESPERVLLPFHFPGSFVEEMSDSRRYSLADLTA-----QFSLPCEV- 455

Query: 62  ELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLESKLV 120
               ++V     + ++ +  FLGL L   +T P L+V+L    G C+ +  R L+  +V
Sbjct: 456 ----KVVAKDTSHPTDPLTSFLGLRLEEKITEPFLVVSLDSEPGMCFEIPPRWLDLTVV 510


>gi|170671732 melanocortin 3 receptor [Homo sapiens]
          Length = 323

 Score = 27.3 bits (59), Expect = 7.7
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 78  YVFVFLGLILYCVVT---SPMLLVALAVFFGACYILYLRTLESKLVL 121
           YV +F  L  + ++T   +  L+VA+ V  G C ++++   ESK+V+
Sbjct: 143 YVTIFYALRYHSIMTVRKALTLIVAIWVCCGVCGVVFIVYSESKMVI 189


>gi|21362030 translocase of outer mitochondrial membrane 40
           homolog-like [Homo sapiens]
          Length = 308

 Score = 27.3 bits (59), Expect = 7.7
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 111 YLRTLESKLVLFGREVSPAHQYALAGGISFPFFWLAGAGSAVFWVLGATLVVIGSHAAFH 170
           +L++L  +LVL G  V     Y    G       LAG  SAV WV    +   G+HA+++
Sbjct: 168 FLQSLTHRLVLGGELV-----YHRRPGEEGAILTLAGKYSAVHWVATLNVGSGGAHASYY 222


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.139    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,576,979
Number of Sequences: 37866
Number of extensions: 268306
Number of successful extensions: 877
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 871
Number of HSP's gapped (non-prelim): 11
length of query: 185
length of database: 18,247,518
effective HSP length: 96
effective length of query: 89
effective length of database: 14,612,382
effective search space: 1300501998
effective search space used: 1300501998
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.