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Search of human proteins with 210147443
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|210147443 hypothetical protein LOC552889 [Homo sapiens]
(97 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|210147443 hypothetical protein LOC552889 [Homo sapiens] 204 9e-54
gi|149588534 ataxin 7-like 3 isoform b [Homo sapiens] 99 9e-22
gi|149588870 ataxin 7-like 3 isoform a [Homo sapiens] 99 9e-22
gi|122937418 similar to poly(A)binding protein nuclear-like 1 [H... 28 1.6
gi|4757962 cyclin-dependent kinase inhibitor 1B [Homo sapiens] 28 2.1
gi|4502553 calcium/calmodulin-dependent protein kinase I [Homo s... 27 2.7
gi|156139147 leucine rich repeat transmembrane neuronal 4 isofor... 27 2.7
gi|197927168 leucine rich repeat transmembrane neuronal 4 isofor... 27 2.7
gi|4503293 DEAH (Asp-Glu-Ala-His) box polypeptide 16 [Homo sapiens] 27 3.5
gi|11225266 transient receptor potential cation channel, subfami... 27 3.5
gi|170763533 RNA binding motif protein 35A isoform 5 [Homo sapiens] 27 4.6
gi|170763529 RNA binding motif protein 35A isoform 3 [Homo sapiens] 27 4.6
gi|170763527 RNA binding motif protein 35A isoform 4 [Homo sapiens] 27 4.6
gi|170763525 RNA binding motif protein 35A isoform 2 [Homo sapiens] 27 4.6
gi|56790297 RNA binding motif protein 35A isoform 1 [Homo sapiens] 27 4.6
gi|25777643 potassium intermediate/small conductance calcium-act... 26 6.0
gi|223671888 interleukin-1 receptor-associated kinase 4 isoform ... 26 7.8
gi|223671885 interleukin-1 receptor-associated kinase 4 isoform ... 26 7.8
gi|223671883 interleukin-1 receptor-associated kinase 4 isoform ... 26 7.8
gi|166795293 interleukin-1 receptor-associated kinase 4 isoform ... 26 7.8
gi|166795295 interleukin-1 receptor-associated kinase 4 isoform ... 26 7.8
gi|239745291 PREDICTED: hypothetical protein XP_002343418 isofor... 26 7.8
gi|239745289 PREDICTED: hypothetical protein XP_002343419 isofor... 26 7.8
gi|21265052 ADAM metallopeptidase with thrombospondin type 1 mot... 26 7.8
gi|110611167 ADAM metallopeptidase with thrombospondin type 1 mo... 26 7.8
gi|56550057 CCR4-NOT transcription complex, subunit 4 isoform a ... 26 7.8
>gi|210147443 hypothetical protein LOC552889 [Homo sapiens]
Length = 97
Score = 204 bits (520), Expect = 9e-54
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MEEISLANLDTNKLEAIAQEIYVDLIEDSCLGFCFEVHRAVKCGYFYLEFAETGSVKDFG 60
MEEISLANLDTNKLEAIAQEIYVDLIEDSCLGFCFEVHRAVKCGYFYLEFAETGSVKDFG
Sbjct: 1 MEEISLANLDTNKLEAIAQEIYVDLIEDSCLGFCFEVHRAVKCGYFYLEFAETGSVKDFG 60
Query: 61 IQPVEDKGACRLPLCSLPGEPGNGPDQQLQRSPPEFQ 97
IQPVEDKGACRLPLCSLPGEPGNGPDQQLQRSPPEFQ
Sbjct: 61 IQPVEDKGACRLPLCSLPGEPGNGPDQQLQRSPPEFQ 97
>gi|149588534 ataxin 7-like 3 isoform b [Homo sapiens]
Length = 347
Score = 98.6 bits (244), Expect = 9e-22
Identities = 45/61 (73%), Positives = 53/61 (86%)
Query: 1 MEEISLANLDTNKLEAIAQEIYVDLIEDSCLGFCFEVHRAVKCGYFYLEFAETGSVKDFG 60
MEE+SL+ LD +KLEAIAQEIY DL+EDSCLGFCFEVHRAVKCGYF+L+ + S+KDF
Sbjct: 3 MEEMSLSGLDNSKLEAIAQEIYADLVEDSCLGFCFEVHRAVKCGYFFLDDTDPDSMKDFE 62
Query: 61 I 61
I
Sbjct: 63 I 63
>gi|149588870 ataxin 7-like 3 isoform a [Homo sapiens]
Length = 354
Score = 98.6 bits (244), Expect = 9e-22
Identities = 45/61 (73%), Positives = 53/61 (86%)
Query: 1 MEEISLANLDTNKLEAIAQEIYVDLIEDSCLGFCFEVHRAVKCGYFYLEFAETGSVKDFG 60
MEE+SL+ LD +KLEAIAQEIY DL+EDSCLGFCFEVHRAVKCGYF+L+ + S+KDF
Sbjct: 3 MEEMSLSGLDNSKLEAIAQEIYADLVEDSCLGFCFEVHRAVKCGYFFLDDTDPDSMKDFE 62
Query: 61 I 61
I
Sbjct: 63 I 63
>gi|122937418 similar to poly(A)binding protein nuclear-like 1 [Homo
sapiens]
Length = 289
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 17/69 (24%)
Query: 6 LANLDTNKLEAIAQEIYVDLIE--------DSCLGFCFEVHRA-VKC--------GYFYL 48
L+ K+EA + +YV ++ ++ C EVHR + C GY Y+
Sbjct: 134 LSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYI 193
Query: 49 EFAETGSVK 57
EFA GSV+
Sbjct: 194 EFATKGSVQ 202
>gi|4757962 cyclin-dependent kinase inhibitor 1B [Homo sapiens]
Length = 198
Score = 27.7 bits (60), Expect = 2.1
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 33 FCFEVHRAVKCGYFYLEFAETGSVKDFGIQPVED-KGACRLPLCSLPGEPGNGPDQQLQR 91
F F+ H+ ++ Y + E E GS+ +F +P KGAC++P G+ P L
Sbjct: 62 FDFQNHKPLEGKYEWQE-VEKGSLPEFYYRPPRPPKGACKVPAQESQDVSGSRPAAPLIG 120
Query: 92 SP 93
+P
Sbjct: 121 AP 122
>gi|4502553 calcium/calmodulin-dependent protein kinase I [Homo
sapiens]
Length = 370
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 37 VHRAVKCG---YFYLEFAETGSVKDFGIQPVEDKGACRLPLCSLPG 79
VHR +K Y+ L+ + DFG+ +ED G+ C PG
Sbjct: 138 VHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPG 183
>gi|156139147 leucine rich repeat transmembrane neuronal 4 isoform b
[Homo sapiens]
Length = 518
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 8 NLDTNKLEAIAQE---IYVDLIEDSCLGFCFEVHRAVKCGYFY 47
NLD+NKL I+QE ++ LI + G +E R++ C FY
Sbjct: 283 NLDSNKLTNISQETVNAWISLISITLSGNMWECSRSI-CPLFY 324
>gi|197927168 leucine rich repeat transmembrane neuronal 4 isoform a
[Homo sapiens]
Length = 590
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 8 NLDTNKLEAIAQE---IYVDLIEDSCLGFCFEVHRAVKCGYFY 47
NLD+NKL I+QE ++ LI + G +E R++ C FY
Sbjct: 283 NLDSNKLTNISQETVNAWISLISITLSGNMWECSRSI-CPLFY 324
>gi|4503293 DEAH (Asp-Glu-Ala-His) box polypeptide 16 [Homo sapiens]
Length = 1041
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 13 KLEAIAQEIYVDLIEDSCLGFCFEVHRAVKCGYFY 47
+LE + + + V L SC G V +A+ GYFY
Sbjct: 917 QLEGLLERVEVGL--SSCQGDYIRVRKAITAGYFY 949
>gi|11225266 transient receptor potential cation channel, subfamily
M, member 5 [Homo sapiens]
Length = 1165
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 11/39 (28%)
Query: 57 KDFGIQPVEDKGACRLPLCSL-----------PGEPGNG 84
+DF + ED G + PLCSL PG PG G
Sbjct: 156 EDFPVHYPEDDGGSQGPLCSLDSNLSHFILVEPGPPGKG 194
>gi|170763533 RNA binding motif protein 35A isoform 5 [Homo sapiens]
Length = 604
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 47 YLEFAETGSVKDFGIQPVEDKGACRLPLCSLP 78
YL F ++ SV +G VED G L + S P
Sbjct: 164 YLNFEKSSSVSRYGASQVEDMGNIILAMISEP 195
>gi|170763529 RNA binding motif protein 35A isoform 3 [Homo sapiens]
Length = 659
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 47 YLEFAETGSVKDFGIQPVEDKGACRLPLCSLP 78
YL F ++ SV +G VED G L + S P
Sbjct: 164 YLNFEKSSSVSRYGASQVEDMGNIILAMISEP 195
>gi|170763527 RNA binding motif protein 35A isoform 4 [Homo sapiens]
Length = 608
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 47 YLEFAETGSVKDFGIQPVEDKGACRLPLCSLP 78
YL F ++ SV +G VED G L + S P
Sbjct: 164 YLNFEKSSSVSRYGASQVEDMGNIILAMISEP 195
>gi|170763525 RNA binding motif protein 35A isoform 2 [Homo sapiens]
Length = 677
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 47 YLEFAETGSVKDFGIQPVEDKGACRLPLCSLP 78
YL F ++ SV +G VED G L + S P
Sbjct: 164 YLNFEKSSSVSRYGASQVEDMGNIILAMISEP 195
>gi|56790297 RNA binding motif protein 35A isoform 1 [Homo sapiens]
Length = 681
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 47 YLEFAETGSVKDFGIQPVEDKGACRLPLCSLP 78
YL F ++ SV +G VED G L + S P
Sbjct: 164 YLNFEKSSSVSRYGASQVEDMGNIILAMISEP 195
>gi|25777643 potassium intermediate/small conductance
calcium-activated channel, subfamily N, member 1 [Homo
sapiens]
Length = 543
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/26 (50%), Positives = 13/26 (50%)
Query: 69 ACRLPLCSLPGEPGNGPDQQLQRSPP 94
A R P LP PG GP Q RS P
Sbjct: 506 AIRPPPPPLPPRPGPGPQDQAARSSP 531
>gi|223671888 interleukin-1 receptor-associated kinase 4 isoform b
[Homo sapiens]
Length = 336
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 37 VHRAVKCGYFYLEFAETGSVKDFGIQPVEDKGA 69
+HR +K L+ A T + DFG+ +K A
Sbjct: 184 IHRDIKSANILLDEAFTAKISDFGLARASEKFA 216
>gi|223671885 interleukin-1 receptor-associated kinase 4 isoform b
[Homo sapiens]
Length = 336
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 37 VHRAVKCGYFYLEFAETGSVKDFGIQPVEDKGA 69
+HR +K L+ A T + DFG+ +K A
Sbjct: 184 IHRDIKSANILLDEAFTAKISDFGLARASEKFA 216
>gi|223671883 interleukin-1 receptor-associated kinase 4 isoform b
[Homo sapiens]
Length = 336
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 37 VHRAVKCGYFYLEFAETGSVKDFGIQPVEDKGA 69
+HR +K L+ A T + DFG+ +K A
Sbjct: 184 IHRDIKSANILLDEAFTAKISDFGLARASEKFA 216
>gi|166795293 interleukin-1 receptor-associated kinase 4 isoform a
[Homo sapiens]
Length = 460
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 37 VHRAVKCGYFYLEFAETGSVKDFGIQPVEDKGA 69
+HR +K L+ A T + DFG+ +K A
Sbjct: 308 IHRDIKSANILLDEAFTAKISDFGLARASEKFA 340
>gi|166795295 interleukin-1 receptor-associated kinase 4 isoform a
[Homo sapiens]
Length = 460
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 37 VHRAVKCGYFYLEFAETGSVKDFGIQPVEDKGA 69
+HR +K L+ A T + DFG+ +K A
Sbjct: 308 IHRDIKSANILLDEAFTAKISDFGLARASEKFA 340
>gi|239745291 PREDICTED: hypothetical protein XP_002343418 isoform
1 [Homo sapiens]
Length = 185
Score = 25.8 bits (55), Expect = 7.8
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 48 LEFAETGSVKDFGIQPVEDKGACRLPLCSLPGEPGNGPDQQLQRSPP 94
L+ E GS QPVE +L L +LPGE G ++ P
Sbjct: 56 LKLGEPGSY-----QPVETAAKAQLSLMALPGEGDGGGHLDSEQEAP 97
>gi|239745289 PREDICTED: hypothetical protein XP_002343419 isoform
2 [Homo sapiens]
Length = 230
Score = 25.8 bits (55), Expect = 7.8
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 48 LEFAETGSVKDFGIQPVEDKGACRLPLCSLPGEPGNGPDQQLQRSPP 94
L+ E GS QPVE +L L +LPGE G ++ P
Sbjct: 56 LKLGEPGSY-----QPVETAAKAQLSLMALPGEGDGGGHLDSEQEAP 97
>gi|21265052 ADAM metallopeptidase with thrombospondin type 1 motif,
14 isoform 2 preproprotein [Homo sapiens]
Length = 1223
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/38 (36%), Positives = 15/38 (39%)
Query: 57 KDFGIQPVEDKGACRLPLCSLPGEPGNGPDQQLQRSPP 94
K G P D G LP S PG P GP + P
Sbjct: 1096 KASGPNPGPDPGPTSLPPFSTPGSPLPGPQDPADAAEP 1133
>gi|110611167 ADAM metallopeptidase with thrombospondin type 1 motif,
14 isoform 1 preproprotein [Homo sapiens]
Length = 1226
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/38 (36%), Positives = 15/38 (39%)
Query: 57 KDFGIQPVEDKGACRLPLCSLPGEPGNGPDQQLQRSPP 94
K G P D G LP S PG P GP + P
Sbjct: 1099 KASGPNPGPDPGPTSLPPFSTPGSPLPGPQDPADAAEP 1136
>gi|56550057 CCR4-NOT transcription complex, subunit 4 isoform a
[Homo sapiens]
Length = 639
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 58 DFGIQPVEDKGACRLPLCSLPGEPGNGPDQQLQRSPPEF 96
D + P + G +P+ +P GN D +PP +
Sbjct: 522 DLNLPPQHNTGLGGIPVAGIPASSGNSLDSLQDDNPPHW 560
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.140 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,466,116
Number of Sequences: 37866
Number of extensions: 190646
Number of successful extensions: 501
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 483
Number of HSP's gapped (non-prelim): 26
length of query: 97
length of database: 18,247,518
effective HSP length: 68
effective length of query: 29
effective length of database: 15,672,630
effective search space: 454506270
effective search space used: 454506270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.