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Search of human proteins with 21361361
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21361361 ilvB (bacterial acetolactate synthase)-like [Homo
sapiens]
(632 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21361361 ilvB (bacterial acetolactate synthase)-like [Homo sa... 1255 0.0
gi|93004078 2-hydroxyphytanoyl-CoA lyase [Homo sapiens] 190 3e-48
gi|19111150 angiomotin isoform 2 [Homo sapiens] 35 0.21
gi|166064029 angiomotin isoform 1 [Homo sapiens] 35 0.21
gi|239582741 FERM and PDZ domain containing 1 [Homo sapiens] 34 0.47
gi|151301137 AT-hook transcription factor [Homo sapiens] 33 1.0
gi|239756689 PREDICTED: WD repeat domain 81 [Homo sapiens] 32 1.4
gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens] 32 1.4
gi|239745674 PREDICTED: WD repeat domain 81 [Homo sapiens] 32 1.4
gi|122937486 hypothetical protein LOC646174 [Homo sapiens] 32 1.4
gi|148806891 hypothetical protein LOC54906 [Homo sapiens] 31 4.0
gi|154354966 inner membrane protein, mitochondrial isoform 3 [Ho... 30 5.2
gi|154354962 inner membrane protein, mitochondrial isoform 2 [Ho... 30 5.2
gi|154354964 inner membrane protein, mitochondrial isoform 1 [Ho... 30 5.2
gi|40353729 Ras and Rab interactor 3 [Homo sapiens] 30 6.8
gi|94721239 isoleucine tRNA synthetase [Homo sapiens] 30 8.8
gi|94721241 isoleucine tRNA synthetase [Homo sapiens] 30 8.8
gi|21687188 hypothetical protein LOC146325 [Homo sapiens] 30 8.8
>gi|21361361 ilvB (bacterial acetolactate synthase)-like [Homo
sapiens]
Length = 632
Score = 1255 bits (3247), Expect = 0.0
Identities = 632/632 (100%), Positives = 632/632 (100%)
Query: 1 METPAAAAPAGSLFPSFLLLACGTLVAALLGAAHRLGLFYQLLHKVDKASVRHGGENVAA 60
METPAAAAPAGSLFPSFLLLACGTLVAALLGAAHRLGLFYQLLHKVDKASVRHGGENVAA
Sbjct: 1 METPAAAAPAGSLFPSFLLLACGTLVAALLGAAHRLGLFYQLLHKVDKASVRHGGENVAA 60
Query: 61 VLRAHGVRFIFTLVGGHISPLLVACEKLGIRVVDTRHEVTAVFAADAMARLSGTVGVAAV 120
VLRAHGVRFIFTLVGGHISPLLVACEKLGIRVVDTRHEVTAVFAADAMARLSGTVGVAAV
Sbjct: 61 VLRAHGVRFIFTLVGGHISPLLVACEKLGIRVVDTRHEVTAVFAADAMARLSGTVGVAAV 120
Query: 121 TAGPGLTNTVTAVKNAQMAQSPILLLGGAASTLLQNRGALQAVDQLSLFRPLCKFCVSVR 180
TAGPGLTNTVTAVKNAQMAQSPILLLGGAASTLLQNRGALQAVDQLSLFRPLCKFCVSVR
Sbjct: 121 TAGPGLTNTVTAVKNAQMAQSPILLLGGAASTLLQNRGALQAVDQLSLFRPLCKFCVSVR 180
Query: 181 RVRDIVPTLRAAMAAAQSGTPGPVFVELPVDVLYPYFMVQKEMVPAKPPKGLVGRVVSWY 240
RVRDIVPTLRAAMAAAQSGTPGPVFVELPVDVLYPYFMVQKEMVPAKPPKGLVGRVVSWY
Sbjct: 181 RVRDIVPTLRAAMAAAQSGTPGPVFVELPVDVLYPYFMVQKEMVPAKPPKGLVGRVVSWY 240
Query: 241 LENYLANLFAGAWEPQPEGPLPLDIPQASPQQVQRCVEILSRAKRPLMVLGSQALLTPTS 300
LENYLANLFAGAWEPQPEGPLPLDIPQASPQQVQRCVEILSRAKRPLMVLGSQALLTPTS
Sbjct: 241 LENYLANLFAGAWEPQPEGPLPLDIPQASPQQVQRCVEILSRAKRPLMVLGSQALLTPTS 300
Query: 301 ADKLRAAVETLGVPCFLGGMARGLLGRNHPLHIRENRSAALKKADVIVLAGTVCDFRLSY 360
ADKLRAAVETLGVPCFLGGMARGLLGRNHPLHIRENRSAALKKADVIVLAGTVCDFRLSY
Sbjct: 301 ADKLRAAVETLGVPCFLGGMARGLLGRNHPLHIRENRSAALKKADVIVLAGTVCDFRLSY 360
Query: 361 GRVLSHSSKIIIVNRNREEMLLNSDIFWKPQEAVQGDVGSFVLKLVEGLQGQTWAPDWVE 420
GRVLSHSSKIIIVNRNREEMLLNSDIFWKPQEAVQGDVGSFVLKLVEGLQGQTWAPDWVE
Sbjct: 361 GRVLSHSSKIIIVNRNREEMLLNSDIFWKPQEAVQGDVGSFVLKLVEGLQGQTWAPDWVE 420
Query: 421 ELREADRQKEQTFREKAAMPVAQHLNPVQVLQLVEETLPDNSILVVDGGDFVGTAAHLVQ 480
ELREADRQKEQTFREKAAMPVAQHLNPVQVLQLVEETLPDNSILVVDGGDFVGTAAHLVQ
Sbjct: 421 ELREADRQKEQTFREKAAMPVAQHLNPVQVLQLVEETLPDNSILVVDGGDFVGTAAHLVQ 480
Query: 481 PRGPLRWLDPGAFGTLGVGAGFALGAKLCRPDAEVWCLFGDGAFGYSLIEFDTFVRHKIP 540
PRGPLRWLDPGAFGTLGVGAGFALGAKLCRPDAEVWCLFGDGAFGYSLIEFDTFVRHKIP
Sbjct: 481 PRGPLRWLDPGAFGTLGVGAGFALGAKLCRPDAEVWCLFGDGAFGYSLIEFDTFVRHKIP 540
Query: 541 VMALVGNDAGWTQISREQVPSLGSNVACGLAYTDYHKAAMGLGARGLLLSRENEDQVVKV 600
VMALVGNDAGWTQISREQVPSLGSNVACGLAYTDYHKAAMGLGARGLLLSRENEDQVVKV
Sbjct: 541 VMALVGNDAGWTQISREQVPSLGSNVACGLAYTDYHKAAMGLGARGLLLSRENEDQVVKV 600
Query: 601 LHDAQQQCRDGHPVVVNILIGRTDFRDGSIAV 632
LHDAQQQCRDGHPVVVNILIGRTDFRDGSIAV
Sbjct: 601 LHDAQQQCRDGHPVVVNILIGRTDFRDGSIAV 632
>gi|93004078 2-hydroxyphytanoyl-CoA lyase [Homo sapiens]
Length = 578
Score = 190 bits (483), Expect = 3e-48
Identities = 155/586 (26%), Positives = 266/586 (45%), Gaps = 61/586 (10%)
Query: 54 GGENVAAVLRAHGVRFIFTLVGGHISPLLVACEKLGIRVVDTRHEVTAVFAADAMARLSG 113
G + +A L+ V +IF +VG ++ + +A ++LGI+ + R+E A +AA A+ L+
Sbjct: 16 GAKVIAQALKTQDVEYIFGIVGIPVTEIAIAAQQLGIKYIGMRNEQAACYAASAIGYLTS 75
Query: 114 TVGVAAVTAGPGLTNTVTAVKNAQMAQSPILLLGGAASTLLQNRGALQAVDQLSLFRPLC 173
GV V +GPGL + + + NA M P+L++GG++ + GA Q Q+ R
Sbjct: 76 RPGVCLVVSGPGLIHALGGMANANMNCWPLLVIGGSSERNQETMGAFQEFPQVEACRLYT 135
Query: 174 KFCVSVRRVRDIVPTLRAAMAAAQSGTPGPVFVELPVDVLYPYFMVQKEMVPAKPPKGLV 233
KF + I + A+ ++ G PG +V++P D + +Q + K
Sbjct: 136 KFSARPSSIEAIPFVIEKAVRSSIYGRPGACYVDIPAD----FVNLQVNVNSIK------ 185
Query: 234 GRVVSWYLENYLANLFAGAWEPQPEGPLPLDIPQASPQQVQRCVEILSRAKRPLMVLGSQ 293
Y+E ++ I A V ++ AK+PL+++G
Sbjct: 186 ------YMERCMSP----------------PISMAETSAVCTAASVIRNAKQPLLIIGKG 223
Query: 294 ALLTPTSADKLRAAVETLGVPCFLGGMARGLLGRNHPLHIRENRSAALKKADVIVLAGTV 353
A + ++ VE +P M +G++ NHP + RS AL+ ADVIVL G
Sbjct: 224 AAYAHAE-ESIKKLVEQYKLPFLPTPMGKGVVPDNHPYCVGAARSRALQFADVIVLFGAR 282
Query: 354 CDFRLSYGRVLSHSS--KIIIVNRNREEMLLNSDIFWKPQEAVQGDVGSFVLKLVEGLQG 411
++ L +G + K I V+ EE+ N KP + G++ + +L+E L
Sbjct: 283 LNWILHFGLPPRYQPDVKFIQVDICAEELGNNV----KPAVTLLGNIHAVTKQLLEELDK 338
Query: 412 QTWA----PDWVEELREADRQKEQTFREKAAMPVAQHLNPVQVLQLVEETLPDNSILVVD 467
W W + LRE + E +E A+ + +N V V+E LP + +V +
Sbjct: 339 TPWQYPPESKWWKTLREKMKSNEAASKELASKK-SLPMNYYTVFYHVQEQLPRDCFVVSE 397
Query: 468 GGDFVGTAAHLVQPRGPLRWLDPGAFGTLGVGAGFALGAKLCRPDAE----VWCLFGDGA 523
G + + ++Q P LD G FGT+GVG GFA+ A + D + C+ GD A
Sbjct: 398 GANTMDIGRTVLQNYLPRHRLDAGTFGTMGVGLGFAIAAAVVAKDRSPGQWIICVEGDSA 457
Query: 524 FGYSLIEFDTFVRHKIPVMALVGNDAG---------WTQISREQVPSLGSNVACGLAYTD 574
FG+S +E +T R+ +P++ LV N+ G W ++ + Q + C L +
Sbjct: 458 FGFSGMEVETICRYNLPIILLVVNNNGIYQGFDTDTWKEMLKFQDATAVVPPMCLLPNSH 517
Query: 575 YHKAAMGLGARGLLLSRENEDQVVKVLHDAQQQCRDGHPVVVNILI 620
Y + G +G + + +++ K L Q P ++NI+I
Sbjct: 518 YEQVMTAFGGKGYFV--QTPEELQKSLR--QSLADTTKPSLINIMI 559
>gi|19111150 angiomotin isoform 2 [Homo sapiens]
Length = 675
Score = 35.0 bits (79), Expect = 0.21
Identities = 36/141 (25%), Positives = 51/141 (36%), Gaps = 10/141 (7%)
Query: 79 SPLLVACEKLGIRVVDTRHEV-TAVFAADAMARLSGTVGVAAVTAGPGLTNTVTAVKNAQ 137
+PLL A K G R T+ E T A+A +S VAA +T T +
Sbjct: 439 TPLLSAHSKTGSRDCSTQTERGTESNKTAAVAPISVPAPVAAAATAAAITATAATITTTM 498
Query: 138 MAQSPILLLGGAASTLLQNRGALQAVDQLSLFRPLC----KFCVSVRRVRDIVPTLRAAM 193
+A +P+ + AA A + P SV + P+ AA
Sbjct: 499 VAAAPVAVAAAAAPAAAAAPSPATAAATAAAVSPAAAGQIPAAASVASAAAVAPSAAAAA 558
Query: 194 A-----AAQSGTPGPVFVELP 209
A AA + P P V +P
Sbjct: 559 AVQVAPAAPAPVPAPALVPVP 579
>gi|166064029 angiomotin isoform 1 [Homo sapiens]
Length = 1084
Score = 35.0 bits (79), Expect = 0.21
Identities = 36/141 (25%), Positives = 51/141 (36%), Gaps = 10/141 (7%)
Query: 79 SPLLVACEKLGIRVVDTRHEV-TAVFAADAMARLSGTVGVAAVTAGPGLTNTVTAVKNAQ 137
+PLL A K G R T+ E T A+A +S VAA +T T +
Sbjct: 848 TPLLSAHSKTGSRDCSTQTERGTESNKTAAVAPISVPAPVAAAATAAAITATAATITTTM 907
Query: 138 MAQSPILLLGGAASTLLQNRGALQAVDQLSLFRPLC----KFCVSVRRVRDIVPTLRAAM 193
+A +P+ + AA A + P SV + P+ AA
Sbjct: 908 VAAAPVAVAAAAAPAAAAAPSPATAAATAAAVSPAAAGQIPAAASVASAAAVAPSAAAAA 967
Query: 194 A-----AAQSGTPGPVFVELP 209
A AA + P P V +P
Sbjct: 968 AVQVAPAAPAPVPAPALVPVP 988
>gi|239582741 FERM and PDZ domain containing 1 [Homo sapiens]
Length = 1578
Score = 33.9 bits (76), Expect = 0.47
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 204 VFVELPVDVLYPYFMVQKEMV-PAKPPKGLVGRVVSWYLENYLANLFAGAW---EPQPEG 259
+FVEL +D P F + K+ V PA PP+G+ + +A + W P+P
Sbjct: 1200 LFVELDLD---PDFFLGKQTVSPAVPPEGIKAEAPNHVTGQDIAPRDSPEWVCFNPEPSL 1256
Query: 260 PLPLDIPQASP 270
P PL PQ P
Sbjct: 1257 PEPLPCPQEDP 1267
>gi|151301137 AT-hook transcription factor [Homo sapiens]
Length = 1439
Score = 32.7 bits (73), Expect = 1.0
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 405 LVEGLQGQTWAPDWVEELREADRQKEQTFREKAAMPVAQHLNPVQVLQLVEETLP 459
L +G Q + WA W E+ R+ DR Q++ E+ P A ++ +L ++ LP
Sbjct: 15 LGKGPQRRRWA--WAEDKRDVDRSSSQSWEEERLFPNATSPELLEDFRLAQQHLP 67
>gi|239756689 PREDICTED: WD repeat domain 81 [Homo sapiens]
Length = 1941
Score = 32.3 bits (72), Expect = 1.4
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 435 EKAAMPVAQHLNPVQVLQLVEETLPDNSILVVDGGDFVGTAAHLVQPRGPLRWL---DPG 491
E+ + + + NP+Q L+ +E+T N + GG VQP PL+ L D
Sbjct: 715 EEGRILLPEGFNPMQALEELEKT--GNFLAKGLGGLLEVPEQPRVQPAVPLQCLLHRDMQ 772
Query: 492 AFGTLGVGAGFALGAKLCRPDAEVWCLF 519
A G L FA + +PDA +W F
Sbjct: 773 ALGVLLAEMVFATRVRTLQPDAPLWVRF 800
>gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens]
Length = 2240
Score = 32.3 bits (72), Expect = 1.4
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 435 EKAAMPVAQHLNPVQVLQLVEETLPDNSILVVDGGDFVGTAAHLVQPRGPLRWL---DPG 491
E+ + + + NP+Q L+ +E+T N + GG VQP PL+ L D
Sbjct: 1014 EEGRILLPEGFNPMQALEELEKT--GNFLAKGLGGLLEVPEQPRVQPAVPLQCLLHRDMQ 1071
Query: 492 AFGTLGVGAGFALGAKLCRPDAEVWCLF 519
A G L FA + +PDA +W F
Sbjct: 1072 ALGVLLAEMVFATRVRTLQPDAPLWVRF 1099
>gi|239745674 PREDICTED: WD repeat domain 81 [Homo sapiens]
Length = 1941
Score = 32.3 bits (72), Expect = 1.4
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 435 EKAAMPVAQHLNPVQVLQLVEETLPDNSILVVDGGDFVGTAAHLVQPRGPLRWL---DPG 491
E+ + + + NP+Q L+ +E+T N + GG VQP PL+ L D
Sbjct: 715 EEGRILLPEGFNPMQALEELEKT--GNFLAKGLGGLLEVPEQPRVQPAVPLQCLLHRDMQ 772
Query: 492 AFGTLGVGAGFALGAKLCRPDAEVWCLF 519
A G L FA + +PDA +W F
Sbjct: 773 ALGVLLAEMVFATRVRTLQPDAPLWVRF 800
>gi|122937486 hypothetical protein LOC646174 [Homo sapiens]
Length = 182
Score = 32.3 bits (72), Expect = 1.4
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 243 NYLANLFAGAWEPQPEGPL-PLDIPQASPQQVQRCVEILSRAKRPLMVLGSQALLTPTSA 301
++L L AG PQPEG LD+PQ + L A+ P LGS A +
Sbjct: 82 HWLGRLMAGGCLPQPEGTAWALDLPQGTLGPRNSLCSALLEARLPRDSLGSSASSSSMDP 141
Query: 302 DK 303
DK
Sbjct: 142 DK 143
>gi|148806891 hypothetical protein LOC54906 [Homo sapiens]
Length = 2430
Score = 30.8 bits (68), Expect = 4.0
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 18/99 (18%)
Query: 256 QPEGPLPLDIPQ-----------------ASPQQVQRCVEILSRAKRPLMVLGSQALLTP 298
Q E PLP+ +P SP + RC + + L+ L S+ LL
Sbjct: 1142 QKETPLPVSLPSDKTMVMEALSLAKSSSHLSPSEEVRCTQDFLSQTQSLLGLSSEGLLEL 1201
Query: 299 TSAD-KLRAAVETLGVPCFLGGMARGLLGRNHPLHIREN 336
T + +A TLG C L ++ G L +R+N
Sbjct: 1202 TQVEVDSSSASTTLGRQCSLNCISSGCHTSGDSLELRKN 1240
>gi|154354966 inner membrane protein, mitochondrial isoform 3 [Homo
sapiens]
Length = 747
Score = 30.4 bits (67), Expect = 5.2
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 260 PLPLDIPQASPQQVQRCVEILSRAKRPLMVLGSQALLTPTSADKLRAAVETLGVP 314
PLP Q+ P ++ E++ +K+P L Q TP SA A +TL VP
Sbjct: 98 PLPKKSIQSGPLKISSVSEVMKESKQPASQLQKQKGDTPASA----TAGDTLSVP 148
>gi|154354962 inner membrane protein, mitochondrial isoform 2 [Homo
sapiens]
Length = 757
Score = 30.4 bits (67), Expect = 5.2
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 260 PLPLDIPQASPQQVQRCVEILSRAKRPLMVLGSQALLTPTSADK-------LRAAVETLG 312
PLP Q+ P ++ E++ +K+P L Q TP SA + AA +TL
Sbjct: 98 PLPKKSIQSGPLKISSVSEVMKESKQPASQLQKQKGDTPASATAPTEAAQIISAAGDTLS 157
Query: 313 VP 314
VP
Sbjct: 158 VP 159
>gi|154354964 inner membrane protein, mitochondrial isoform 1 [Homo
sapiens]
Length = 758
Score = 30.4 bits (67), Expect = 5.2
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 260 PLPLDIPQASPQQVQRCVEILSRAKRPLMVLGSQALLTPTSADK-------LRAAVETLG 312
PLP Q+ P ++ E++ +K+P L Q TP SA + AA +TL
Sbjct: 98 PLPKKSIQSGPLKISSVSEVMKESKQPASQLQKQKGDTPASATAPTEAAQIISAAGDTLS 157
Query: 313 VP 314
VP
Sbjct: 158 VP 159
>gi|40353729 Ras and Rab interactor 3 [Homo sapiens]
Length = 985
Score = 30.0 bits (66), Expect = 6.8
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 293 QALLTPT--SADKLRAAVETLGVPCFLGGMARGLLGRNHPLHIRENRSAALKKADVIVLA 350
+AL+ P S ++L A VE+ C L + + H +H ++ LK+ +++LA
Sbjct: 662 KALVDPALHSEEELEAIVESALYKCVLKPLKEAINSCLHQIHSKDGSLQQLKENQLVILA 721
Query: 351 GTVCD 355
T D
Sbjct: 722 TTTTD 726
>gi|94721239 isoleucine tRNA synthetase [Homo sapiens]
Length = 1262
Score = 29.6 bits (65), Expect = 8.8
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 327 RNHPLHIRENRSAALKKADVIVLAG-TVCDFRLSYGRVLSHSSKIIIVNRNREEMLLNSD 385
+N L + + + + D++ L+G T+C S +++ SS ++ N + LLN+
Sbjct: 1125 KNTELAVFHDETEIQNQTDLLSLSGKTLCVTAGSAPSLINSSSTLLCQYINLQ--LLNA- 1181
Query: 386 IFWKPQEAVQGDVGSFVLKLVEGLQGQT 413
KPQE + G VG+ +L+ G G T
Sbjct: 1182 ---KPQECLMGTVGTLLLENPLGQNGLT 1206
>gi|94721241 isoleucine tRNA synthetase [Homo sapiens]
Length = 1262
Score = 29.6 bits (65), Expect = 8.8
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 327 RNHPLHIRENRSAALKKADVIVLAG-TVCDFRLSYGRVLSHSSKIIIVNRNREEMLLNSD 385
+N L + + + + D++ L+G T+C S +++ SS ++ N + LLN+
Sbjct: 1125 KNTELAVFHDETEIQNQTDLLSLSGKTLCVTAGSAPSLINSSSTLLCQYINLQ--LLNA- 1181
Query: 386 IFWKPQEAVQGDVGSFVLKLVEGLQGQT 413
KPQE + G VG+ +L+ G G T
Sbjct: 1182 ---KPQECLMGTVGTLLLENPLGQNGLT 1206
>gi|21687188 hypothetical protein LOC146325 [Homo sapiens]
Length = 571
Score = 29.6 bits (65), Expect = 8.8
Identities = 45/162 (27%), Positives = 66/162 (40%), Gaps = 31/162 (19%)
Query: 186 VPTLRAAMAAAQ------SGTPGPVFVELPVDVLYPYFMVQKEMVPAKPPKGLVGRVVSW 239
+P +AA+A A SGTP P +++PV L P+ + P P G G +
Sbjct: 276 LPAGKAALAKAPVSPRSPSGTPAPGLLKVPVPGLGPW----PRVTPRDP--GQEGELERA 329
Query: 240 YLENYLANLFAGAWEPQPEGPLPLDIPQASPQQVQRCVEILSRAKRPLMVLGSQALLTPT 299
+ L G+ L++P+ASP + C SR+ P GS +L P
Sbjct: 330 AQSDPRRRLSLGS---------RLELPKASPSLTRFC----SRSSLP---TGSSVMLWPE 373
Query: 300 SADKLRAAVETLGVPCFLGGMARGLLGRNHPLHIRENRSAAL 341
D ET G L RG + P H+ E+ + AL
Sbjct: 374 DGDP--GGPETPGPEGPLPLQPRGPV-PGSPEHVGEDLTRAL 412
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,156,238
Number of Sequences: 37866
Number of extensions: 1109797
Number of successful extensions: 2678
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2666
Number of HSP's gapped (non-prelim): 26
length of query: 632
length of database: 18,247,518
effective HSP length: 108
effective length of query: 524
effective length of database: 14,157,990
effective search space: 7418786760
effective search space used: 7418786760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.