Search of human proteins with 21536346

Search of human proteins with 21536346

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|21536346 T-cell leukemia/lymphoma 6 isoform TCL6d1 [Homo
sapiens]
         (163 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|21536346 T-cell leukemia/lymphoma 6 isoform TCL6d1 [Homo sapi...   349   7e-97
gi|21536344 T-cell leukemia/lymphoma 6 isoform TCL6c1 [Homo sapi...   221   2e-58
gi|21536342 T-cell leukemia/lymphoma 6 isoform TCL6b1 [Homo sapi...   221   2e-58
gi|11140823 X-linked ectodysplasin receptor [Homo sapiens]             31   0.41 
gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]    31   0.54 
gi|56606131 tubulin tyrosine ligase-like family, member 9 [Homo ...    30   1.2  
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]     28   4.6  
gi|239753102 PREDICTED: hypothetical protein [Homo sapiens]            28   4.6  
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]          27   6.0  
gi|134031945 SCO-spondin [Homo sapiens]                                27   6.0  
gi|34577118 dopey family member 1 [Homo sapiens]                       27   6.0  
gi|122937293 tubulin tyrosine ligase-like family, member 8 [Homo...    27   7.8  

>gi|21536346 T-cell leukemia/lymphoma 6 isoform TCL6d1 [Homo
           sapiens]
          Length = 163

 Score =  349 bits (895), Expect = 7e-97
 Identities = 163/163 (100%), Positives = 163/163 (100%)

Query: 1   MAKSKVTQPSASEQRRIQVSCPSALSAAHATCFHAISVHLPATHLQSETESLRVCVEPKR 60
           MAKSKVTQPSASEQRRIQVSCPSALSAAHATCFHAISVHLPATHLQSETESLRVCVEPKR
Sbjct: 1   MAKSKVTQPSASEQRRIQVSCPSALSAAHATCFHAISVHLPATHLQSETESLRVCVEPKR 60

Query: 61  GQQWLEARHKSYLHSRRGDHAKDKLQRDNRFTSQTHSHWAKSSCHCRFESRPFFLPSPSW 120
           GQQWLEARHKSYLHSRRGDHAKDKLQRDNRFTSQTHSHWAKSSCHCRFESRPFFLPSPSW
Sbjct: 61  GQQWLEARHKSYLHSRRGDHAKDKLQRDNRFTSQTHSHWAKSSCHCRFESRPFFLPSPSW 120

Query: 121 SYNRSWGGESAERTWMKQRGTCLSHSPLDLLHPGLCQHKVGAR 163
           SYNRSWGGESAERTWMKQRGTCLSHSPLDLLHPGLCQHKVGAR
Sbjct: 121 SYNRSWGGESAERTWMKQRGTCLSHSPLDLLHPGLCQHKVGAR 163


>gi|21536344 T-cell leukemia/lymphoma 6 isoform TCL6c1 [Homo
           sapiens]
          Length = 119

 Score =  221 bits (563), Expect = 2e-58
 Identities = 99/99 (100%), Positives = 99/99 (100%)

Query: 65  LEARHKSYLHSRRGDHAKDKLQRDNRFTSQTHSHWAKSSCHCRFESRPFFLPSPSWSYNR 124
           LEARHKSYLHSRRGDHAKDKLQRDNRFTSQTHSHWAKSSCHCRFESRPFFLPSPSWSYNR
Sbjct: 21  LEARHKSYLHSRRGDHAKDKLQRDNRFTSQTHSHWAKSSCHCRFESRPFFLPSPSWSYNR 80

Query: 125 SWGGESAERTWMKQRGTCLSHSPLDLLHPGLCQHKVGAR 163
           SWGGESAERTWMKQRGTCLSHSPLDLLHPGLCQHKVGAR
Sbjct: 81  SWGGESAERTWMKQRGTCLSHSPLDLLHPGLCQHKVGAR 119


>gi|21536342 T-cell leukemia/lymphoma 6 isoform TCL6b1 [Homo
           sapiens]
          Length = 105

 Score =  221 bits (563), Expect = 2e-58
 Identities = 99/99 (100%), Positives = 99/99 (100%)

Query: 65  LEARHKSYLHSRRGDHAKDKLQRDNRFTSQTHSHWAKSSCHCRFESRPFFLPSPSWSYNR 124
           LEARHKSYLHSRRGDHAKDKLQRDNRFTSQTHSHWAKSSCHCRFESRPFFLPSPSWSYNR
Sbjct: 7   LEARHKSYLHSRRGDHAKDKLQRDNRFTSQTHSHWAKSSCHCRFESRPFFLPSPSWSYNR 66

Query: 125 SWGGESAERTWMKQRGTCLSHSPLDLLHPGLCQHKVGAR 163
           SWGGESAERTWMKQRGTCLSHSPLDLLHPGLCQHKVGAR
Sbjct: 67  SWGGESAERTWMKQRGTCLSHSPLDLLHPGLCQHKVGAR 105


>gi|11140823 X-linked ectodysplasin receptor [Homo sapiens]
          Length = 297

 Score = 31.2 bits (69), Expect = 0.41
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 92  TSQTHSHWAKSSCHCRFESRPFFLPSPSWSYNRSWGGESAERT 134
           TS++HSHW  S   C       F  S S++   + GG + E T
Sbjct: 240 TSESHSHWVHSPIECTELDLQKFSSSASYTGAETLGGNTVEST 282


>gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]
          Length = 1462

 Score = 30.8 bits (68), Expect = 0.54
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 80  HAKDKLQRDNRFTSQTHSHWAKSS-----CHCRFESRPFFLPSPSWSYNRSWGGESAER 133
           H K+++QR   +   +   W+K       C  R++ R     S SWSYN  +   S  R
Sbjct: 364 HWKEEMQRLRAYRPPSGEKWSKGDKLSDPCSSRWDERSLSQRSRSWSYNGYYSDLSTAR 422


>gi|56606131 tubulin tyrosine ligase-like family, member 9 [Homo
           sapiens]
          Length = 439

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 58  PKRGQQWLEARHKSYLHSRRGDHAKDKLQRD 88
           PK+G +W   R + YL S+ G  A + L RD
Sbjct: 267 PKKGCKWTLQRFRQYLASKHGPEAVETLFRD 297


>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
          Length = 494

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 2/91 (2%)

Query: 56  VEPKRGQQWLEARHKSYLHSRRGDHAKDKLQRDNRFTSQTHSHWAKSSCHCRFESRPFFL 115
           VE K G +   +  +S  HSR    ++   +  +R  S   SH +KS    R  SR    
Sbjct: 173 VEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSH-SKSRSRSRSGSRS-RS 230

Query: 116 PSPSWSYNRSWGGESAERTWMKQRGTCLSHS 146
            S S S +RS   +   R+  K++    SHS
Sbjct: 231 KSRSRSQSRSRSKKEKSRSPSKEKSRSRSHS 261


>gi|239753102 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 252

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 118 PSWSYNRSWGGESAERTWMKQRGTCLSHSPLDLLHPGLCQ 157
           PSW   R WGG    R     R      +    +H GLCQ
Sbjct: 163 PSWGA-RGWGGSEETRWGGDPRSQTPGETAFPAVHSGLCQ 201


>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
          Length = 715

 Score = 27.3 bits (59), Expect = 6.0
 Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 8/85 (9%)

Query: 61  GQQWLEARHKSYLHSRRGDHAKDKLQRDNRFTSQTHS-----HWAKSSCHCRFESRPFFL 115
           GQ  + +R KSY  +      K   Q   R   Q+HS       ++S    R  SR   +
Sbjct: 246 GQMIIPSREKSYSPTEMSSRVKSYNQASTRSRPQSHSQSRSPRRSRSGSQKRTHSR---V 302

Query: 116 PSPSWSYNRSWGGESAERTWMKQRG 140
            S SW  N S       +  + Q G
Sbjct: 303 RSHSWKRNHSRARSRTRKGILSQMG 327



 Score = 27.3 bits (59), Expect = 6.0
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 9/75 (12%)

Query: 74  HSRRGDHAKDKLQRDNRFTSQTHSH-WAKSSCHCRFESRPFFLPSPSWSYNRSWGGESAE 132
           HS+   H+K K Q  +R   +  SH W+++    R  S      S S S  R   G S+ 
Sbjct: 329 HSQSRSHSKGKSQNQSRTPRRGRSHNWSRNPSKERSHSH-----SRSSSKERDHRGSSSP 383

Query: 133 RTWMKQRGTCLSHSP 147
           R   K+ G   S SP
Sbjct: 384 R---KESGRSQSGSP 395


>gi|134031945 SCO-spondin [Homo sapiens]
          Length = 5147

 Score = 27.3 bits (59), Expect = 6.0
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 7/55 (12%)

Query: 22   PSALSAAHATCFHAISVHLP-------ATHLQSETESLRVCVEPKRGQQWLEARH 69
            PSAL+ A  T      +  P       A  L SE    R+C++P  G+ W  A H
Sbjct: 4540 PSALAPASRTALEEHWLRDPTGLSPTLAPLLASEQHRHRLCLDPATGRPWTGAPH 4594


>gi|34577118 dopey family member 1 [Homo sapiens]
          Length = 2465

 Score = 27.3 bits (59), Expect = 6.0
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 35  AISVHLPATHLQSETESLRVC--VEPKRGQQWLEARHKSYLHSRRGDHAKDKLQRDNRFT 92
           A++ HL   HL   T+SLR+C  +  K     L A     L    G +   K   D + +
Sbjct: 516 ALTSHLQTLHLSELTDSLRLCSKILSKVQPPLLSASTGGVLQFPSGQNNSVKEWEDKKVS 575

Query: 93  SQTHSH 98
           S +H +
Sbjct: 576 SVSHEN 581


>gi|122937293 tubulin tyrosine ligase-like family, member 8 [Homo
           sapiens]
          Length = 834

 Score = 26.9 bits (58), Expect = 7.8
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 81  AKDKLQRDNRFTSQTHSHWAKSSCHCRFESRPFFL-----PSPSWSYNRSWGGESAER 133
           A   L RDN++  Q +       C  +F+ R +FL     P   W Y  S+   S +R
Sbjct: 363 ADHPLSRDNKWVVQKYIETPLLICDTKFDIRQWFLVTDWNPLTIWFYKESYLRFSTQR 420


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.127    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,310,641
Number of Sequences: 37866
Number of extensions: 331515
Number of successful extensions: 773
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 764
Number of HSP's gapped (non-prelim): 17
length of query: 163
length of database: 18,247,518
effective HSP length: 94
effective length of query: 69
effective length of database: 14,688,114
effective search space: 1013479866
effective search space used: 1013479866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.