Guide to the Human Genome
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Name: TMEM194B Sequence: fasta or formatted (417aa) NCBI GI: 217416356
Description:

transmembrane protein 194B

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         26           5
 C cysteine            2.6         11           1
 D aspartate           2.4         10           2
 E glutamate           6.2         26           2
 F phenylalanine       6.2         26           2
 G glycine             4.1         17           2
 H histidine           1.9          8           1
 I isoleucine          5.5         23           3
 K lysine              4.6         19           2
 L leucine            12.2         51           3
 M methionine          2.9         12           1
 N asparagine          3.1         13           1
 P proline             4.6         19           2
 Q glutamine           2.9         12           1
 R arginine            5.5         23           2
 S serine              7.7         32           2
 T threonine           3.8         16           1
 V valine              8.4         35           2
 W tryptophan          3.6         15           2
 Y tyrosine            5.5         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 194B 
TMEM194A              0.283   transmembrane protein 194A isoform a 
TMEM194A              0.225   transmembrane protein 194A isoform b 
TRPM7                 0.008   transient receptor potential cation channel, subfam...
CATSPER2              0.008   sperm-associated cation channel 2 isoform 2 
CATSPER2              0.008   sperm-associated cation channel 2 isoform 1 
NPC1                  0.007   Niemann-Pick disease, type C1 precursor 
NRM                   0.006   nurim 
CATSPER2              0.006   sperm-associated cation channel 2 isoform 4 
SCN9A                 0.005   sodium channel, voltage-gated, type IX, alpha 
SLC2A4                0.005   glucose transporter 4 
TAS2R5                0.005   taste receptor T2R5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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