Guide to the Human Genome
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Name: LOC400682 Sequence: fasta or formatted (196aa) NCBI GI: 169213566
Description:

PREDICTED: similar to hCG1776607

Not currently referenced in the text

Other entries for this name:
alt prot {196aa} PREDICTED: similar to hCG1776607
alt prot {196aa} PREDICTED: similar to hCG1776607
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.6          7           1
 C cysteine            8.2         16           1
 D aspartate           1.0          2           1
 E glutamate          11.2         22           2
 F phenylalanine       5.6         11           1
 G glycine             6.1         12           1
 H histidine           9.7         19           1
 I isoleucine          5.1         10           2
 K lysine             12.8         25           1
 L leucine             4.1          8           2
 M methionine          0.5          1           1
 N asparagine          3.1          6           1
 P proline             2.6          5           1
 Q glutamine           1.5          3           1
 R arginine            5.1         10           2
 S serine              6.1         12           2
 T threonine           9.2         18           2
 V valine              0.5          1           1
 W tryptophan          0.0          0           0
 Y tyrosine            4.1          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1776607 
LOC400682             0.983   PREDICTED: similar to hCG1776607 
LOC400682             0.978   PREDICTED: similar to hCG1776607 
ZNF100                0.815   zinc finger protein 100 
ZNF430                0.788   zinc finger protein 430 
ZNF431                0.783   zinc finger protein 431 
ZNF714                0.727   zinc finger protein 714 
ZNF492                0.723   zinc finger protein 492 
ZNF98                 0.723   zinc finger protein 98 
ZNF737                0.689   zinc finger protein 737 
ZNF737                0.689   PREDICTED: zinc finger protein 737 
ZNF737                0.689   PREDICTED: zinc finger protein 737 
ZNF737                0.689   PREDICTED: zinc finger protein 737 
ZNF66                 0.686   PREDICTED: zinc finger protein 66 
ZNF66                 0.686   PREDICTED: zinc finger protein 66 
ZNF66                 0.686   PREDICTED: zinc finger protein 66 
ZNF92                 0.681   zinc finger protein 92 isoform 1 
ZNF92                 0.681   zinc finger protein 92 isoform 2 
ZNF85                 0.681   zinc finger protein 85 
ZNF681                0.681   zinc finger protein 681 
ZNF43                 0.679   zinc finger protein 43 
ZNF708                0.669   zinc finger protein 708 
ZNF726                0.667   PREDICTED: zinc finger protein 726 
ZNF726                0.667   PREDICTED: zinc finger protein 726 
ZNF726                0.667   PREDICTED: zinc finger protein 726 
ZNF257                0.667   zinc finger protein 257 
ZNF91                 0.664   zinc finger protein 91 
ZNF682                0.664   zinc finger protein 682 isoform 2 
ZNF682                0.664   zinc finger protein 682 isoform 1 
ZNF493                0.662   zinc finger protein 493 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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