Guide to the Human Genome
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Name: LOC400682 Sequence: fasta or formatted (196aa) NCBI GI: 239757208
Description:

PREDICTED: similar to hCG1776607

Not currently referenced in the text

Other entries for this name:
alt prot {196aa} PREDICTED: similar to hCG1776607
alt prot {196aa} PREDICTED: similar to hCG1776607
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6          9           1
 C cysteine            8.2         16           1
 D aspartate           1.0          2           1
 E glutamate          10.7         21           2
 F phenylalanine       5.6         11           1
 G glycine             6.1         12           1
 H histidine           9.7         19           1
 I isoleucine          4.6          9           2
 K lysine             13.3         26           1
 L leucine             4.1          8           2
 M methionine          0.5          1           1
 N asparagine          3.1          6           1
 P proline             2.0          4           1
 Q glutamine           1.5          3           1
 R arginine            5.1         10           2
 S serine              6.1         12           2
 T threonine           9.2         18           2
 V valine              0.5          1           1
 W tryptophan          0.0          0           0
 Y tyrosine            4.1          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1776607 
LOC400682             0.998   PREDICTED: similar to hCG1776607 
LOC400682             0.983   PREDICTED: similar to hCG1776607 
ZNF430                0.795   zinc finger protein 430 
ZNF431                0.795   zinc finger protein 431 
ZNF100                0.790   zinc finger protein 100 
ZNF714                0.733   zinc finger protein 714 
ZNF492                0.731   zinc finger protein 492 
ZNF98                 0.731   zinc finger protein 98 
ZNF43                 0.697   zinc finger protein 43 
ZNF737                0.694   zinc finger protein 737 
ZNF66                 0.694   PREDICTED: zinc finger protein 66 
ZNF737                0.694   PREDICTED: zinc finger protein 737 
ZNF66                 0.694   PREDICTED: zinc finger protein 66 
ZNF737                0.694   PREDICTED: zinc finger protein 737 
ZNF66                 0.694   PREDICTED: zinc finger protein 66 
ZNF737                0.694   PREDICTED: zinc finger protein 737 
ZNF92                 0.692   zinc finger protein 92 isoform 1 
ZNF92                 0.692   zinc finger protein 92 isoform 2 
ZNF85                 0.689   zinc finger protein 85 
ZNF681                0.689   zinc finger protein 681 
ZNF708                0.677   zinc finger protein 708 
ZNF726                0.675   PREDICTED: zinc finger protein 726 
ZNF726                0.675   PREDICTED: zinc finger protein 726 
ZNF726                0.675   PREDICTED: zinc finger protein 726 
ZNF257                0.675   zinc finger protein 257 
ZNF91                 0.672   zinc finger protein 91 
ZNF682                0.672   zinc finger protein 682 isoform 2 
ZNF682                0.672   zinc finger protein 682 isoform 1 
LOC646864             0.672   PREDICTED: similar to hCG36734 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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