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Search of human proteins with 218082953
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|218082953 autophagy-related protein 13 isoform 1 [Homo
sapiens]
(517 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|218082953 autophagy-related protein 13 isoform 1 [Homo sapiens] 1036 0.0
gi|41281462 autophagy-related protein 13 isoform 2 [Homo sapiens] 945 0.0
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 37 0.043
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 37 0.043
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 37 0.043
gi|151301228 formin binding protein 3 [Homo sapiens] 36 0.074
gi|91982772 mucin 17 [Homo sapiens] 35 0.13
gi|21361766 zinc finger protein 692 isoform 2 [Homo sapiens] 33 0.63
gi|209862873 zinc finger protein 692 isoform 1 [Homo sapiens] 33 0.63
gi|4507161 SRY-box 11 [Homo sapiens] 33 0.82
gi|73858570 serpin peptidase inhibitor, clade G, member 1 precur... 32 1.1
gi|73858568 serpin peptidase inhibitor, clade G, member 1 precur... 32 1.1
gi|239757222 PREDICTED: zinc finger protein 726 [Homo sapiens] 32 1.1
gi|117938270 jumpy isoform 2 [Homo sapiens] 32 1.1
gi|239754269 PREDICTED: hypothetical protein [Homo sapiens] 32 1.4
gi|169168665 PREDICTED: hypothetical protein [Homo sapiens] 32 1.4
gi|113417486 PREDICTED: hypothetical protein [Homo sapiens] 32 1.4
gi|239740898 PREDICTED: hypothetical protein [Homo sapiens] 32 1.4
gi|239740827 PREDICTED: hypothetical protein XP_002344067 [Homo ... 32 1.4
gi|239740674 PREDICTED: hypothetical protein [Homo sapiens] 32 1.4
gi|239740645 PREDICTED: hypothetical protein [Homo sapiens] 32 1.4
gi|239513940 PREDICTED: hypothetical protein [Homo sapiens] 32 1.4
gi|27735129 hypothetical protein LOC148345 [Homo sapiens] 32 1.8
gi|13994253 Golgi reassembly stacking protein 1 [Homo sapiens] 32 1.8
gi|53759148 retinoblastoma binding protein 5 [Homo sapiens] 32 1.8
gi|239740955 PREDICTED: similar to c114 SLIT-like testicular pro... 31 2.4
gi|239740953 PREDICTED: similar to c114 SLIT-like testicular pro... 31 2.4
gi|60302877 shugoshin-like 1 isoform B1 [Homo sapiens] 31 2.4
gi|60302875 shugoshin-like 1 isoform A1 [Homo sapiens] 31 2.4
gi|60302873 shugoshin-like 1 isoform B2 [Homo sapiens] 31 2.4
>gi|218082953 autophagy-related protein 13 isoform 1 [Homo sapiens]
Length = 517
Score = 1036 bits (2678), Expect = 0.0
Identities = 517/517 (100%), Positives = 517/517 (100%)
Query: 1 METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE 60
METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
Sbjct: 1 METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE 60
Query: 61 VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR 120
VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
Sbjct: 61 VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR 120
Query: 121 LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV 180
LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
Sbjct: 121 LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV 180
Query: 181 GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV 240
GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
Sbjct: 181 GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV 240
Query: 241 IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ 300
IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ
Sbjct: 241 IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ 300
Query: 301 LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA 360
LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
Sbjct: 301 LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA 360
Query: 361 SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE 420
SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
Sbjct: 361 SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE 420
Query: 421 SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS 480
SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
Sbjct: 421 SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS 480
Query: 481 IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ 517
IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
Sbjct: 481 IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ 517
>gi|41281462 autophagy-related protein 13 isoform 2 [Homo sapiens]
Length = 480
Score = 945 bits (2443), Expect = 0.0
Identities = 480/517 (92%), Positives = 480/517 (92%), Gaps = 37/517 (7%)
Query: 1 METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE 60
METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
Sbjct: 1 METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE 60
Query: 61 VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR 120
VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
Sbjct: 61 VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR 120
Query: 121 LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV 180
LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
Sbjct: 121 LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV 180
Query: 181 GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV 240
GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
Sbjct: 181 GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV 240
Query: 241 IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ 300
IYPSVEDSQEVCTTSFSTSPPS Q
Sbjct: 241 IYPSVEDSQEVCTTSFSTSPPS-------------------------------------Q 263
Query: 301 LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA 360
LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
Sbjct: 264 LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA 323
Query: 361 SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE 420
SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
Sbjct: 324 SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE 383
Query: 421 SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS 480
SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
Sbjct: 384 SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS 443
Query: 481 IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ 517
IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
Sbjct: 444 IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ 480
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 37.0 bits (84), Expect = 0.043
Identities = 45/185 (24%), Positives = 72/185 (38%), Gaps = 24/185 (12%)
Query: 305 GKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRASPHD 364
G EG +P P+ +QA+ + P ++ + +P+ + D +S SS+ + H
Sbjct: 1948 GPEGPLPEPPDGE-ELSQAEATKAGGKEPEEKATPSPSPAHTCDQCAISFSSQDLLTSHR 2006
Query: 365 VLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETESPLQ 424
L F+ LD+P +F +N + T PM PP + E
Sbjct: 2007 RLH---------FLPSLQPSAPPQLLDLPLLVFGERNPLVAATSPMPGPPLKRKHE---D 2054
Query: 425 GSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREF---QNPPQ--LSSL 479
GSL GS G G + + ILP L YR + NP + L +
Sbjct: 2055 GSLSPTGSEAGGGGEGEPP------RDKRLRTTILPEQLEILYRWYMQDSNPTRKMLDCI 2108
Query: 480 SIDIG 484
S ++G
Sbjct: 2109 SEEVG 2113
>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 37.0 bits (84), Expect = 0.043
Identities = 45/185 (24%), Positives = 72/185 (38%), Gaps = 24/185 (12%)
Query: 305 GKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRASPHD 364
G EG +P P+ +QA+ + P ++ + +P+ + D +S SS+ + H
Sbjct: 1864 GPEGPLPEPPDGE-ELSQAEATKAGGKEPEEKATPSPSPAHTCDQCAISFSSQDLLTSHR 1922
Query: 365 VLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETESPLQ 424
L F+ LD+P +F +N + T PM PP + E
Sbjct: 1923 RLH---------FLPSLQPSAPPQLLDLPLLVFGERNPLVAATSPMPGPPLKRKHE---D 1970
Query: 425 GSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREF---QNPPQ--LSSL 479
GSL GS G G + + ILP L YR + NP + L +
Sbjct: 1971 GSLSPTGSEAGGGGEGEPP------RDKRLRTTILPEQLEILYRWYMQDSNPTRKMLDCI 2024
Query: 480 SIDIG 484
S ++G
Sbjct: 2025 SEEVG 2029
>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 37.0 bits (84), Expect = 0.043
Identities = 45/185 (24%), Positives = 72/185 (38%), Gaps = 24/185 (12%)
Query: 305 GKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRASPHD 364
G EG +P P+ +QA+ + P ++ + +P+ + D +S SS+ + H
Sbjct: 1864 GPEGPLPEPPDGE-ELSQAEATKAGGKEPEEKATPSPSPAHTCDQCAISFSSQDLLTSHR 1922
Query: 365 VLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETESPLQ 424
L F+ LD+P +F +N + T PM PP + E
Sbjct: 1923 RLH---------FLPSLQPSAPPQLLDLPLLVFGERNPLVAATSPMPGPPLKRKHE---D 1970
Query: 425 GSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREF---QNPPQ--LSSL 479
GSL GS G G + + ILP L YR + NP + L +
Sbjct: 1971 GSLSPTGSEAGGGGEGEPP------RDKRLRTTILPEQLEILYRWYMQDSNPTRKMLDCI 2024
Query: 480 SIDIG 484
S ++G
Sbjct: 2025 SEEVG 2029
>gi|151301228 formin binding protein 3 [Homo sapiens]
Length = 930
Score = 36.2 bits (82), Expect = 0.074
Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 4/129 (3%)
Query: 249 QEVCTTSFSTSPPSQ----LSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQLMVP 304
QE CTT+ + P+ S+ + + AA V +A A AA NA+ V
Sbjct: 221 QEECTTTSTAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANANASTSASNTVS 280
Query: 305 GKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRASPHD 364
G VP + T D E T + ++ +TP+ + + VS+++ S +
Sbjct: 281 GTVPVVPEPEVTSIVATVVDNENTVTISTEEQAQLTSTPAIQDQSVEVSSNTGEETSKQE 340
Query: 365 VLETIFVRK 373
+ +K
Sbjct: 341 TVADFTPKK 349
>gi|91982772 mucin 17 [Homo sapiens]
Length = 4493
Score = 35.4 bits (80), Expect = 0.13
Identities = 49/226 (21%), Positives = 82/226 (36%), Gaps = 20/226 (8%)
Query: 246 EDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQLMVPG 305
E S + SFST+P +S LS P D + PV T + P
Sbjct: 3337 EGSTPLTNMSFSTTPVVSSEASTLSTTP-------VDTSTPV-------TTSTEASLSPT 3382
Query: 306 KEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTET-VSNSSEGRASPHD 364
G + + P GT + TP + ++ D+ T V+ S+E +SP
Sbjct: 3383 TAEGTSIPTSSPSEGTTPLASMPVSTTPVVSSEVNTLSTTPVDSNTLVTTSTEASSSPTI 3442
Query: 365 VLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETESPLQ 424
T + + P++ + L++ + + + + DT V SP SP
Sbjct: 3443 AEGTSLPTSTTSEGSTPLSIMPLSTTPVASSEASTLSTTPVDTSTPVT-TSSPTNSSPTT 3501
Query: 425 GSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKD----DILPMDLGTF 466
+ S +S G+T + + P S + P+D TF
Sbjct: 3502 AEVTSMPTSTAGEGSTPLTNMPVSTTPVASSEASTLSTTPVDSNTF 3547
>gi|21361766 zinc finger protein 692 isoform 2 [Homo sapiens]
Length = 519
Score = 33.1 bits (74), Expect = 0.63
Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 21/140 (15%)
Query: 231 YRTAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFA 290
Y ++ +D+ P + S CT +PP+ PAAL S+ LA P + A
Sbjct: 214 YSSSPDDSEPDAPRLLPSPVTCTPKEGETPPA----------PAAL---SSPLAVPALSA 260
Query: 291 AGLNATHPHQLMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTE 350
+ L++ P P + P P QA Q+ A + + A TP+ EDT
Sbjct: 261 SSLSSRAPP----PAEVRVQPQLSRTP----QAAQQTEALASTGSQAQSAPTPAWDEDTA 312
Query: 351 TVSNSSEGRASPHDVLETIF 370
+ +A+ +++ F
Sbjct: 313 QIGPKRIRKAAKRELMPCDF 332
>gi|209862873 zinc finger protein 692 isoform 1 [Homo sapiens]
Length = 524
Score = 33.1 bits (74), Expect = 0.63
Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 21/140 (15%)
Query: 231 YRTAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFA 290
Y ++ +D+ P + S CT +PP+ PAAL S+ LA P + A
Sbjct: 219 YSSSPDDSEPDAPRLLPSPVTCTPKEGETPPA----------PAAL---SSPLAVPALSA 265
Query: 291 AGLNATHPHQLMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTE 350
+ L++ P P + P P QA Q+ A + + A TP+ EDT
Sbjct: 266 SSLSSRAPP----PAEVRVQPQLSRTP----QAAQQTEALASTGSQAQSAPTPAWDEDTA 317
Query: 351 TVSNSSEGRASPHDVLETIF 370
+ +A+ +++ F
Sbjct: 318 QIGPKRIRKAAKRELMPCDF 337
>gi|4507161 SRY-box 11 [Homo sapiens]
Length = 441
Score = 32.7 bits (73), Expect = 0.82
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 400 KNLELEDTDPMVNPPDSP-ETESPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSK 455
KN+ + P+ P SP + S S S GSS GSSG DD +M D FS+
Sbjct: 316 KNITKQHPPPLAQPALSPASSRSVSTSSSSSSGSSSGSSGEDADD-LMFDLSLNFSQ 371
>gi|73858570 serpin peptidase inhibitor, clade G, member 1 precursor
[Homo sapiens]
Length = 500
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 341 ATPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPK 400
AT SSS+D E++ + EG+ + + + +FV + + P T S A +
Sbjct: 26 ATSSSSQDPESLQDRGEGKVATTVISKMLFVEPILEVSSLPTTNSTTNSATKITANTTDE 85
Query: 401 NLELEDTDPMVNP---PDSPETESP 422
T+P P P P T+ P
Sbjct: 86 PTTQPTTEPTTQPTIQPTQPTTQLP 110
>gi|73858568 serpin peptidase inhibitor, clade G, member 1 precursor
[Homo sapiens]
Length = 500
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 341 ATPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPK 400
AT SSS+D E++ + EG+ + + + +FV + + P T S A +
Sbjct: 26 ATSSSSQDPESLQDRGEGKVATTVISKMLFVEPILEVSSLPTTNSTTNSATKITANTTDE 85
Query: 401 NLELEDTDPMVNP---PDSPETESP 422
T+P P P P T+ P
Sbjct: 86 PTTQPTTEPTTQPTIQPTQPTTQLP 110
>gi|239757222 PREDICTED: zinc finger protein 726 [Homo sapiens]
Length = 853
Score = 32.3 bits (72), Expect = 1.1
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 285 YPVVFAAGLNATHPHQLMVPGKE--GGVPLAPNQPVHGTQADQERLATC 331
+P F L + PH PGK G+P AP+ PV Q Q A C
Sbjct: 5 WPPSFLGALGGSQPHHNCQPGKGKGAGLPAAPSVPVSSAQKGQIGRAGC 53
>gi|117938270 jumpy isoform 2 [Homo sapiens]
Length = 650
Score = 32.3 bits (72), Expect = 1.1
Identities = 26/91 (28%), Positives = 33/91 (36%), Gaps = 10/91 (10%)
Query: 412 NPPDSPETESPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQ 471
N P E P Q L SS SS N D+F + P R
Sbjct: 492 NRPQPSEDRLPSQQGLAEARSSSSSSSNHSDNFFRMGSSPLEVPKP----------RSVD 541
Query: 472 NPPQLSSLSIDIGAQSMAEDLDSLPEKLAVH 502
+P SSLS D G+ M S+ E+ +H
Sbjct: 542 HPLPGSSLSTDYGSWQMVTGCGSIQERAVLH 572
>gi|239754269 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1531
Score = 32.0 bits (71), Expect = 1.4
Identities = 42/158 (26%), Positives = 59/158 (37%), Gaps = 29/158 (18%)
Query: 233 TAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQLSS---------------SRLSYQPAALG 277
TAG +T S ++ CTT TS PS S S S +P A
Sbjct: 1208 TAGSETTTASTSGSETNTACTTGSETSTPSSAGSETNTAFIIGSETTIASTASLEPTATS 1267
Query: 278 VGSADLAYPVVFAAGLNA---THPHQLMVPGKEGGVPLAP--NQPVHGTQADQERL---- 328
+ ++ + A+G A T V K V + P N P+ GT+ RL
Sbjct: 1268 LTGSETTTVSITASGATAASTTVSSTTFVLTKATDVSIQPITNTPMSGTRTTGTRLTASS 1327
Query: 329 -ATCTPS-DRTHCAAT---PSSSEDTETVSNSSEGRAS 361
T P D T AA+ P +T + S+ G +S
Sbjct: 1328 SVTMAPGMDFTASAASHTVPGIVLNTSGLGTSTMGASS 1365
Score = 29.6 bits (65), Expect = 6.9
Identities = 42/212 (19%), Positives = 71/212 (33%), Gaps = 9/212 (4%)
Query: 233 TAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAG 292
T G + ++ + ++ T T+ S S + +A A+ AA
Sbjct: 169 TTGSEMTTVFTAGSETITPSTAGSETTTVSTAGSETTTVSTTGSETTTASTAHSETTAAS 228
Query: 293 LNATHPHQLMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETV 352
+ ++ G E V A ++ + D E T +T A+T + E T
Sbjct: 229 TMGSETTKVSTAGSETTVSTAGSETTAASTEDSETNTAFTEDSKTTTAST-TGFETTAAS 287
Query: 353 SNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDT----D 408
+ SE + ET +G K V+ S ++ A T
Sbjct: 288 TTGSEPTMASTMGSETTMASTIGPETTK----VSTASSEVTTVFAAGSETIRASTVGSET 343
Query: 409 PMVNPPDSPETESPLQGSLHSDGSSGGSSGNT 440
V+ S T + + GS S S+ GS T
Sbjct: 344 TTVSTTGSETTTASIMGSETSTDSTTGSETTT 375
>gi|169168665 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1521
Score = 32.0 bits (71), Expect = 1.4
Identities = 42/158 (26%), Positives = 59/158 (37%), Gaps = 29/158 (18%)
Query: 233 TAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQLSS---------------SRLSYQPAALG 277
TAG +T S ++ CTT TS PS S S S +P A
Sbjct: 1198 TAGSETTTASTSGSETNTACTTGSETSTPSSAGSETNTAFIIGSETTIASTASLEPTATS 1257
Query: 278 VGSADLAYPVVFAAGLNA---THPHQLMVPGKEGGVPLAP--NQPVHGTQADQERL---- 328
+ ++ + A+G A T V K V + P N P+ GT+ RL
Sbjct: 1258 LTGSETTTVSITASGATAASTTVSSTTFVLTKATDVSIQPITNTPMSGTRTTGTRLTASS 1317
Query: 329 -ATCTPS-DRTHCAAT---PSSSEDTETVSNSSEGRAS 361
T P D T AA+ P +T + S+ G +S
Sbjct: 1318 SVTMAPGMDFTASAASHTVPGIVLNTSGLGTSTMGASS 1355
Score = 29.6 bits (65), Expect = 6.9
Identities = 42/212 (19%), Positives = 71/212 (33%), Gaps = 9/212 (4%)
Query: 233 TAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAG 292
T G + ++ + ++ T T+ S S + +A A+ AA
Sbjct: 169 TTGSEMTTVFTAGSETITPSTAGSETTTVSTAGSETTTVSTTGSETTTASTAHSETTAAS 228
Query: 293 LNATHPHQLMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETV 352
+ ++ G E V A ++ + D E T +T A+T + E T
Sbjct: 229 TMGSETTKVSTAGSETTVSTAGSETTAASTEDSETNTAFTEDSKTTTAST-TGFETTAAS 287
Query: 353 SNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDT----D 408
+ SE + ET +G K V+ S ++ A T
Sbjct: 288 TTGSEPTMASTMGSETTMASTIGPETTK----VSTASSEVTTVFAAGSETIRASTVGSET 343
Query: 409 PMVNPPDSPETESPLQGSLHSDGSSGGSSGNT 440
V+ S T + + GS S S+ GS T
Sbjct: 344 TTVSTTGSETTTASIMGSETSTDSTTGSETTT 375
>gi|113417486 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1612
Score = 32.0 bits (71), Expect = 1.4
Identities = 42/158 (26%), Positives = 59/158 (37%), Gaps = 29/158 (18%)
Query: 233 TAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQLSS---------------SRLSYQPAALG 277
TAG +T S ++ CTT TS PS S S S +P A
Sbjct: 1198 TAGSETTTASTSGSETNTACTTGSETSTPSSAGSETNTAFIIGSESTIASTASLEPTATS 1257
Query: 278 VGSADLAYPVVFAAGLNA---THPHQLMVPGKEGGVPLAP--NQPVHGTQADQERL---- 328
+ ++ + A+G A T V K V + P N P+ GT+ RL
Sbjct: 1258 LTGSETTTVSITASGATAASTTVSSTTFVLTKATDVSIQPITNTPMSGTRTTGTRLTASS 1317
Query: 329 -ATCTPS-DRTHCAAT---PSSSEDTETVSNSSEGRAS 361
T P D T AA+ P +T + S+ G +S
Sbjct: 1318 SVTMAPGMDFTASAASHTVPGIVLNTSGLGTSTMGASS 1355
Score = 29.6 bits (65), Expect = 6.9
Identities = 42/212 (19%), Positives = 71/212 (33%), Gaps = 9/212 (4%)
Query: 233 TAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAG 292
T G + ++ + ++ T T+ S S + +A A+ AA
Sbjct: 169 TTGSEMTTVFTAGSETITPSTAGSETTTVSTAGSETTTVSTTGSETTTASTAHSETTAAS 228
Query: 293 LNATHPHQLMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETV 352
+ ++ G E V A ++ + D E T +T A+T + E T
Sbjct: 229 TMGSETTKVSTAGSETTVSTAGSETTAASTEDSETNTAFTEDSKTTTAST-TGFETTAAS 287
Query: 353 SNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDT----D 408
+ SE + ET +G K V+ S ++ A T
Sbjct: 288 TTGSEPTMASTMGSETTMASTIGPETTK----VSTASSEVTTVFAAGSETIRASTVGSET 343
Query: 409 PMVNPPDSPETESPLQGSLHSDGSSGGSSGNT 440
V+ S T + + GS S S+ GS T
Sbjct: 344 TTVSTTGSETTTASIMGSETSTDSTTGSETTT 375
>gi|239740898 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1542
Score = 32.0 bits (71), Expect = 1.4
Identities = 42/158 (26%), Positives = 59/158 (37%), Gaps = 29/158 (18%)
Query: 233 TAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQLSS---------------SRLSYQPAALG 277
TAG +T S ++ CTT TS PS S S S +P A
Sbjct: 1219 TAGSETTTASTSGSETNTACTTGSETSTPSSAGSETNTAFIIGSETTIASTASLEPTATS 1278
Query: 278 VGSADLAYPVVFAAGLNA---THPHQLMVPGKEGGVPLAP--NQPVHGTQADQERL---- 328
+ ++ + A+G A T V K V + P N P+ GT+ RL
Sbjct: 1279 LTGSETTTVSITASGATAASTTVSSTTFVLTKATDVSIQPITNTPMSGTRTTGTRLTASS 1338
Query: 329 -ATCTPS-DRTHCAAT---PSSSEDTETVSNSSEGRAS 361
T P D T AA+ P +T + S+ G +S
Sbjct: 1339 SVTMAPGMDFTASAASHTVPGIVLNTSGLGTSTMGASS 1376
Score = 29.6 bits (65), Expect = 6.9
Identities = 42/212 (19%), Positives = 71/212 (33%), Gaps = 9/212 (4%)
Query: 233 TAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAG 292
T G + ++ + ++ T T+ S S + +A A+ AA
Sbjct: 190 TTGSEMTTVFTAGSETITPSTAGSETTTVSTAGSETTTVSTTGSETTTASTAHSETTAAS 249
Query: 293 LNATHPHQLMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETV 352
+ ++ G E V A ++ + D E T +T A+T + E T
Sbjct: 250 TMGSETTKVSTAGSETTVSTAGSETTAASTEDSETNTAFTEDSKTTTAST-TGFETTAAS 308
Query: 353 SNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDT----D 408
+ SE + ET +G K V+ S ++ A T
Sbjct: 309 TTGSEPTMASTMGSETTMASTIGPETTK----VSTASSEVTTVFAAGSETIRASTVGSET 364
Query: 409 PMVNPPDSPETESPLQGSLHSDGSSGGSSGNT 440
V+ S T + + GS S S+ GS T
Sbjct: 365 TTVSTTGSETTTASIMGSETSTDSTTGSETTT 396
>gi|239740827 PREDICTED: hypothetical protein XP_002344067 [Homo
sapiens]
Length = 1521
Score = 32.0 bits (71), Expect = 1.4
Identities = 42/158 (26%), Positives = 59/158 (37%), Gaps = 29/158 (18%)
Query: 233 TAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQLSS---------------SRLSYQPAALG 277
TAG +T S ++ CTT TS PS S S S +P A
Sbjct: 1198 TAGSETTTASTSGSETNTACTTGSETSTPSSAGSETNTAFIIGSETTIASTASLEPTATS 1257
Query: 278 VGSADLAYPVVFAAGLNA---THPHQLMVPGKEGGVPLAP--NQPVHGTQADQERL---- 328
+ ++ + A+G A T V K V + P N P+ GT+ RL
Sbjct: 1258 LTGSETTTVSITASGATAASTTVSSTTFVLTKATDVSIQPITNTPMSGTRTTGTRLTASS 1317
Query: 329 -ATCTPS-DRTHCAAT---PSSSEDTETVSNSSEGRAS 361
T P D T AA+ P +T + S+ G +S
Sbjct: 1318 SVTMAPGMDFTASAASHTVPGIVLNTSGLGTSTMGASS 1355
Score = 29.6 bits (65), Expect = 6.9
Identities = 42/212 (19%), Positives = 71/212 (33%), Gaps = 9/212 (4%)
Query: 233 TAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAG 292
T G + ++ + ++ T T+ S S + +A A+ AA
Sbjct: 169 TTGSEMTTVFTAGSETITPSTAGSETTTVSTAGSETTTVSTTGSETTTASTAHSETTAAS 228
Query: 293 LNATHPHQLMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETV 352
+ ++ G E V A ++ + D E T +T A+T + E T
Sbjct: 229 TMGSETTKVSTAGSETTVSTAGSETTAASTEDSETNTAFTEDSKTTTAST-TGFETTAAS 287
Query: 353 SNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDT----D 408
+ SE + ET +G K V+ S ++ A T
Sbjct: 288 TTGSEPTMASTMGSETTMASTIGPETTK----VSTASSEVTTVFAAGSETIRASTVGSET 343
Query: 409 PMVNPPDSPETESPLQGSLHSDGSSGGSSGNT 440
V+ S T + + GS S S+ GS T
Sbjct: 344 TTVSTTGSETTTASIMGSETSTDSTTGSETTT 375
>gi|239740674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1531
Score = 32.0 bits (71), Expect = 1.4
Identities = 42/158 (26%), Positives = 59/158 (37%), Gaps = 29/158 (18%)
Query: 233 TAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQLSS---------------SRLSYQPAALG 277
TAG +T S ++ CTT TS PS S S S +P A
Sbjct: 1208 TAGSETTTASTSGSETNTACTTGSETSTPSSAGSETNTAFIIGSETTIASTASLEPTATS 1267
Query: 278 VGSADLAYPVVFAAGLNA---THPHQLMVPGKEGGVPLAP--NQPVHGTQADQERL---- 328
+ ++ + A+G A T V K V + P N P+ GT+ RL
Sbjct: 1268 LTGSETTTVSITASGATAASTTVSSTTFVLTKATDVSIQPITNTPMSGTRTTGTRLTASS 1327
Query: 329 -ATCTPS-DRTHCAAT---PSSSEDTETVSNSSEGRAS 361
T P D T AA+ P +T + S+ G +S
Sbjct: 1328 SVTMAPGMDFTASAASHTVPGIVLNTSGLGTSTMGASS 1365
Score = 29.6 bits (65), Expect = 6.9
Identities = 42/212 (19%), Positives = 71/212 (33%), Gaps = 9/212 (4%)
Query: 233 TAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAG 292
T G + ++ + ++ T T+ S S + +A A+ AA
Sbjct: 169 TTGSEMTTVFTAGSETITPSTAGSETTTVSTAGSETTTVSTTGSETTTASTAHSETTAAS 228
Query: 293 LNATHPHQLMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETV 352
+ ++ G E V A ++ + D E T +T A+T + E T
Sbjct: 229 TMGSETTKVSTAGSETTVSTAGSETTAASTEDSETNTAFTEDSKTTTAST-TGFETTAAS 287
Query: 353 SNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDT----D 408
+ SE + ET +G K V+ S ++ A T
Sbjct: 288 TTGSEPTMASTMGSETTMASTIGPETTK----VSTASSEVTTVFAAGSETIRASTVGSET 343
Query: 409 PMVNPPDSPETESPLQGSLHSDGSSGGSSGNT 440
V+ S T + + GS S S+ GS T
Sbjct: 344 TTVSTTGSETTTASIMGSETSTDSTTGSETTT 375
>gi|239740645 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1531
Score = 32.0 bits (71), Expect = 1.4
Identities = 42/158 (26%), Positives = 59/158 (37%), Gaps = 29/158 (18%)
Query: 233 TAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQLSS---------------SRLSYQPAALG 277
TAG +T S ++ CTT TS PS S S S +P A
Sbjct: 1208 TAGSETTTASTSGSETNTACTTGSETSTPSSAGSETNTAFIIGSETTIASTASLEPTATS 1267
Query: 278 VGSADLAYPVVFAAGLNA---THPHQLMVPGKEGGVPLAP--NQPVHGTQADQERL---- 328
+ ++ + A+G A T V K V + P N P+ GT+ RL
Sbjct: 1268 LTGSETTTVSITASGATAASTTVSSTTFVLTKATDVSIQPITNTPMSGTRTTGTRLTASS 1327
Query: 329 -ATCTPS-DRTHCAAT---PSSSEDTETVSNSSEGRAS 361
T P D T AA+ P +T + S+ G +S
Sbjct: 1328 SVTMAPGMDFTASAASHTVPGIVLNTSGLGTSTMGASS 1365
Score = 29.6 bits (65), Expect = 6.9
Identities = 42/212 (19%), Positives = 71/212 (33%), Gaps = 9/212 (4%)
Query: 233 TAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAG 292
T G + ++ + ++ T T+ S S + +A A+ AA
Sbjct: 169 TTGSEMTTVFTAGSETITPSTAGSETTTVSTAGSETTTVSTTGSETTTASTAHSETTAAS 228
Query: 293 LNATHPHQLMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETV 352
+ ++ G E V A ++ + D E T +T A+T + E T
Sbjct: 229 TMGSETTKVSTAGSETTVSTAGSETTAASTEDSETNTAFTEDSKTTTAST-TGFETTAAS 287
Query: 353 SNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDT----D 408
+ SE + ET +G K V+ S ++ A T
Sbjct: 288 TTGSEPTMASTMGSETTMASTIGPETTK----VSTASSEVTTVFAAGSETIRASTVGSET 343
Query: 409 PMVNPPDSPETESPLQGSLHSDGSSGGSSGNT 440
V+ S T + + GS S S+ GS T
Sbjct: 344 TTVSTTGSETTTASIMGSETSTDSTTGSETTT 375
>gi|239513940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1521
Score = 32.0 bits (71), Expect = 1.4
Identities = 42/158 (26%), Positives = 59/158 (37%), Gaps = 29/158 (18%)
Query: 233 TAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQLSS---------------SRLSYQPAALG 277
TAG +T S ++ CTT TS PS S S S +P A
Sbjct: 1198 TAGSETTTASTSGSETNTACTTGSETSTPSSAGSETNTAFIIGSESTIASTASLEPTATS 1257
Query: 278 VGSADLAYPVVFAAGLNA---THPHQLMVPGKEGGVPLAP--NQPVHGTQADQERL---- 328
+ ++ + A+G A T V K V + P N P+ GT+ RL
Sbjct: 1258 LTGSETTTVSITASGATAASTTVSSTTFVLTKATDVSIQPITNTPMSGTRTTGTRLTASS 1317
Query: 329 -ATCTPS-DRTHCAAT---PSSSEDTETVSNSSEGRAS 361
T P D T AA+ P +T + S+ G +S
Sbjct: 1318 SVTMAPGMDFTASAASHTVPGIVLNTSGLGTSTMGASS 1355
Score = 29.6 bits (65), Expect = 6.9
Identities = 42/212 (19%), Positives = 71/212 (33%), Gaps = 9/212 (4%)
Query: 233 TAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAG 292
T G + ++ + ++ T T+ S S + +A A+ AA
Sbjct: 169 TTGSEMTTVFTAGSETITPSTAGSETTTVSTAGSETTTVSTTGSETTTASTAHSETTAAS 228
Query: 293 LNATHPHQLMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETV 352
+ ++ G E V A ++ + D E T +T A+T + E T
Sbjct: 229 TMGSETTKVSTAGSETTVSTAGSETTAASTEDSETNTAFTEDSKTTTAST-TGFETTAAS 287
Query: 353 SNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDT----D 408
+ SE + ET +G K V+ S ++ A T
Sbjct: 288 TTGSEPTMASTMGSETTMASTIGPETTK----VSTASSEVTTVFAAGSETIRASTVGSET 343
Query: 409 PMVNPPDSPETESPLQGSLHSDGSSGGSSGNT 440
V+ S T + + GS S S+ GS T
Sbjct: 344 TTVSTTGSETTTASIMGSETSTDSTTGSETTT 375
>gi|27735129 hypothetical protein LOC148345 [Homo sapiens]
Length = 656
Score = 31.6 bits (70), Expect = 1.8
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 272 QPAALGVGSADLAYPVVFAAGLNATHPHQLMVPGKEGGVPLAPNQPVHGTQADQERLATC 331
+PA G SA + VV A P + +PG P++PV G QA R
Sbjct: 274 KPARRGQTSASILPRVVQAQRGPQPPPGEAGIPGHPTPPATLPSEPVEGVQASPWRPRPV 333
Query: 332 TPSDRTHCAATPSSSEDTETVSNSSEGRASPHDVL 366
P TH A T S D + S + P +L
Sbjct: 334 LP---THPALTLPVSSDASSPSPPAPRPERPESLL 365
>gi|13994253 Golgi reassembly stacking protein 1 [Homo sapiens]
Length = 440
Score = 31.6 bits (70), Expect = 1.8
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 14/106 (13%)
Query: 212 IDHFVDRPYPSSSP----MHPCNYRTAG-----EDTGVIYPSVEDSQEVCTTSFSTSPPS 262
+ HF++ P P M P +G ++PS+ S E+ TT+ STS P
Sbjct: 285 LPHFMETPLQPPPPVQRVMDPGFLDVSGISLLDNSNASVWPSLPSSTELTTTAVSTSGPE 344
Query: 263 QLSSSRLSYQPAALGVGSADLAYPVVF----AAGLNATHPHQLMVP 304
+ SS S++ S + V F A A H QL +P
Sbjct: 345 DICSSSSSHERGGEATWSGS-EFEVSFLDSPGAQAQADHLPQLTLP 389
>gi|53759148 retinoblastoma binding protein 5 [Homo sapiens]
Length = 538
Score = 31.6 bits (70), Expect = 1.8
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 12/61 (19%)
Query: 384 QVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETESP-----------LQGSLHSDGS 432
+V +TS+D P A F + ELED+ ++ P +PE E P +Q SL +G+
Sbjct: 374 EVDVTSVD-PIAAFCSSDEELEDSKALLYLPIAPEVEDPEENPYGPPPDAVQTSLMDEGA 432
Query: 433 S 433
S
Sbjct: 433 S 433
>gi|239740955 PREDICTED: similar to c114 SLIT-like testicular
protein isoform 1 [Homo sapiens]
Length = 1635
Score = 31.2 bits (69), Expect = 2.4
Identities = 43/201 (21%), Positives = 68/201 (33%), Gaps = 27/201 (13%)
Query: 223 SSPMHPCNYRTAGEDTGVIYPSV------EDSQEVCTTSFSTSPPSQLSSSRLSYQPAAL 276
S P H + A V P V E S EV T+ ++LS S +P A+
Sbjct: 395 SPPGHHQTHHLASPSVSVKPPDVQLTIAAEPSAEVGTSLVHQEATTRLSGSGNDVEPPAI 454
Query: 277 GVGSADLAYPVVFAAGLNATHPHQLMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDR 336
G P L +E G PLA Q + +P+ +
Sbjct: 455 QHGG-----------------PPLLPESSEEAG-PLAVQQETSFQSPEPINNENPSPTQQ 496
Query: 337 THCAATPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAM 396
A P ++E+ E+ E A + + + + + Q T+ LD+ F +
Sbjct: 497 EAAAEHPQTAEEGESSLTHQEAPAQTPEFPNVVVAQPPE---HSHLTQATVQPLDLGFTI 553
Query: 397 FAPKNLELEDTDPMVNPPDSP 417
E+E + M P P
Sbjct: 554 TPESKTEVELSPTMKETPTQP 574
>gi|239740953 PREDICTED: similar to c114 SLIT-like testicular
protein isoform 2 [Homo sapiens]
Length = 1700
Score = 31.2 bits (69), Expect = 2.4
Identities = 43/201 (21%), Positives = 68/201 (33%), Gaps = 27/201 (13%)
Query: 223 SSPMHPCNYRTAGEDTGVIYPSV------EDSQEVCTTSFSTSPPSQLSSSRLSYQPAAL 276
S P H + A V P V E S EV T+ ++LS S +P A+
Sbjct: 395 SPPGHHQTHHLASPSVSVKPPDVQLTIAAEPSAEVGTSLVHQEATTRLSGSGNDVEPPAI 454
Query: 277 GVGSADLAYPVVFAAGLNATHPHQLMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDR 336
G P L +E G PLA Q + +P+ +
Sbjct: 455 QHGG-----------------PPLLPESSEEAG-PLAVQQETSFQSPEPINNENPSPTQQ 496
Query: 337 THCAATPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAM 396
A P ++E+ E+ E A + + + + + Q T+ LD+ F +
Sbjct: 497 EAAAEHPQTAEEGESSLTHQEAPAQTPEFPNVVVAQPPE---HSHLTQATVQPLDLGFTI 553
Query: 397 FAPKNLELEDTDPMVNPPDSP 417
E+E + M P P
Sbjct: 554 TPESKTEVELSPTMKETPTQP 574
>gi|60302877 shugoshin-like 1 isoform B1 [Homo sapiens]
Length = 275
Score = 31.2 bits (69), Expect = 2.4
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 18 KFFALK---TVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPEVTHEAKKALAGQLP 74
+ +ALK T Q V+ ++IC+ + NL +KD+P++ E +LP
Sbjct: 95 QLYALKGKLTSQQTVEPAQNQEICSSGMDPNSDDSSRNLFVKDLPQIPLEET-----ELP 149
Query: 75 AVGRSMCVEISLKTSEGDSMELE 97
G S +E + T D++ ++
Sbjct: 150 GQGESFQIEDQIPTIPQDTLGVD 172
>gi|60302875 shugoshin-like 1 isoform A1 [Homo sapiens]
Length = 527
Score = 31.2 bits (69), Expect = 2.4
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 18 KFFALK---TVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPEVTHEAKKALAGQLP 74
+ +ALK T Q V+ ++IC+ + NL +KD+P++ E +LP
Sbjct: 95 QLYALKGKLTSQQTVEPAQNQEICSSGMDPNSDDSSRNLFVKDLPQIPLEET-----ELP 149
Query: 75 AVGRSMCVEISLKTSEGDSMELE 97
G S +E + T D++ ++
Sbjct: 150 GQGESFQIEDQIPTIPQDTLGVD 172
>gi|60302873 shugoshin-like 1 isoform B2 [Homo sapiens]
Length = 309
Score = 31.2 bits (69), Expect = 2.4
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 18 KFFALK---TVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPEVTHEAKKALAGQLP 74
+ +ALK T Q V+ ++IC+ + NL +KD+P++ E +LP
Sbjct: 95 QLYALKGKLTSQQTVEPAQNQEICSSGMDPNSDDSSRNLFVKDLPQIPLEET-----ELP 149
Query: 75 AVGRSMCVEISLKTSEGDSMELE 97
G S +E + T D++ ++
Sbjct: 150 GQGESFQIEDQIPTIPQDTLGVD 172
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,297,054
Number of Sequences: 37866
Number of extensions: 967746
Number of successful extensions: 3260
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 3175
Number of HSP's gapped (non-prelim): 126
length of query: 517
length of database: 18,247,518
effective HSP length: 107
effective length of query: 410
effective length of database: 14,195,856
effective search space: 5820300960
effective search space used: 5820300960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.