BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|21362032 ELMO/CED-12 domain containing 3 isoform a [Homo sapiens] (391 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|21362032 ELMO/CED-12 domain containing 3 isoform a [Homo sapi... 790 0.0 gi|203098650 ELMO/CED-12 domain containing 3 isoform b [Homo sap... 636 0.0 gi|203098539 ELMO/CED-12 domain containing 3 isoform b [Homo sap... 636 0.0 gi|203098474 ELMO/CED-12 domain containing 3 isoform b [Homo sap... 636 0.0 gi|24308456 ELMO/CED-12 domain containing 2 [Homo sapiens] 60 3e-09 gi|194097484 ELMO/CED-12 domain containing 1 isoform 2 [Homo sap... 48 1e-05 gi|112181294 ELMO/CED-12 domain containing 1 isoform 1 [Homo sap... 47 3e-05 gi|87298935 engulfment and cell motility 3 [Homo sapiens] 37 0.023 gi|154426331 early undifferentiated retina and lens isoform 1 [H... 32 0.75 gi|110347463 human immunodeficiency virus type I enhancer bindin... 32 0.98 gi|18765700 engulfment and cell motility 1 isoform 1 [Homo sapiens] 31 1.7 gi|116517321 olfactory receptor, family 52, subfamily R, member ... 30 3.7 gi|169173146 PREDICTED: hypothetical protein [Homo sapiens] 30 4.9 gi|113419909 PREDICTED: hypothetical protein [Homo sapiens] 30 4.9 gi|23592220 G protein-coupled receptor 26 [Homo sapiens] 29 8.3 >gi|21362032 ELMO/CED-12 domain containing 3 isoform a [Homo sapiens] Length = 391 Score = 790 bits (2040), Expect = 0.0 Identities = 391/391 (100%), Positives = 391/391 (100%) Query: 1 MNEKSCSFHSKEELRDGQGERLSAGYSPSYDKDKSVLAFRGIPISELKNHGILQALTTEA 60 MNEKSCSFHSKEELRDGQGERLSAGYSPSYDKDKSVLAFRGIPISELKNHGILQALTTEA Sbjct: 1 MNEKSCSFHSKEELRDGQGERLSAGYSPSYDKDKSVLAFRGIPISELKNHGILQALTTEA 60 Query: 61 YEWEPRVVSTEVVRAQEEWEAVDTIQPETGSQASSEQPGQLISFSEALQHFQTVDLSPFK 120 YEWEPRVVSTEVVRAQEEWEAVDTIQPETGSQASSEQPGQLISFSEALQHFQTVDLSPFK Sbjct: 61 YEWEPRVVSTEVVRAQEEWEAVDTIQPETGSQASSEQPGQLISFSEALQHFQTVDLSPFK 120 Query: 121 KRIQPTIRRTGLAALRHYLFGPPKLHQRLREERDLVLTIAQCGLDSQDPVHGRVLQTIYK 180 KRIQPTIRRTGLAALRHYLFGPPKLHQRLREERDLVLTIAQCGLDSQDPVHGRVLQTIYK Sbjct: 121 KRIQPTIRRTGLAALRHYLFGPPKLHQRLREERDLVLTIAQCGLDSQDPVHGRVLQTIYK 180 Query: 181 KLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYLVMDSKTLPMAQEIFRL 240 KLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYLVMDSKTLPMAQEIFRL Sbjct: 181 KLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYLVMDSKTLPMAQEIFRL 240 Query: 241 SRHHIQQFPFCLMSVNITHIAIQALREECLSRECNRQQKVIPVVNSFYAATFLHLAHVWR 300 SRHHIQQFPFCLMSVNITHIAIQALREECLSRECNRQQKVIPVVNSFYAATFLHLAHVWR Sbjct: 241 SRHHIQQFPFCLMSVNITHIAIQALREECLSRECNRQQKVIPVVNSFYAATFLHLAHVWR 300 Query: 301 TQRKTISDSGFVLKGVLFLLGRPRLNAQCPRSREPKVVARLVLAAVLPHPHFLKFQLTKI 360 TQRKTISDSGFVLKGVLFLLGRPRLNAQCPRSREPKVVARLVLAAVLPHPHFLKFQLTKI Sbjct: 301 TQRKTISDSGFVLKGVLFLLGRPRLNAQCPRSREPKVVARLVLAAVLPHPHFLKFQLTKI 360 Query: 361 SITHPLESASSPFSALTVALFWSYTYDKHIF 391 SITHPLESASSPFSALTVALFWSYTYDKHIF Sbjct: 361 SITHPLESASSPFSALTVALFWSYTYDKHIF 391 >gi|203098650 ELMO/CED-12 domain containing 3 isoform b [Homo sapiens] Length = 381 Score = 636 bits (1640), Expect = 0.0 Identities = 314/314 (100%), Positives = 314/314 (100%) Query: 1 MNEKSCSFHSKEELRDGQGERLSAGYSPSYDKDKSVLAFRGIPISELKNHGILQALTTEA 60 MNEKSCSFHSKEELRDGQGERLSAGYSPSYDKDKSVLAFRGIPISELKNHGILQALTTEA Sbjct: 1 MNEKSCSFHSKEELRDGQGERLSAGYSPSYDKDKSVLAFRGIPISELKNHGILQALTTEA 60 Query: 61 YEWEPRVVSTEVVRAQEEWEAVDTIQPETGSQASSEQPGQLISFSEALQHFQTVDLSPFK 120 YEWEPRVVSTEVVRAQEEWEAVDTIQPETGSQASSEQPGQLISFSEALQHFQTVDLSPFK Sbjct: 61 YEWEPRVVSTEVVRAQEEWEAVDTIQPETGSQASSEQPGQLISFSEALQHFQTVDLSPFK 120 Query: 121 KRIQPTIRRTGLAALRHYLFGPPKLHQRLREERDLVLTIAQCGLDSQDPVHGRVLQTIYK 180 KRIQPTIRRTGLAALRHYLFGPPKLHQRLREERDLVLTIAQCGLDSQDPVHGRVLQTIYK Sbjct: 121 KRIQPTIRRTGLAALRHYLFGPPKLHQRLREERDLVLTIAQCGLDSQDPVHGRVLQTIYK 180 Query: 181 KLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYLVMDSKTLPMAQEIFRL 240 KLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYLVMDSKTLPMAQEIFRL Sbjct: 181 KLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYLVMDSKTLPMAQEIFRL 240 Query: 241 SRHHIQQFPFCLMSVNITHIAIQALREECLSRECNRQQKVIPVVNSFYAATFLHLAHVWR 300 SRHHIQQFPFCLMSVNITHIAIQALREECLSRECNRQQKVIPVVNSFYAATFLHLAHVWR Sbjct: 241 SRHHIQQFPFCLMSVNITHIAIQALREECLSRECNRQQKVIPVVNSFYAATFLHLAHVWR 300 Query: 301 TQRKTISDSGFVLK 314 TQRKTISDSGFVLK Sbjct: 301 TQRKTISDSGFVLK 314 >gi|203098539 ELMO/CED-12 domain containing 3 isoform b [Homo sapiens] Length = 381 Score = 636 bits (1640), Expect = 0.0 Identities = 314/314 (100%), Positives = 314/314 (100%) Query: 1 MNEKSCSFHSKEELRDGQGERLSAGYSPSYDKDKSVLAFRGIPISELKNHGILQALTTEA 60 MNEKSCSFHSKEELRDGQGERLSAGYSPSYDKDKSVLAFRGIPISELKNHGILQALTTEA Sbjct: 1 MNEKSCSFHSKEELRDGQGERLSAGYSPSYDKDKSVLAFRGIPISELKNHGILQALTTEA 60 Query: 61 YEWEPRVVSTEVVRAQEEWEAVDTIQPETGSQASSEQPGQLISFSEALQHFQTVDLSPFK 120 YEWEPRVVSTEVVRAQEEWEAVDTIQPETGSQASSEQPGQLISFSEALQHFQTVDLSPFK Sbjct: 61 YEWEPRVVSTEVVRAQEEWEAVDTIQPETGSQASSEQPGQLISFSEALQHFQTVDLSPFK 120 Query: 121 KRIQPTIRRTGLAALRHYLFGPPKLHQRLREERDLVLTIAQCGLDSQDPVHGRVLQTIYK 180 KRIQPTIRRTGLAALRHYLFGPPKLHQRLREERDLVLTIAQCGLDSQDPVHGRVLQTIYK Sbjct: 121 KRIQPTIRRTGLAALRHYLFGPPKLHQRLREERDLVLTIAQCGLDSQDPVHGRVLQTIYK 180 Query: 181 KLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYLVMDSKTLPMAQEIFRL 240 KLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYLVMDSKTLPMAQEIFRL Sbjct: 181 KLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYLVMDSKTLPMAQEIFRL 240 Query: 241 SRHHIQQFPFCLMSVNITHIAIQALREECLSRECNRQQKVIPVVNSFYAATFLHLAHVWR 300 SRHHIQQFPFCLMSVNITHIAIQALREECLSRECNRQQKVIPVVNSFYAATFLHLAHVWR Sbjct: 241 SRHHIQQFPFCLMSVNITHIAIQALREECLSRECNRQQKVIPVVNSFYAATFLHLAHVWR 300 Query: 301 TQRKTISDSGFVLK 314 TQRKTISDSGFVLK Sbjct: 301 TQRKTISDSGFVLK 314 >gi|203098474 ELMO/CED-12 domain containing 3 isoform b [Homo sapiens] Length = 381 Score = 636 bits (1640), Expect = 0.0 Identities = 314/314 (100%), Positives = 314/314 (100%) Query: 1 MNEKSCSFHSKEELRDGQGERLSAGYSPSYDKDKSVLAFRGIPISELKNHGILQALTTEA 60 MNEKSCSFHSKEELRDGQGERLSAGYSPSYDKDKSVLAFRGIPISELKNHGILQALTTEA Sbjct: 1 MNEKSCSFHSKEELRDGQGERLSAGYSPSYDKDKSVLAFRGIPISELKNHGILQALTTEA 60 Query: 61 YEWEPRVVSTEVVRAQEEWEAVDTIQPETGSQASSEQPGQLISFSEALQHFQTVDLSPFK 120 YEWEPRVVSTEVVRAQEEWEAVDTIQPETGSQASSEQPGQLISFSEALQHFQTVDLSPFK Sbjct: 61 YEWEPRVVSTEVVRAQEEWEAVDTIQPETGSQASSEQPGQLISFSEALQHFQTVDLSPFK 120 Query: 121 KRIQPTIRRTGLAALRHYLFGPPKLHQRLREERDLVLTIAQCGLDSQDPVHGRVLQTIYK 180 KRIQPTIRRTGLAALRHYLFGPPKLHQRLREERDLVLTIAQCGLDSQDPVHGRVLQTIYK Sbjct: 121 KRIQPTIRRTGLAALRHYLFGPPKLHQRLREERDLVLTIAQCGLDSQDPVHGRVLQTIYK 180 Query: 181 KLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYLVMDSKTLPMAQEIFRL 240 KLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYLVMDSKTLPMAQEIFRL Sbjct: 181 KLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYLVMDSKTLPMAQEIFRL 240 Query: 241 SRHHIQQFPFCLMSVNITHIAIQALREECLSRECNRQQKVIPVVNSFYAATFLHLAHVWR 300 SRHHIQQFPFCLMSVNITHIAIQALREECLSRECNRQQKVIPVVNSFYAATFLHLAHVWR Sbjct: 241 SRHHIQQFPFCLMSVNITHIAIQALREECLSRECNRQQKVIPVVNSFYAATFLHLAHVWR 300 Query: 301 TQRKTISDSGFVLK 314 TQRKTISDSGFVLK Sbjct: 301 TQRKTISDSGFVLK 314 >gi|24308456 ELMO/CED-12 domain containing 2 [Homo sapiens] Length = 293 Score = 60.1 bits (144), Expect = 3e-09 Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 2/124 (1%) Query: 165 DSQDPVHGRVLQTIYKKLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYL 224 DS + H +L ++ L +K A W ++GFQG +P TD RG G L L++L+Y Sbjct: 121 DSDNLQHEELLMKLWNLLMPTKKLNARISKQWAEIGFQGDDPKTDFRGMGILGLINLVY- 179 Query: 225 VMDSKTLPMAQEIFRLSRHHIQQFPFCLMSVNITHIAIQALREECLSRECNRQQKVIPVV 284 A +I S H + + ++ +N+T +A L+ E L IP + Sbjct: 180 -FSENYTSEAHQILSRSNHPKLGYSYAIVGINLTEMAYSLLKSEALKFHLYNLVPGIPTM 238 Query: 285 NSFY 288 F+ Sbjct: 239 EHFH 242 >gi|194097484 ELMO/CED-12 domain containing 1 isoform 2 [Homo sapiens] Length = 326 Score = 48.1 bits (113), Expect = 1e-05 Identities = 40/150 (26%), Positives = 60/150 (40%), Gaps = 20/150 (13%) Query: 165 DSQDPVHGRVLQTIYKKLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYL 224 DS +P H +L ++K L + + W ++GFQG +P TD RG G L L +L Y Sbjct: 128 DSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYF 187 Query: 225 VMDSKTLPMAQEIFRLSRH-----------------HIQQFPFCLMSVNITHIAIQALRE 267 T AQ++ S H + F ++ +NIT +A L Sbjct: 188 AERDAT--AAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVS 245 Query: 268 ECLSRECNRQQKVIPVVNSFYAATFLHLAH 297 L P + S + TF +L H Sbjct: 246 GALKTHFYNIAPEAPTL-SHFQQTFCYLMH 274 >gi|112181294 ELMO/CED-12 domain containing 1 isoform 1 [Homo sapiens] Length = 334 Score = 47.0 bits (110), Expect = 3e-05 Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 24/156 (15%) Query: 165 DSQDPVHGRVLQTIYKKLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYL 224 DS +P H +L ++K L + + W ++GFQG +P TD RG G L L +L Y Sbjct: 128 DSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYF 187 Query: 225 VMDSKTLPM---------------AQEIFRLSRHHIQQ--------FPFCLMSVNITHIA 261 T +EI + S+ ++ + F ++ +NIT +A Sbjct: 188 AERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVGINITDLA 247 Query: 262 IQALREECLSRECNRQQKVIPVVNSFYAATFLHLAH 297 L L P + S + TF +L H Sbjct: 248 YNLLVSGALKTHFYNIAPEAPTL-SHFQQTFCYLMH 282 >gi|87298935 engulfment and cell motility 3 [Homo sapiens] Length = 773 Score = 37.4 bits (85), Expect = 0.023 Identities = 46/183 (25%), Positives = 71/183 (38%), Gaps = 21/183 (11%) Query: 150 REERDLVLTIAQCGLDSQDPVHGRVLQTIYKKLTGSKFDCALHGNHWEDLGFQGANPATD 209 +E+R+ + + Q + + G L ++ +L + LGF +NPA D Sbjct: 359 QEQREQLQVLRQAAFEVEGESSGAGLSADRRR--------SLCAREFRKLGFSNSNPAQD 410 Query: 210 LRGA--GFLALLHLLYLVMDSKTLPMAQEIFRL---SRHHIQQFPFCLMSVNITHIAIQA 264 L G LAL ++LY S+ P A F L SR + PF S+ +T + + Sbjct: 411 LERVPPGLLALDNMLYF---SRNAPSAYSRFVLENSSREDKHECPFARGSIQLTVLLCEL 467 Query: 265 LR--EECLSRECNRQQKVIPVVNSF---YAATFLHLAHVWRTQRKTISDSGFVLKGVLFL 319 LR E C + SF + L W+ R T D V++ V Sbjct: 468 LRVGEPCSETAQDFSPMFFGQDQSFHELFCVGIQLLNKTWKEMRATQEDFDKVMQVVREQ 527 Query: 320 LGR 322 L R Sbjct: 528 LAR 530 >gi|154426331 early undifferentiated retina and lens isoform 1 [Homo sapiens] Length = 297 Score = 32.3 bits (72), Expect = 0.75 Identities = 13/49 (26%), Positives = 25/49 (51%) Query: 226 MDSKTLPMAQEIFRLSRHHIQQFPFCLMSVNITHIAIQALREECLSREC 274 +++K L QE+F H +Q+ +++ H+AI+ L + C C Sbjct: 233 LNAKLLQQIQEVFEELTHQVQEKDSLASQLHVRHVAIEQLLKNCSKLPC 281 >gi|110347463 human immunodeficiency virus type I enhancer binding protein 2 [Homo sapiens] Length = 2446 Score = 32.0 bits (71), Expect = 0.98 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 54 QALTTEAYEWEPRVVSTEVVRAQEEWEAVDTIQPETGSQASSEQPGQLISFSEALQHFQT 113 Q + ++Y +PR+V ++ E + +PE +A S++P + + + Q +T Sbjct: 867 QQVQQQSYHTQPRLVRQHNIQVPEIRVTEEPDKPEKEKEAQSKEPEKPVEEFQWPQRSET 926 Query: 114 VDLSPFKKRIQPTIRRTGLAALRH 137 + P +K + P +R LA + H Sbjct: 927 LSQLPAEK-LPPKKKRLRLADMEH 949 >gi|18765700 engulfment and cell motility 1 isoform 1 [Homo sapiens] Length = 727 Score = 31.2 bits (69), Expect = 1.7 Identities = 37/181 (20%), Positives = 70/181 (38%), Gaps = 16/181 (8%) Query: 144 KLHQRLREERDLVLTIAQCGLDSQDPVHGRVLQTIYKKLTGSKFDCALHGNHWEDLGF-Q 202 K+ + + +RD++ + + D++ + +K +++ ++ LGF Sbjct: 312 KMDPQDQAQRDIIFELRRIAFDAESEPNNSSGSMEKRK--------SMYTRDYKKLGFIN 363 Query: 203 GANPATDLRGA--GFLALLHLLYLVMDSKTLPMAQEIFRLSRHHIQQFPFCLMSVNITHI 260 NPA D G LAL ++LY + + + SR + PF S+ +T + Sbjct: 364 HVNPAMDFTQTPPGMLALDNMLYFAKHHQDAYIRIVLENSSREDKHECPFGRSSIELTKM 423 Query: 261 AIQALR-EECLSRECNRQQKVI----PVVNSFYAATFLHLAHVWRTQRKTISDSGFVLKG 315 + L+ E S CN + F+ L W+ R T D V++ Sbjct: 424 LCEILKVGELPSETCNDFHPMFFTHDRSFEEFFCICIQLLNKTWKEMRATSEDFNKVMQV 483 Query: 316 V 316 V Sbjct: 484 V 484 >gi|116517321 olfactory receptor, family 52, subfamily R, member 1 [Homo sapiens] Length = 394 Score = 30.0 bits (66), Expect = 3.7 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 215 FLALLHLLYLVMDSKTLPMAQEIFRLSRHHIQQFPFCLMSVNITH 259 FLA+L + LV+ S T P IF H I Q+ CL+ V H Sbjct: 144 FLAMLAITDLVLSSSTQPKMLAIFWFHAHEI-QYHACLIQVFFIH 187 >gi|169173146 PREDICTED: hypothetical protein [Homo sapiens] Length = 464 Score = 29.6 bits (65), Expect = 4.9 Identities = 13/30 (43%), Positives = 19/30 (63%) Query: 40 RGIPISELKNHGILQALTTEAYEWEPRVVS 69 R +P + K HG+LQA+ T+A + P V S Sbjct: 238 REVPQAASKTHGLLQAVRTQAQDKRPAVTS 267 >gi|113419909 PREDICTED: hypothetical protein [Homo sapiens] Length = 464 Score = 29.6 bits (65), Expect = 4.9 Identities = 13/30 (43%), Positives = 19/30 (63%) Query: 40 RGIPISELKNHGILQALTTEAYEWEPRVVS 69 R +P + K HG+LQA+ T+A + P V S Sbjct: 238 REVPQAASKTHGLLQAVRTQAQDKRPAVTS 267 >gi|23592220 G protein-coupled receptor 26 [Homo sapiens] Length = 337 Score = 28.9 bits (63), Expect = 8.3 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 206 PATDLRGAGFLALLHLLYLVMDSKTLPMAQ-EIFRLSRHHIQQFPFCLMSVNITHIAIQ- 263 P LR A F H L ++ L ++ +++R H ++ M + + + Sbjct: 163 PDERLRFAVFTGAFHALSFLLSFVVLCCTYLKVLKVARFHCKRIDVITMQTLVLLVDLHP 222 Query: 264 ALREECLSRECNRQQKVIPVVNSFYAATFL 293 ++RE CL + R+Q+ +++F TFL Sbjct: 223 SVRERCLEEQKRRRQRATKKISTF-IGTFL 251 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.322 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,980,172 Number of Sequences: 37866 Number of extensions: 639489 Number of successful extensions: 1469 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 1457 Number of HSP's gapped (non-prelim): 15 length of query: 391 length of database: 18,247,518 effective HSP length: 104 effective length of query: 287 effective length of database: 14,309,454 effective search space: 4106813298 effective search space used: 4106813298 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.