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Search of human proteins with 11464975
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11464975 elongation of very long chain fatty acids-like 5
[Homo sapiens]
(299 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11464975 elongation of very long chain fatty acids-like 5 [Ho... 640 0.0
gi|157388945 elongation of very long chain fatty acids-like 2 [H... 368 e-102
gi|12232379 elongation of very long chain fatty acids-like 4 [Ho... 249 3e-66
gi|13489093 elongation of very long chain fatty acids-like 1 [Ho... 181 5e-46
gi|157388949 elongation of very long chain fatty acids-like 7 [H... 179 3e-45
gi|157388947 elongation of very long chain fatty acids-like 7 [H... 179 3e-45
gi|23097310 elongation of very long chain fatty acids like 3 [Ho... 83 3e-16
gi|195539343 elongation of very long chain fatty acids-like 6 [H... 74 1e-13
gi|13129088 elongation of very long chain fatty acids-like 6 [Ho... 74 1e-13
gi|134254450 patched isoform S [Homo sapiens] 32 0.52
gi|134254435 patched isoform S [Homo sapiens] 32 0.52
gi|134254468 patched isoform S [Homo sapiens] 32 0.52
gi|134254452 patched isoform S [Homo sapiens] 32 0.52
gi|134254432 patched isoform L' [Homo sapiens] 32 0.52
gi|134254466 patched isoform M [Homo sapiens] 32 0.52
gi|134254446 patched isoform L [Homo sapiens] 32 0.52
gi|212720630 transmembrane protein 120B [Homo sapiens] 31 1.5
gi|14424433 ATPase, class V, type 10A [Homo sapiens] 30 2.6
gi|29789379 sphingomyelin synthase 1 [Homo sapiens] 29 4.4
gi|157074214 potassium channel, subfamily U, member 1 [Homo sapi... 29 4.4
gi|52353282 olfactory receptor, family 7, subfamily D, member 4 ... 29 5.8
gi|52218826 olfactory receptor, family 1, subfamily J, member 4 ... 29 5.8
gi|4505463 contactin associated protein 1 precursor [Homo sapiens] 28 9.8
gi|13994300 transmembrane protein 120A [Homo sapiens] 28 9.8
gi|170932505 neuromedin U receptor 2 [Homo sapiens] 28 9.8
>gi|11464975 elongation of very long chain fatty acids-like 5 [Homo
sapiens]
Length = 299
Score = 640 bits (1651), Expect = 0.0
Identities = 299/299 (100%), Positives = 299/299 (100%)
Query: 1 MEHFDASLSTYFKALLGPRDTRVKGWFLLDNYIPTFICSVIYLLIVWLGPKYMRNKQPFS 60
MEHFDASLSTYFKALLGPRDTRVKGWFLLDNYIPTFICSVIYLLIVWLGPKYMRNKQPFS
Sbjct: 1 MEHFDASLSTYFKALLGPRDTRVKGWFLLDNYIPTFICSVIYLLIVWLGPKYMRNKQPFS 60
Query: 61 CRGILVVYNLGLTLLSLYMFCELVTGVWEGKYNFFCQGTRTAGESDMKIIRVLWWYYFSK 120
CRGILVVYNLGLTLLSLYMFCELVTGVWEGKYNFFCQGTRTAGESDMKIIRVLWWYYFSK
Sbjct: 61 CRGILVVYNLGLTLLSLYMFCELVTGVWEGKYNFFCQGTRTAGESDMKIIRVLWWYYFSK 120
Query: 121 LIEFMDTFFFILRKNNHQITVLHVYHHASMLNIWWFVMNWVPCGHSYFGATLNSFIHVLM 180
LIEFMDTFFFILRKNNHQITVLHVYHHASMLNIWWFVMNWVPCGHSYFGATLNSFIHVLM
Sbjct: 121 LIEFMDTFFFILRKNNHQITVLHVYHHASMLNIWWFVMNWVPCGHSYFGATLNSFIHVLM 180
Query: 181 YSYYGLSSVPSMRPYLWWKKYITQGQLLQFVLTIIQTSCGVIWPCTFPLGWLYFQIGYMI 240
YSYYGLSSVPSMRPYLWWKKYITQGQLLQFVLTIIQTSCGVIWPCTFPLGWLYFQIGYMI
Sbjct: 181 YSYYGLSSVPSMRPYLWWKKYITQGQLLQFVLTIIQTSCGVIWPCTFPLGWLYFQIGYMI 240
Query: 241 SLIALFTNFYIQTYNKKGASRRKDHLKDHQNGSMAAVNGHTNSFSPLENNVKPRKLRKD 299
SLIALFTNFYIQTYNKKGASRRKDHLKDHQNGSMAAVNGHTNSFSPLENNVKPRKLRKD
Sbjct: 241 SLIALFTNFYIQTYNKKGASRRKDHLKDHQNGSMAAVNGHTNSFSPLENNVKPRKLRKD 299
>gi|157388945 elongation of very long chain fatty acids-like 2 [Homo
sapiens]
Length = 296
Score = 368 bits (944), Expect = e-102
Identities = 168/298 (56%), Positives = 210/298 (70%), Gaps = 7/298 (2%)
Query: 1 MEH---FDASLSTYFKALLGPRDTRVKGWFLLDNYIPTFICSVIYLLIVWLGPKYMRNKQ 57
MEH FD ++ + + GPRD+RV+GWF+LD+Y+PTF +V+YLL +WLG KYM+N+
Sbjct: 1 MEHLKAFDDEINAFLDNMFGPRDSRVRGWFMLDSYLPTFFLTVMYLLSIWLGNKYMKNRP 60
Query: 58 PFSCRGILVVYNLGLTLLSLYMFCELVTGVWEGKYNFFCQGTRTAGESDMKIIRVLWWYY 117
S RGIL +YNLG+TLLS YM EL+ WEG YN CQ +AGE+D+++ +VLWWYY
Sbjct: 61 ALSLRGILTLYNLGITLLSAYMLAELILSTWEGGYNLQCQDLTSAGEADIRVAKVLWWYY 120
Query: 118 FSKLIEFMDTFFFILRKNNHQITVLHVYHHASMLNIWWFVMNWVPCGHSYFGATLNSFIH 177
FSK +EF+DT FF+LRK QIT LHVYHHASM NIWW V+NW+PCG S+FG TLNSFIH
Sbjct: 121 FSKSVEFLDTIFFVLRKKTSQITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSFIH 180
Query: 178 VLMYSYYGLSSVPSMRPYLWWKKYITQGQLLQFVLTIIQTSCGVIWPCTFPLGWLYFQIG 237
+LMYSYYGLS PSM YLWWKKY+TQ QL+QFVLTI T V+ PC FP G L FQ
Sbjct: 181 ILMYSYYGLSVFPSMHKYLWWKKYLTQAQLVQFVLTITHTMSAVVKPCGFPFGCLIFQSS 240
Query: 238 YMISLIALFTNFYIQTYNKKGASRRKDHLKDHQNGSMAAVNGHTNSFSPLENNVKPRK 295
YM++L+ LF NFY+QTY KK +KD NG + ++ N V +K
Sbjct: 241 YMLTLVILFLNFYVQTYRKK--PMKKD--MQEPPAGKEVKNGFSKAYFTAANGVMNKK 294
>gi|12232379 elongation of very long chain fatty acids-like 4 [Homo
sapiens]
Length = 314
Score = 249 bits (635), Expect = 3e-66
Identities = 113/239 (47%), Positives = 162/239 (67%), Gaps = 2/239 (0%)
Query: 20 DTRVKGWFLLDNYIPTFICSVIYLLIVWLGPKYMRNKQPFSCRGILVVYNLGLTLLSLYM 79
D RV+ W L+ + PT S +YLL VWLGPK+M++++PF R +L++YN G+ LL+L++
Sbjct: 34 DKRVENWPLMQSPWPTLSISTLYLLFVWLGPKWMKDREPFQMRLVLIIYNFGMVLLNLFI 93
Query: 80 FCELVTGVWEGKYNFFCQGTRTAGE-SDMKIIRVLWWYYFSKLIEFMDTFFFILRKNNHQ 138
F EL G + Y++ CQ + +++I LWWY+ SK +E++DT FFILRK N+Q
Sbjct: 94 FRELFMGSYNAGYSYICQSVDYSNNVHEVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQ 153
Query: 139 ITVLHVYHHASMLNIWWFVMNWVPCGHSYFGATLNSFIHVLMYSYYGLSSV-PSMRPYLW 197
++ LHVYHH +M +WW + WV G ++FGA LNSFIHV+MYSYYGL++ P ++ YLW
Sbjct: 154 VSFLHVYHHCTMFTLWWIGIKWVAGGQAFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLW 213
Query: 198 WKKYITQGQLLQFVLTIIQTSCGVIWPCTFPLGWLYFQIGYMISLIALFTNFYIQTYNK 256
WK+Y+T QL+QF +TI T+ + C FP + I Y IS I LF NFYI+TY +
Sbjct: 214 WKRYLTMLQLIQFHVTIGHTALSLYTDCPFPKWMHWALIAYAISFIFLFLNFYIRTYKE 272
>gi|13489093 elongation of very long chain fatty acids-like 1 [Homo
sapiens]
Length = 279
Score = 181 bits (460), Expect = 5e-46
Identities = 96/255 (37%), Positives = 146/255 (57%), Gaps = 15/255 (5%)
Query: 12 FKALLGPRDTRVKGWFLLDN-YIPTFICSVIYLLIVWLGPKYMRNKQPFSCRGILVVYNL 70
++ ++ D R++G+ L+ + + T I ++ LGP+ M N++PF RG ++VYN
Sbjct: 8 YQEVMKHADPRIQGYPLMGSPLLMTSILLTYVYFVLSLGPRIMANRKPFQLRGFMIVYNF 67
Query: 71 GLTLLSLYMFCELVTGVWEGKYNFFCQGTRTAGESD-MKIIRVLWWYYFSKLIEFMDTFF 129
L LSLY+ E + W Y + C + + ++++RV W + FSK IE MDT
Sbjct: 68 SLVALSLYIVYEFLMSGWLSTYTWRCDPVDYSNSPEALRMVRVAWLFLFSKFIELMDTVI 127
Query: 130 FILRKNNHQITVLHVYHHASMLNIWWFVMNWVPCGHSYFGATLNSFIHVLMYSYYGLSSV 189
FILRK + Q+T LHV+HH+ + WW+ + P G F A +NS +HV+MY YYGLS+
Sbjct: 128 FILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVIMYLYYGLSAF 187
Query: 190 -PSMRPYLWWKKYITQGQLLQFVLTII-------QTSCGVIWPCTFPLGWLYFQIGYMIS 241
P +PYLWWKK++T QL+QFVL + +SC +P L W+Y I +M
Sbjct: 188 GPVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFMSSCNYQYPVIIHLIWMYGTIFFM-- 245
Query: 242 LIALFTNFYIQTYNK 256
LF+NF+ +Y K
Sbjct: 246 ---LFSNFWYHSYTK 257
>gi|157388949 elongation of very long chain fatty acids-like 7 [Homo
sapiens]
Length = 281
Score = 179 bits (453), Expect = 3e-45
Identities = 96/247 (38%), Positives = 137/247 (55%), Gaps = 15/247 (6%)
Query: 20 DTRVKGWFLLDNYIPTFICSVIYLLIVW-LGPKYMRNKQPFSCRGILVVYNLGLTLLSLY 78
D RV+ W L+ + +P I Y+ V LGPK M N++PF + ++ YN + L S+Y
Sbjct: 22 DPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRKPFELKKAMITYNFFIVLFSVY 81
Query: 79 MFCELVTGVWEGKYNFFCQGTR-TAGESDMKIIRVLWWYYFSKLIEFMDTFFFILRKNNH 137
M E V W Y+F C + + +++ R W YYFSK IE +DT FF+LRK N
Sbjct: 82 MCYEFVMSGWGIGYSFRCDIVDYSRSPTALRMARTCWLYYFSKFIELLDTIFFVLRKKNS 141
Query: 138 QITVLHVYHHASMLNIWWFVMNWVPCGHSYFGATLNSFIHVLMYSYYGLSSV-PSMRPYL 196
Q+T LHV+HH M WWF + + G F A LN+ +HV+MYSYYGLS++ P+ + YL
Sbjct: 142 QVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHALLNTAVHVVMYSYYGLSALGPAYQKYL 201
Query: 197 WWKKYITQGQLLQFVLTIIQTS-------CGVIWPCTFPLGWLYFQIGYMISLIALFTNF 249
WWKKY+T QL+QFV+ I S C +P + + Y + LF +F
Sbjct: 202 WWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPV-----FACIIMSYSFMFLLLFLHF 256
Query: 250 YIQTYNK 256
+ + Y K
Sbjct: 257 WYRAYTK 263
>gi|157388947 elongation of very long chain fatty acids-like 7 [Homo
sapiens]
Length = 281
Score = 179 bits (453), Expect = 3e-45
Identities = 96/247 (38%), Positives = 137/247 (55%), Gaps = 15/247 (6%)
Query: 20 DTRVKGWFLLDNYIPTFICSVIYLLIVW-LGPKYMRNKQPFSCRGILVVYNLGLTLLSLY 78
D RV+ W L+ + +P I Y+ V LGPK M N++PF + ++ YN + L S+Y
Sbjct: 22 DPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRKPFELKKAMITYNFFIVLFSVY 81
Query: 79 MFCELVTGVWEGKYNFFCQGTR-TAGESDMKIIRVLWWYYFSKLIEFMDTFFFILRKNNH 137
M E V W Y+F C + + +++ R W YYFSK IE +DT FF+LRK N
Sbjct: 82 MCYEFVMSGWGIGYSFRCDIVDYSRSPTALRMARTCWLYYFSKFIELLDTIFFVLRKKNS 141
Query: 138 QITVLHVYHHASMLNIWWFVMNWVPCGHSYFGATLNSFIHVLMYSYYGLSSV-PSMRPYL 196
Q+T LHV+HH M WWF + + G F A LN+ +HV+MYSYYGLS++ P+ + YL
Sbjct: 142 QVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHALLNTAVHVVMYSYYGLSALGPAYQKYL 201
Query: 197 WWKKYITQGQLLQFVLTIIQTS-------CGVIWPCTFPLGWLYFQIGYMISLIALFTNF 249
WWKKY+T QL+QFV+ I S C +P + + Y + LF +F
Sbjct: 202 WWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPV-----FACIIMSYSFMFLLLFLHF 256
Query: 250 YIQTYNK 256
+ + Y K
Sbjct: 257 WYRAYTK 263
>gi|23097310 elongation of very long chain fatty acids like 3 [Homo
sapiens]
Length = 270
Score = 82.8 bits (203), Expect = 3e-16
Identities = 70/245 (28%), Positives = 116/245 (47%), Gaps = 32/245 (13%)
Query: 27 FLLDNYIPTFICSVIYLLIVWLGPKYMRNKQPFSCRGILVVYNLGLTLLSL--------Y 78
F + + +F ++IYL+++ +G YM+ ++ F+ +G L++++ L + S+
Sbjct: 29 FFEEYWATSFPIALIYLVLIAVGQNYMKERKGFNLQGPLILWSFCLAIFSILGAVRMWGI 88
Query: 79 MFCELVTGVWEGKYNFFCQGTRTAGESDMKIIRVLWWYYFSKLIEFMDTFFFILRKNNHQ 138
M L+TG + F S +K W + SK+IE DT F ILRK
Sbjct: 89 MGTVLLTGGLKQTVCFI----NFIDNSTVKFWS--WVFLLSKVIELGDTAFIILRK--RP 140
Query: 139 ITVLHVYHHASMLNIWWF-VMNWVPCGHSYFGATLNSFIHVLMYSYYGLSSV----PSMR 193
+ +H YHH+++L F N VP G + T+N +H +MY+YY L + P M
Sbjct: 141 LIFIHWYHHSTVLVYTSFGYKNKVPAGGWF--VTMNFGVHAIMYTYYTLKAANVKPPKML 198
Query: 194 PYLWWKKYITQGQLLQFVLTIIQTSCGVIW----PCTFPLGWLYFQIGYMISLIALFTNF 249
P L IT Q+LQ + I + IW C + L++ ++ LF +F
Sbjct: 199 PML-----ITSLQILQMFVGAIVSILTYIWRQDQGCHTTMEHLFWSFILYMTYFILFAHF 253
Query: 250 YIQTY 254
+ QTY
Sbjct: 254 FCQTY 258
>gi|195539343 elongation of very long chain fatty acids-like 6 [Homo
sapiens]
Length = 265
Score = 74.3 bits (181), Expect = 1e-13
Identities = 63/238 (26%), Positives = 108/238 (45%), Gaps = 18/238 (7%)
Query: 27 FLLDNYIPTFICSVIYLLIVWLGPKYMRNKQPFSCRGILVVYNLGLTLLSLYMFCELVTG 86
++ +N+ +F+ S +Y ++ G M + F R LV+++L L + S+ F L TG
Sbjct: 25 WMQENWKKSFLFSALYAAFIFGGRHLMNKRAKFELRKPLVLWSLTLAVFSI--FGALRTG 82
Query: 87 VWEGKYNFFCQGTRTAGESDMKI----IRVLWWYYF--SKLIEFMDTFFFILRKNNHQIT 140
+ Y +G + + D + W Y F SK E DT F ILRK ++
Sbjct: 83 AYM-VYILMTKGLKQS-VCDQGFYNGPVSKFWAYAFVLSKAPELGDTIFIILRKQ--KLI 138
Query: 141 VLHVYHHASMLNIWWFVMNWVPCGHSYFGATLNSFIHVLMYSYYGLSSVPSMRPYLWWKK 200
LH YHH ++L W+ + G +F T+N +H +MYSYY L + R +
Sbjct: 139 FLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHAVMYSYYALRAA-GFRVSRKFAM 196
Query: 201 YITQGQLLQFVLTIIQTSCGVIW----PCTFPLGWLYFQIGYMISLIALFTNFYIQTY 254
+IT Q+ Q ++ + W C +++ +S + LF +F+ + Y
Sbjct: 197 FITLSQITQMLMGCVVNYLVFCWMQHDQCHSHFQNIFWSSLMYLSYLVLFCHFFFEAY 254
>gi|13129088 elongation of very long chain fatty acids-like 6 [Homo
sapiens]
Length = 265
Score = 74.3 bits (181), Expect = 1e-13
Identities = 63/238 (26%), Positives = 108/238 (45%), Gaps = 18/238 (7%)
Query: 27 FLLDNYIPTFICSVIYLLIVWLGPKYMRNKQPFSCRGILVVYNLGLTLLSLYMFCELVTG 86
++ +N+ +F+ S +Y ++ G M + F R LV+++L L + S+ F L TG
Sbjct: 25 WMQENWKKSFLFSALYAAFIFGGRHLMNKRAKFELRKPLVLWSLTLAVFSI--FGALRTG 82
Query: 87 VWEGKYNFFCQGTRTAGESDMKI----IRVLWWYYF--SKLIEFMDTFFFILRKNNHQIT 140
+ Y +G + + D + W Y F SK E DT F ILRK ++
Sbjct: 83 AYM-VYILMTKGLKQS-VCDQGFYNGPVSKFWAYAFVLSKAPELGDTIFIILRKQ--KLI 138
Query: 141 VLHVYHHASMLNIWWFVMNWVPCGHSYFGATLNSFIHVLMYSYYGLSSVPSMRPYLWWKK 200
LH YHH ++L W+ + G +F T+N +H +MYSYY L + R +
Sbjct: 139 FLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHAVMYSYYALRAA-GFRVSRKFAM 196
Query: 201 YITQGQLLQFVLTIIQTSCGVIW----PCTFPLGWLYFQIGYMISLIALFTNFYIQTY 254
+IT Q+ Q ++ + W C +++ +S + LF +F+ + Y
Sbjct: 197 FITLSQITQMLMGCVVNYLVFCWMQHDQCHSHFQNIFWSSLMYLSYLVLFCHFFFEAY 254
>gi|134254450 patched isoform S [Homo sapiens]
Length = 1296
Score = 32.3 bits (72), Expect = 0.52
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 13/72 (18%)
Query: 181 YSYYGLSSVPSMRPYLWWKKYI-TQGQLLQFVLTIIQTSCGVIWPCTFPLGWLY----FQ 235
Y+ GLSS P+ P+L+W++YI + LL F+ V+ CTF + ++ +
Sbjct: 850 YTSLGLSSYPNGYPFLFWEQYIGLRHWLLLFI--------SVVLACTFLVCAVFLLNPWT 901
Query: 236 IGYMISLIALFT 247
G ++ ++AL T
Sbjct: 902 AGIIVMVLALMT 913
>gi|134254435 patched isoform S [Homo sapiens]
Length = 1296
Score = 32.3 bits (72), Expect = 0.52
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 13/72 (18%)
Query: 181 YSYYGLSSVPSMRPYLWWKKYI-TQGQLLQFVLTIIQTSCGVIWPCTFPLGWLY----FQ 235
Y+ GLSS P+ P+L+W++YI + LL F+ V+ CTF + ++ +
Sbjct: 850 YTSLGLSSYPNGYPFLFWEQYIGLRHWLLLFI--------SVVLACTFLVCAVFLLNPWT 901
Query: 236 IGYMISLIALFT 247
G ++ ++AL T
Sbjct: 902 AGIIVMVLALMT 913
>gi|134254468 patched isoform S [Homo sapiens]
Length = 1296
Score = 32.3 bits (72), Expect = 0.52
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 13/72 (18%)
Query: 181 YSYYGLSSVPSMRPYLWWKKYI-TQGQLLQFVLTIIQTSCGVIWPCTFPLGWLY----FQ 235
Y+ GLSS P+ P+L+W++YI + LL F+ V+ CTF + ++ +
Sbjct: 850 YTSLGLSSYPNGYPFLFWEQYIGLRHWLLLFI--------SVVLACTFLVCAVFLLNPWT 901
Query: 236 IGYMISLIALFT 247
G ++ ++AL T
Sbjct: 902 AGIIVMVLALMT 913
>gi|134254452 patched isoform S [Homo sapiens]
Length = 1296
Score = 32.3 bits (72), Expect = 0.52
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 13/72 (18%)
Query: 181 YSYYGLSSVPSMRPYLWWKKYI-TQGQLLQFVLTIIQTSCGVIWPCTFPLGWLY----FQ 235
Y+ GLSS P+ P+L+W++YI + LL F+ V+ CTF + ++ +
Sbjct: 850 YTSLGLSSYPNGYPFLFWEQYIGLRHWLLLFI--------SVVLACTFLVCAVFLLNPWT 901
Query: 236 IGYMISLIALFT 247
G ++ ++AL T
Sbjct: 902 AGIIVMVLALMT 913
>gi|134254432 patched isoform L' [Homo sapiens]
Length = 1446
Score = 32.3 bits (72), Expect = 0.52
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 13/72 (18%)
Query: 181 YSYYGLSSVPSMRPYLWWKKYI-TQGQLLQFVLTIIQTSCGVIWPCTFPLGWLY----FQ 235
Y+ GLSS P+ P+L+W++YI + LL F+ V+ CTF + ++ +
Sbjct: 1000 YTSLGLSSYPNGYPFLFWEQYIGLRHWLLLFI--------SVVLACTFLVCAVFLLNPWT 1051
Query: 236 IGYMISLIALFT 247
G ++ ++AL T
Sbjct: 1052 AGIIVMVLALMT 1063
>gi|134254466 patched isoform M [Homo sapiens]
Length = 1381
Score = 32.3 bits (72), Expect = 0.52
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 13/72 (18%)
Query: 181 YSYYGLSSVPSMRPYLWWKKYI-TQGQLLQFVLTIIQTSCGVIWPCTFPLGWLY----FQ 235
Y+ GLSS P+ P+L+W++YI + LL F+ V+ CTF + ++ +
Sbjct: 935 YTSLGLSSYPNGYPFLFWEQYIGLRHWLLLFI--------SVVLACTFLVCAVFLLNPWT 986
Query: 236 IGYMISLIALFT 247
G ++ ++AL T
Sbjct: 987 AGIIVMVLALMT 998
>gi|134254446 patched isoform L [Homo sapiens]
Length = 1447
Score = 32.3 bits (72), Expect = 0.52
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 13/72 (18%)
Query: 181 YSYYGLSSVPSMRPYLWWKKYI-TQGQLLQFVLTIIQTSCGVIWPCTFPLGWLY----FQ 235
Y+ GLSS P+ P+L+W++YI + LL F+ V+ CTF + ++ +
Sbjct: 1001 YTSLGLSSYPNGYPFLFWEQYIGLRHWLLLFI--------SVVLACTFLVCAVFLLNPWT 1052
Query: 236 IGYMISLIALFT 247
G ++ ++AL T
Sbjct: 1053 AGIIVMVLALMT 1064
>gi|212720630 transmembrane protein 120B [Homo sapiens]
Length = 339
Score = 30.8 bits (68), Expect = 1.5
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 10 TYFKALLGPRDTRVKGWFLLDNYIPTFICSVIYLLIVW-LGPKYMRNKQPF 59
T +++L +R+KGW++ +Y+ TF+ V ++ W GP Y + + F
Sbjct: 172 TIRESILISNGSRIKGWWVSHHYVSTFLSGV---MLTWPNGPIYQKFRNQF 219
>gi|14424433 ATPase, class V, type 10A [Homo sapiens]
Length = 1499
Score = 30.0 bits (66), Expect = 2.6
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 7/89 (7%)
Query: 139 ITVLHVYHHASMLNIWWFVMNWVPCGHSYFGATLNSFIHVLMYSYYGLSSVPSMRPYLWW 198
I +L H + W +NW+ CG S L F L+Y+ + P PY W
Sbjct: 1210 IALLTFLLHLGIETKTWTWLNWITCGFS----VLLFFTVALIYNASCATCYPPSNPY--W 1263
Query: 199 KKYITQGQLLQFVLTIIQTSCGVIWPCTF 227
G + F LT + T + P F
Sbjct: 1264 TMQALLGDPV-FYLTCLMTPVAALLPRLF 1291
>gi|29789379 sphingomyelin synthase 1 [Homo sapiens]
Length = 413
Score = 29.3 bits (64), Expect = 4.4
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 111 RVLWWYYF-SKLIEFMDTFFFILRKNNHQITVLHVYHHASMLNIWWF 156
R LWWY++ L+ + F +L +++ + V+ Y+ + L WW+
Sbjct: 302 RRLWWYHWICWLLSVVGIFCILLAHDHYTVDVVVAYYITTRL-FWWY 347
>gi|157074214 potassium channel, subfamily U, member 1 [Homo
sapiens]
Length = 1149
Score = 29.3 bits (64), Expect = 4.4
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 4 FDASLSTYFKALLGPRDTRVKGWFLLDNYI------PTFICSVIYLLIVWLGPKYMR 54
F+A S YF D ++K W +++ + PTFI YL WLG +++R
Sbjct: 145 FNAFFSFYFGLRFMAADDKIKFWLEMNSIVDIFTIPPTFIS--YYLKSNWLGLRFLR 199
>gi|52353282 olfactory receptor, family 7, subfamily D, member 4
[Homo sapiens]
Length = 312
Score = 28.9 bits (63), Expect = 5.8
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 102 AGESDMKIIRVLWWYYFSKLIEFMDTFFFILRKNNHQITVLHVYHHASMLN--------- 152
A D+ + L YF + MDTF + + + + H H+ ++N
Sbjct: 87 ARSKDISYMGCLTQVYFLMMFAGMDTFLLAVMAYDRFVAICHPLHYTVIMNPCLCGLLVL 146
Query: 153 IWWFVMNWVPCGH 165
WF++ W H
Sbjct: 147 ASWFIIFWFSLVH 159
>gi|52218826 olfactory receptor, family 1, subfamily J, member 4
[Homo sapiens]
Length = 313
Score = 28.9 bits (63), Expect = 5.8
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 17/63 (26%)
Query: 27 FLLDNYIPTFICSVIYLLIVWLGPKYMRNKQPFSCRGI----LVVYNLGLTLLSLYMFCE 82
F DN IP F C ++ LL SC I LV++ +G +++L + C
Sbjct: 168 FCADNTIPHFFCDLVALL-------------KLSCSDISLNELVIFTVGQAVITLPLICI 214
Query: 83 LVT 85
L++
Sbjct: 215 LIS 217
>gi|4505463 contactin associated protein 1 precursor [Homo sapiens]
Length = 1384
Score = 28.1 bits (61), Expect = 9.8
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 13/63 (20%)
Query: 230 GWLYFQIGYMIS-----LIALFTNFYIQTYNKKGASRRKDHLKDHQNGSMAAVNGHTNSF 284
GW+ +G++++ L+ + FY+Q + KG+ H N AA H S
Sbjct: 1280 GWVAILLGFLVAFLLLGLVGMLVLFYLQNHRYKGSY--------HTNEPKAAHEYHPGSK 1331
Query: 285 SPL 287
PL
Sbjct: 1332 PPL 1334
>gi|13994300 transmembrane protein 120A [Homo sapiens]
Length = 343
Score = 28.1 bits (61), Expect = 9.8
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 10 TYFKALLGPRDTRVKGWFLLDNYIPTFICSVI 41
T +++L +R+KGW++ +Y+ TF+ V+
Sbjct: 176 TIRESILINNGSRIKGWWVFHHYVSTFLSGVM 207
>gi|170932505 neuromedin U receptor 2 [Homo sapiens]
Length = 415
Score = 28.1 bits (61), Expect = 9.8
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 91 KYNFFCQGTRTAGESDMKIIRVLWWYYFSKLIEFMDTFFFILRKNNHQITVLHVYHHASM 150
K+++F G+ G + +I+ +W Y F +I+ F++L +TV+ V ++
Sbjct: 188 KFHYFPNGSLVPGSATCTVIKPMWIYNF--IIQVTSFLFYLL-----PMTVISVLYYLMA 240
Query: 151 LNI 153
L +
Sbjct: 241 LRL 243
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.329 0.142 0.484
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,148,133
Number of Sequences: 37866
Number of extensions: 459596
Number of successful extensions: 1236
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1203
Number of HSP's gapped (non-prelim): 26
length of query: 299
length of database: 18,247,518
effective HSP length: 102
effective length of query: 197
effective length of database: 14,385,186
effective search space: 2833881642
effective search space used: 2833881642
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.