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Search of human proteins with 21040275
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21040275 AlkB homolog 3 [Homo sapiens]
(286 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21040275 AlkB homolog 3 [Homo sapiens] 608 e-174
gi|224451107 AlkB homolog 2 [Homo sapiens] 110 1e-24
gi|48717226 AlkB homolog 2 [Homo sapiens] 110 1e-24
gi|224451103 AlkB homolog 2 [Homo sapiens] 110 1e-24
gi|8923019 alkB, alkylation repair homolog 4 [Homo sapiens] 32 0.64
gi|169168296 PREDICTED: hypothetical protein [Homo sapiens] 31 1.1
gi|169168044 PREDICTED: hypothetical protein [Homo sapiens] 31 1.1
gi|169167512 PREDICTED: hypothetical protein [Homo sapiens] 31 1.1
gi|224967054 SRY (sex determining region Y)-box 6 isoform 4 [Hom... 31 1.4
gi|224967050 SRY (sex determining region Y)-box 6 isoform 3 [Hom... 31 1.4
gi|70909338 SRY (sex determining region Y)-box 6 isoform 1 [Homo... 31 1.4
gi|71037389 SRY (sex determining region Y)-box 6 isoform 2 [Homo... 31 1.4
gi|23397670 zinc finger protein 280B [Homo sapiens] 30 3.2
gi|48717495 chondroitin polymerizing factor 2 [Homo sapiens] 29 4.1
gi|239755947 PREDICTED: hypothetical protein [Homo sapiens] 29 4.1
gi|239750454 PREDICTED: hypothetical protein XP_002347366 [Homo ... 29 4.1
gi|239744756 PREDICTED: hypothetical protein XP_002343266 [Homo ... 29 4.1
gi|194294523 intersectin 2 isoform 3 [Homo sapiens] 29 4.1
gi|194294521 intersectin 2 isoform 1 [Homo sapiens] 29 4.1
gi|194294525 intersectin 2 isoform 2 [Homo sapiens] 29 4.1
gi|167466198 intercellular adhesion molecule 1 precursor [Homo s... 28 7.1
gi|209954808 ets-related isoform 4 [Homo sapiens] 28 9.2
gi|33667107 ets-related isoform 1 [Homo sapiens] 28 9.2
gi|209954797 ets-related isoform 3 [Homo sapiens] 28 9.2
gi|239754787 PREDICTED: hypothetical protein [Homo sapiens] 28 9.2
gi|239749297 PREDICTED: hypothetical protein XP_002346987 [Homo ... 28 9.2
gi|239743391 PREDICTED: hypothetical protein XP_002342836 [Homo ... 28 9.2
gi|239509088 PREDICTED: hypothetical protein [Homo sapiens] 28 9.2
>gi|21040275 AlkB homolog 3 [Homo sapiens]
Length = 286
Score = 608 bits (1569), Expect = e-174
Identities = 286/286 (100%), Positives = 286/286 (100%)
Query: 1 MEEKRRRARVQGAWAAPVKSQAIAQPATTAKSHLHQKPGQTWKNKEHHLSDREFVFKEPQ 60
MEEKRRRARVQGAWAAPVKSQAIAQPATTAKSHLHQKPGQTWKNKEHHLSDREFVFKEPQ
Sbjct: 1 MEEKRRRARVQGAWAAPVKSQAIAQPATTAKSHLHQKPGQTWKNKEHHLSDREFVFKEPQ 60
Query: 61 QVVRRAPEPRVIDREGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTG 120
QVVRRAPEPRVIDREGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTG
Sbjct: 61 QVVRRAPEPRVIDREGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTG 120
Query: 121 IREDITYQQPRLTAWYGELPYTYSRITMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNL 180
IREDITYQQPRLTAWYGELPYTYSRITMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNL
Sbjct: 121 IREDITYQQPRLTAWYGELPYTYSRITMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNL 180
Query: 181 YRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENGDYTYVERVKIPLD 240
YRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENGDYTYVERVKIPLD
Sbjct: 181 YRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENGDYTYVERVKIPLD 240
Query: 241 HGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYPDPRGAPW 286
HGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYPDPRGAPW
Sbjct: 241 HGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYPDPRGAPW 286
>gi|224451107 AlkB homolog 2 [Homo sapiens]
Length = 261
Score = 110 bits (275), Expect = 1e-24
Identities = 71/192 (36%), Positives = 99/192 (51%), Gaps = 7/192 (3%)
Query: 91 CLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDIT---YQQPRLTAWYGE--LPYTYSR 145
C Y EAD I ++L ++V + R + + PR A YG+ L YT+S
Sbjct: 67 CSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSG 126
Query: 146 ITMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIA 205
+T+ P P W PVL +++ + TG TFN +L N Y++ D + H DDE L IA
Sbjct: 127 LTLSPKP-WIPVLERIRDHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAPGSPIA 185
Query: 206 SLSFGATRTFEMRKKPPPEENGDYTYVERVKIPLDHGTLLIMEGATQADWQHRVPKEYHS 265
S+SFGA R F R K ++ V V++PL HG+LL+M T W H +P
Sbjct: 186 SVSFGACRDFVFRHKDSRGKSPS-RRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKV 244
Query: 266 REPRVNLTFRTV 277
PRVNLTFR +
Sbjct: 245 LAPRVNLTFRKI 256
>gi|48717226 AlkB homolog 2 [Homo sapiens]
Length = 261
Score = 110 bits (275), Expect = 1e-24
Identities = 71/192 (36%), Positives = 99/192 (51%), Gaps = 7/192 (3%)
Query: 91 CLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDIT---YQQPRLTAWYGE--LPYTYSR 145
C Y EAD I ++L ++V + R + + PR A YG+ L YT+S
Sbjct: 67 CSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSG 126
Query: 146 ITMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIA 205
+T+ P P W PVL +++ + TG TFN +L N Y++ D + H DDE L IA
Sbjct: 127 LTLSPKP-WIPVLERIRDHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAPGSPIA 185
Query: 206 SLSFGATRTFEMRKKPPPEENGDYTYVERVKIPLDHGTLLIMEGATQADWQHRVPKEYHS 265
S+SFGA R F R K ++ V V++PL HG+LL+M T W H +P
Sbjct: 186 SVSFGACRDFVFRHKDSRGKSPS-RRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKV 244
Query: 266 REPRVNLTFRTV 277
PRVNLTFR +
Sbjct: 245 LAPRVNLTFRKI 256
>gi|224451103 AlkB homolog 2 [Homo sapiens]
Length = 261
Score = 110 bits (275), Expect = 1e-24
Identities = 71/192 (36%), Positives = 99/192 (51%), Gaps = 7/192 (3%)
Query: 91 CLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDIT---YQQPRLTAWYGE--LPYTYSR 145
C Y EAD I ++L ++V + R + + PR A YG+ L YT+S
Sbjct: 67 CSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSG 126
Query: 146 ITMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIA 205
+T+ P P W PVL +++ + TG TFN +L N Y++ D + H DDE L IA
Sbjct: 127 LTLSPKP-WIPVLERIRDHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAPGSPIA 185
Query: 206 SLSFGATRTFEMRKKPPPEENGDYTYVERVKIPLDHGTLLIMEGATQADWQHRVPKEYHS 265
S+SFGA R F R K ++ V V++PL HG+LL+M T W H +P
Sbjct: 186 SVSFGACRDFVFRHKDSRGKSPS-RRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKV 244
Query: 266 REPRVNLTFRTV 277
PRVNLTFR +
Sbjct: 245 LAPRVNLTFRKI 256
>gi|8923019 alkB, alkylation repair homolog 4 [Homo sapiens]
Length = 302
Score = 32.0 bits (71), Expect = 0.64
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 235 VKIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFR 275
V IPL +LL++ GA + W+H + + H RV +TFR
Sbjct: 232 VAIPLPARSLLVLTGAARHQWKHAIHRR-HIEARRVCVTFR 271
>gi|169168296 PREDICTED: hypothetical protein [Homo sapiens]
Length = 359
Score = 31.2 bits (69), Expect = 1.1
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 187 SVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENG 227
SV H+D +LG CP +F R R +PP E G
Sbjct: 144 SVGHHADKAVTLGGCPRSTGAAFARPRVAHSRGRPPAEVEG 184
>gi|169168044 PREDICTED: hypothetical protein [Homo sapiens]
Length = 359
Score = 31.2 bits (69), Expect = 1.1
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 187 SVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENG 227
SV H+D +LG CP +F R R +PP E G
Sbjct: 144 SVGHHADKAVTLGGCPRSTGAAFARPRVAHSRGRPPAEVEG 184
>gi|169167512 PREDICTED: hypothetical protein [Homo sapiens]
Length = 442
Score = 31.2 bits (69), Expect = 1.1
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 187 SVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENG 227
SV H+D +LG CP +F R R +PP E G
Sbjct: 227 SVGHHADKAVTLGGCPRSTGAAFARPRVAHSRGRPPAEVEG 267
>gi|224967054 SRY (sex determining region Y)-box 6 isoform 4 [Homo
sapiens]
Length = 841
Score = 30.8 bits (68), Expect = 1.4
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 138 ELPYTYSRITMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDDEPS 197
ELP S T++ + W VL + + R+E N+ LC+LY S H DE S
Sbjct: 68 ELPTLVS--TIQQDADWDSVLSS-QQRMESE-----NNKLCSLYSFRNTSTSPHKPDEGS 119
Query: 198 LGRCPIIASLSFGATRTFEMRK 219
R I+ S++FG T E RK
Sbjct: 120 RDR-EIMTSVTFG---TPERRK 137
>gi|224967050 SRY (sex determining region Y)-box 6 isoform 3 [Homo
sapiens]
Length = 801
Score = 30.8 bits (68), Expect = 1.4
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 138 ELPYTYSRITMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDDEPS 197
ELP S T++ + W VL + + R+E N+ LC+LY S H DE S
Sbjct: 55 ELPTLVS--TIQQDADWDSVLSS-QQRMESE-----NNKLCSLYSFRNTSTSPHKPDEGS 106
Query: 198 LGRCPIIASLSFGATRTFEMRK 219
R I+ S++FG T E RK
Sbjct: 107 RDR-EIMTSVTFG---TPERRK 124
>gi|70909338 SRY (sex determining region Y)-box 6 isoform 1 [Homo
sapiens]
Length = 804
Score = 30.8 bits (68), Expect = 1.4
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 138 ELPYTYSRITMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDDEPS 197
ELP S T++ + W VL + + R+E N+ LC+LY S H DE S
Sbjct: 58 ELPTLVS--TIQQDADWDSVLSS-QQRMESE-----NNKLCSLYSFRNTSTSPHKPDEGS 109
Query: 198 LGRCPIIASLSFGATRTFEMRK 219
R I+ S++FG T E RK
Sbjct: 110 RDR-EIMTSVTFG---TPERRK 127
>gi|71037389 SRY (sex determining region Y)-box 6 isoform 2 [Homo
sapiens]
Length = 808
Score = 30.8 bits (68), Expect = 1.4
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 138 ELPYTYSRITMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDDEPS 197
ELP S T++ + W VL + + R+E N+ LC+LY S H DE S
Sbjct: 55 ELPTLVS--TIQQDADWDSVLSS-QQRMESE-----NNKLCSLYSFRNTSTSPHKPDEGS 106
Query: 198 LGRCPIIASLSFGATRTFEMRK 219
R I+ S++FG T E RK
Sbjct: 107 RDR-EIMTSVTFG---TPERRK 124
>gi|23397670 zinc finger protein 280B [Homo sapiens]
Length = 543
Score = 29.6 bits (65), Expect = 3.2
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 12/59 (20%)
Query: 41 TWKNKEHHLSDREFVFKEPQQVVRRAPEPRVIDREGVYEISLSPTGVSRVCLYPGFVDV 99
T+K K H + +FK+P+Q+ PE +V ++SL P L PG VDV
Sbjct: 471 TFKEKMEHKTQCHQMFKKPKQLEGLPPETKV-----TIQVSLEP-------LQPGSVDV 517
>gi|48717495 chondroitin polymerizing factor 2 [Homo sapiens]
Length = 772
Score = 29.3 bits (64), Expect = 4.1
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 198 LGRCPIIASLSFGAT--------RTFEMRKKPPPEENGDYTYVERVKI-PLDHGTLL 245
LGRC +I SL G R+FE+ K PE+ G ++ + P+ GTL+
Sbjct: 259 LGRC-LIDSLGVGCVSQHQGQQYRSFELAKNRDPEKEGSSAFLSAFAVHPVSEGTLM 314
>gi|239755947 PREDICTED: hypothetical protein [Homo sapiens]
Length = 129
Score = 29.3 bits (64), Expect = 4.1
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 4/85 (4%)
Query: 1 MEEKRRRARVQGAWAAPVKSQAIAQPATTAKSHLHQKPGQTWKNKEHHLSDREFVFKEPQ 60
+ KR +W AP+ P + P + W + L V PQ
Sbjct: 18 LPRKRPLPASDPSWGAPITEAR--GPGLRSNGRHSSSPHRAWSAETTQLEG--LVESVPQ 73
Query: 61 QVVRRAPEPRVIDREGVYEISLSPT 85
+ R P+PR I R G+ S T
Sbjct: 74 KATDRMPDPRPISRHGLCAFHPSTT 98
>gi|239750454 PREDICTED: hypothetical protein XP_002347366 [Homo
sapiens]
Length = 144
Score = 29.3 bits (64), Expect = 4.1
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 4/85 (4%)
Query: 1 MEEKRRRARVQGAWAAPVKSQAIAQPATTAKSHLHQKPGQTWKNKEHHLSDREFVFKEPQ 60
+ KR +W AP+ P + P + W + L V PQ
Sbjct: 33 LPRKRPLPASDPSWGAPITEAR--GPGLRSNGRHSSSPHRAWSAETTQLEG--LVESVPQ 88
Query: 61 QVVRRAPEPRVIDREGVYEISLSPT 85
+ R P+PR I R G+ S T
Sbjct: 89 KATDRMPDPRPISRHGLCAFHPSTT 113
>gi|239744756 PREDICTED: hypothetical protein XP_002343266 [Homo
sapiens]
Length = 140
Score = 29.3 bits (64), Expect = 4.1
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 4/85 (4%)
Query: 1 MEEKRRRARVQGAWAAPVKSQAIAQPATTAKSHLHQKPGQTWKNKEHHLSDREFVFKEPQ 60
+ KR +W AP+ P + P + W + L V PQ
Sbjct: 29 LPRKRPLPASDPSWGAPITEAR--GPGLRSNGRHSSSPHRAWSAETTQLEG--LVESVPQ 84
Query: 61 QVVRRAPEPRVIDREGVYEISLSPT 85
+ R P+PR I R G+ S T
Sbjct: 85 KATDRMPDPRPISRHGLCAFHPSTT 109
>gi|194294523 intersectin 2 isoform 3 [Homo sapiens]
Length = 1670
Score = 29.3 bits (64), Expect = 4.1
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 2 EEKRRRARVQGAWAAPVKSQAIAQPATTAKSHLHQKPGQTWKNKEHHLSDREFVFKEPQQ 61
E+KR+ +G + QA+ + QK + W+ K+ L ++E +K+ +
Sbjct: 364 EDKRKANYERGNMELEKRRQALMEQQQREAERKAQKEKEEWERKQRELQEQE--WKKQLE 421
Query: 62 VVRRAPEPRVIDRE 75
+ +R + R ++R+
Sbjct: 422 LEKRLEKQRELERQ 435
>gi|194294521 intersectin 2 isoform 1 [Homo sapiens]
Length = 1697
Score = 29.3 bits (64), Expect = 4.1
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 2 EEKRRRARVQGAWAAPVKSQAIAQPATTAKSHLHQKPGQTWKNKEHHLSDREFVFKEPQQ 61
E+KR+ +G + QA+ + QK + W+ K+ L ++E +K+ +
Sbjct: 364 EDKRKANYERGNMELEKRRQALMEQQQREAERKAQKEKEEWERKQRELQEQE--WKKQLE 421
Query: 62 VVRRAPEPRVIDRE 75
+ +R + R ++R+
Sbjct: 422 LEKRLEKQRELERQ 435
>gi|194294525 intersectin 2 isoform 2 [Homo sapiens]
Length = 1249
Score = 29.3 bits (64), Expect = 4.1
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 2 EEKRRRARVQGAWAAPVKSQAIAQPATTAKSHLHQKPGQTWKNKEHHLSDREFVFKEPQQ 61
E+KR+ +G + QA+ + QK + W+ K+ L ++E +K+ +
Sbjct: 364 EDKRKANYERGNMELEKRRQALMEQQQREAERKAQKEKEEWERKQRELQEQE--WKKQLE 421
Query: 62 VVRRAPEPRVIDRE 75
+ +R + R ++R+
Sbjct: 422 LEKRLEKQRELERQ 435
>gi|167466198 intercellular adhesion molecule 1 precursor [Homo
sapiens]
Length = 532
Score = 28.5 bits (62), Expect = 7.1
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 141 YTYSRITMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKD 186
+T R+ + P P W PV + L R + G +L L R EK+
Sbjct: 111 WTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKE 156
>gi|209954808 ets-related isoform 4 [Homo sapiens]
Length = 387
Score = 28.1 bits (61), Expect = 9.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 117 QRTGIREDITYQQPRLTAWYGELPYTYSRITMEPNPHWHP 156
QR R D+ Y+ PR +AW G T +P+P P
Sbjct: 150 QRITTRPDLPYEPPRRSAWTGHGHPTPQSKAAQPSPSTVP 189
>gi|33667107 ets-related isoform 1 [Homo sapiens]
Length = 479
Score = 28.1 bits (61), Expect = 9.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 117 QRTGIREDITYQQPRLTAWYGELPYTYSRITMEPNPHWHP 156
QR R D+ Y+ PR +AW G T +P+P P
Sbjct: 242 QRITTRPDLPYEPPRRSAWTGHGHPTPQSKAAQPSPSTVP 281
>gi|209954797 ets-related isoform 3 [Homo sapiens]
Length = 486
Score = 28.1 bits (61), Expect = 9.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 117 QRTGIREDITYQQPRLTAWYGELPYTYSRITMEPNPHWHP 156
QR R D+ Y+ PR +AW G T +P+P P
Sbjct: 249 QRITTRPDLPYEPPRRSAWTGHGHPTPQSKAAQPSPSTVP 288
>gi|239754787 PREDICTED: hypothetical protein [Homo sapiens]
Length = 179
Score = 28.1 bits (61), Expect = 9.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 4 KRRRARVQGAWAAPVKSQAIAQPATTAKSHLHQK 37
+ R R GAW P S+A A A SHL ++
Sbjct: 118 REERERAAGAWRRPTPSRAQASAAPLPGSHLERE 151
>gi|239749297 PREDICTED: hypothetical protein XP_002346987 [Homo
sapiens]
Length = 179
Score = 28.1 bits (61), Expect = 9.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 4 KRRRARVQGAWAAPVKSQAIAQPATTAKSHLHQK 37
+ R R GAW P S+A A A SHL ++
Sbjct: 118 REERERAAGAWRRPTPSRAQASAAPLPGSHLERE 151
>gi|239743391 PREDICTED: hypothetical protein XP_002342836 [Homo
sapiens]
Length = 179
Score = 28.1 bits (61), Expect = 9.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 4 KRRRARVQGAWAAPVKSQAIAQPATTAKSHLHQK 37
+ R R GAW P S+A A A SHL ++
Sbjct: 118 REERERAAGAWRRPTPSRAQASAAPLPGSHLERE 151
>gi|239509088 PREDICTED: hypothetical protein [Homo sapiens]
Length = 179
Score = 28.1 bits (61), Expect = 9.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 4 KRRRARVQGAWAAPVKSQAIAQPATTAKSHLHQK 37
+ R R GAW P S+A A A SHL ++
Sbjct: 118 REERERAAGAWRRPTPSRAQASAAPLPGSHLERE 151
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,255,614
Number of Sequences: 37866
Number of extensions: 643202
Number of successful extensions: 1396
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1368
Number of HSP's gapped (non-prelim): 35
length of query: 286
length of database: 18,247,518
effective HSP length: 101
effective length of query: 185
effective length of database: 14,423,052
effective search space: 2668264620
effective search space used: 2668264620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.