Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 207444683

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|207444683 solute carrier family 1, member 4 isoform 2 [Homo
sapiens]
         (312 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|207444683 solute carrier family 1, member 4 isoform 2 [Homo s...   605   e-173
gi|21314632 solute carrier family 1, member 4 isoform 1 [Homo sa...   605   e-173
gi|223468566 solute carrier family 1 member 5 isoform 3 [Homo sa...   400   e-111
gi|223468564 solute carrier family 1 member 5 isoform 2 [Homo sa...   400   e-111
gi|5032093 solute carrier family 1 member 5 isoform 1 [Homo sapi...   400   e-111
gi|169790839 solute carrier family 1 (glial high affinity glutam...   307   9e-84
gi|4827012 solute carrier family 1 (high affinity aspartate/glut...   298   3e-81
gi|40254478 excitatory amino acid transporter 2 [Homo sapiens]        295   3e-80
gi|66773030 solute carrier family 1, member 1 [Homo sapiens]          290   1e-78
gi|194239697 solute carrier family 1 (glutamate transporter), me...   282   2e-76
gi|110349719 titin isoform N2-A [Homo sapiens]                         29   4.7  
gi|13376146 zinc finger and BTB domain containing 3 [Homo sapiens]     28   8.0  

>gi|207444683 solute carrier family 1, member 4 isoform 2 [Homo
           sapiens]
          Length = 312

 Score =  605 bits (1559), Expect = e-173
 Identities = 312/312 (100%), Positives = 312/312 (100%)

Query: 1   MNILGLVLFALVLGVALKKLGSEGEDLIRFFNSLNEATMVLVSWIMWYVPVGIMFLVGSK 60
           MNILGLVLFALVLGVALKKLGSEGEDLIRFFNSLNEATMVLVSWIMWYVPVGIMFLVGSK
Sbjct: 1   MNILGLVLFALVLGVALKKLGSEGEDLIRFFNSLNEATMVLVSWIMWYVPVGIMFLVGSK 60

Query: 61  IVEMKDIIVLVTSLGKYIFASILGHVIHGGIVLPLIYFVFTRKNPFRFLLGLLAPFATAF 120
           IVEMKDIIVLVTSLGKYIFASILGHVIHGGIVLPLIYFVFTRKNPFRFLLGLLAPFATAF
Sbjct: 61  IVEMKDIIVLVTSLGKYIFASILGHVIHGGIVLPLIYFVFTRKNPFRFLLGLLAPFATAF 120

Query: 121 ATCSSSATLPSMMKCIEENNGVDKRISRFILPIGATVNMDGAAIFQCVAAVFIAQLNNVE 180
           ATCSSSATLPSMMKCIEENNGVDKRISRFILPIGATVNMDGAAIFQCVAAVFIAQLNNVE
Sbjct: 121 ATCSSSATLPSMMKCIEENNGVDKRISRFILPIGATVNMDGAAIFQCVAAVFIAQLNNVE 180

Query: 181 LNAGQIFTILVTATASSVGAAGVPAGGVLTIAIILEAIGLPTHDLPLILAVDWIVDRTTT 240
           LNAGQIFTILVTATASSVGAAGVPAGGVLTIAIILEAIGLPTHDLPLILAVDWIVDRTTT
Sbjct: 181 LNAGQIFTILVTATASSVGAAGVPAGGVLTIAIILEAIGLPTHDLPLILAVDWIVDRTTT 240

Query: 241 VVNVEGDALGAGILHHLNQKATKKGEQELAEVKVEAIPNCKSEEETSPLVTHQNPAGPVA 300
           VVNVEGDALGAGILHHLNQKATKKGEQELAEVKVEAIPNCKSEEETSPLVTHQNPAGPVA
Sbjct: 241 VVNVEGDALGAGILHHLNQKATKKGEQELAEVKVEAIPNCKSEEETSPLVTHQNPAGPVA 300

Query: 301 SAPELESKESVL 312
           SAPELESKESVL
Sbjct: 301 SAPELESKESVL 312


>gi|21314632 solute carrier family 1, member 4 isoform 1 [Homo
           sapiens]
          Length = 532

 Score =  605 bits (1559), Expect = e-173
 Identities = 312/312 (100%), Positives = 312/312 (100%)

Query: 1   MNILGLVLFALVLGVALKKLGSEGEDLIRFFNSLNEATMVLVSWIMWYVPVGIMFLVGSK 60
           MNILGLVLFALVLGVALKKLGSEGEDLIRFFNSLNEATMVLVSWIMWYVPVGIMFLVGSK
Sbjct: 221 MNILGLVLFALVLGVALKKLGSEGEDLIRFFNSLNEATMVLVSWIMWYVPVGIMFLVGSK 280

Query: 61  IVEMKDIIVLVTSLGKYIFASILGHVIHGGIVLPLIYFVFTRKNPFRFLLGLLAPFATAF 120
           IVEMKDIIVLVTSLGKYIFASILGHVIHGGIVLPLIYFVFTRKNPFRFLLGLLAPFATAF
Sbjct: 281 IVEMKDIIVLVTSLGKYIFASILGHVIHGGIVLPLIYFVFTRKNPFRFLLGLLAPFATAF 340

Query: 121 ATCSSSATLPSMMKCIEENNGVDKRISRFILPIGATVNMDGAAIFQCVAAVFIAQLNNVE 180
           ATCSSSATLPSMMKCIEENNGVDKRISRFILPIGATVNMDGAAIFQCVAAVFIAQLNNVE
Sbjct: 341 ATCSSSATLPSMMKCIEENNGVDKRISRFILPIGATVNMDGAAIFQCVAAVFIAQLNNVE 400

Query: 181 LNAGQIFTILVTATASSVGAAGVPAGGVLTIAIILEAIGLPTHDLPLILAVDWIVDRTTT 240
           LNAGQIFTILVTATASSVGAAGVPAGGVLTIAIILEAIGLPTHDLPLILAVDWIVDRTTT
Sbjct: 401 LNAGQIFTILVTATASSVGAAGVPAGGVLTIAIILEAIGLPTHDLPLILAVDWIVDRTTT 460

Query: 241 VVNVEGDALGAGILHHLNQKATKKGEQELAEVKVEAIPNCKSEEETSPLVTHQNPAGPVA 300
           VVNVEGDALGAGILHHLNQKATKKGEQELAEVKVEAIPNCKSEEETSPLVTHQNPAGPVA
Sbjct: 461 VVNVEGDALGAGILHHLNQKATKKGEQELAEVKVEAIPNCKSEEETSPLVTHQNPAGPVA 520

Query: 301 SAPELESKESVL 312
           SAPELESKESVL
Sbjct: 521 SAPELESKESVL 532


>gi|223468566 solute carrier family 1 member 5 isoform 3 [Homo
           sapiens]
          Length = 339

 Score =  400 bits (1027), Expect = e-111
 Identities = 212/315 (67%), Positives = 248/315 (78%), Gaps = 5/315 (1%)

Query: 1   MNILGLVLFALVLGVALKKLGSEGEDLIRFFNSLNEATMVLVSWIMWYVPVGIMFLVGSK 60
           MNILGLV+FA+V GVAL+KLG EGE LIRFFNS NEATMVLVSWIMWY PVGIMFLV  K
Sbjct: 27  MNILGLVVFAIVFGVALRKLGPEGELLIRFFNSFNEATMVLVSWIMWYAPVGIMFLVAGK 86

Query: 61  IVEMKDIIVLVTSLGKYIFASILGHVIHGGIVLPLIYFVFTRKNPFRFLLGLLAPFATAF 120
           IVEM+D+ +L   LGKYI   +LGH IHG +VLPLIYF+FTRKNP+RFL G++ P ATAF
Sbjct: 87  IVEMEDVGLLFARLGKYILCCLLGHAIHGLLVLPLIYFLFTRKNPYRFLWGIVTPLATAF 146

Query: 121 ATCSSSATLPSMMKCIEENNGVDKRISRFILPIGATVNMDGAAIFQCVAAVFIAQLNNVE 180
            T SSSATLP MMKC+EENNGV K ISRFILPIGATVNMDGAA+FQCVAAVFIAQL+   
Sbjct: 147 GTSSSSATLPLMMKCVEENNGVAKHISRFILPIGATVNMDGAALFQCVAAVFIAQLSQQS 206

Query: 181 LNAGQIFTILVTATASSVGAAGVPAGGVLTIAIILEAIGLPTHDLPLILAVDWIVDRTTT 240
           L+  +I TILVTATASSVGAAG+PAGGVLT+AIILEA+ LP   + LILAVDW+VDR+ T
Sbjct: 207 LDFVKIITILVTATASSVGAAGIPAGGVLTLAIILEAVNLPVDHISLILAVDWLVDRSCT 266

Query: 241 VVNVEGDALGAGIL-HHLNQKATKKGEQELAEVKVE--AIPNCKSEEETSPLVTHQNPAG 297
           V+NVEGDALGAG+L +++++  ++  E EL +VK E    P     EE +PL+ H    G
Sbjct: 267 VLNVEGDALGAGLLQNYVDRTESRSTEPELIQVKSELPLDPLPVPTEEGNPLLKHYR--G 324

Query: 298 PVASAPELESKESVL 312
           P   A     KESV+
Sbjct: 325 PAGDATVASEKESVM 339


>gi|223468564 solute carrier family 1 member 5 isoform 2 [Homo
           sapiens]
          Length = 313

 Score =  400 bits (1027), Expect = e-111
 Identities = 212/315 (67%), Positives = 248/315 (78%), Gaps = 5/315 (1%)

Query: 1   MNILGLVLFALVLGVALKKLGSEGEDLIRFFNSLNEATMVLVSWIMWYVPVGIMFLVGSK 60
           MNILGLV+FA+V GVAL+KLG EGE LIRFFNS NEATMVLVSWIMWY PVGIMFLV  K
Sbjct: 1   MNILGLVVFAIVFGVALRKLGPEGELLIRFFNSFNEATMVLVSWIMWYAPVGIMFLVAGK 60

Query: 61  IVEMKDIIVLVTSLGKYIFASILGHVIHGGIVLPLIYFVFTRKNPFRFLLGLLAPFATAF 120
           IVEM+D+ +L   LGKYI   +LGH IHG +VLPLIYF+FTRKNP+RFL G++ P ATAF
Sbjct: 61  IVEMEDVGLLFARLGKYILCCLLGHAIHGLLVLPLIYFLFTRKNPYRFLWGIVTPLATAF 120

Query: 121 ATCSSSATLPSMMKCIEENNGVDKRISRFILPIGATVNMDGAAIFQCVAAVFIAQLNNVE 180
            T SSSATLP MMKC+EENNGV K ISRFILPIGATVNMDGAA+FQCVAAVFIAQL+   
Sbjct: 121 GTSSSSATLPLMMKCVEENNGVAKHISRFILPIGATVNMDGAALFQCVAAVFIAQLSQQS 180

Query: 181 LNAGQIFTILVTATASSVGAAGVPAGGVLTIAIILEAIGLPTHDLPLILAVDWIVDRTTT 240
           L+  +I TILVTATASSVGAAG+PAGGVLT+AIILEA+ LP   + LILAVDW+VDR+ T
Sbjct: 181 LDFVKIITILVTATASSVGAAGIPAGGVLTLAIILEAVNLPVDHISLILAVDWLVDRSCT 240

Query: 241 VVNVEGDALGAGIL-HHLNQKATKKGEQELAEVKVE--AIPNCKSEEETSPLVTHQNPAG 297
           V+NVEGDALGAG+L +++++  ++  E EL +VK E    P     EE +PL+ H    G
Sbjct: 241 VLNVEGDALGAGLLQNYVDRTESRSTEPELIQVKSELPLDPLPVPTEEGNPLLKHYR--G 298

Query: 298 PVASAPELESKESVL 312
           P   A     KESV+
Sbjct: 299 PAGDATVASEKESVM 313


>gi|5032093 solute carrier family 1 member 5 isoform 1 [Homo
           sapiens]
          Length = 541

 Score =  400 bits (1027), Expect = e-111
 Identities = 212/315 (67%), Positives = 248/315 (78%), Gaps = 5/315 (1%)

Query: 1   MNILGLVLFALVLGVALKKLGSEGEDLIRFFNSLNEATMVLVSWIMWYVPVGIMFLVGSK 60
           MNILGLV+FA+V GVAL+KLG EGE LIRFFNS NEATMVLVSWIMWY PVGIMFLV  K
Sbjct: 229 MNILGLVVFAIVFGVALRKLGPEGELLIRFFNSFNEATMVLVSWIMWYAPVGIMFLVAGK 288

Query: 61  IVEMKDIIVLVTSLGKYIFASILGHVIHGGIVLPLIYFVFTRKNPFRFLLGLLAPFATAF 120
           IVEM+D+ +L   LGKYI   +LGH IHG +VLPLIYF+FTRKNP+RFL G++ P ATAF
Sbjct: 289 IVEMEDVGLLFARLGKYILCCLLGHAIHGLLVLPLIYFLFTRKNPYRFLWGIVTPLATAF 348

Query: 121 ATCSSSATLPSMMKCIEENNGVDKRISRFILPIGATVNMDGAAIFQCVAAVFIAQLNNVE 180
            T SSSATLP MMKC+EENNGV K ISRFILPIGATVNMDGAA+FQCVAAVFIAQL+   
Sbjct: 349 GTSSSSATLPLMMKCVEENNGVAKHISRFILPIGATVNMDGAALFQCVAAVFIAQLSQQS 408

Query: 181 LNAGQIFTILVTATASSVGAAGVPAGGVLTIAIILEAIGLPTHDLPLILAVDWIVDRTTT 240
           L+  +I TILVTATASSVGAAG+PAGGVLT+AIILEA+ LP   + LILAVDW+VDR+ T
Sbjct: 409 LDFVKIITILVTATASSVGAAGIPAGGVLTLAIILEAVNLPVDHISLILAVDWLVDRSCT 468

Query: 241 VVNVEGDALGAGIL-HHLNQKATKKGEQELAEVKVE--AIPNCKSEEETSPLVTHQNPAG 297
           V+NVEGDALGAG+L +++++  ++  E EL +VK E    P     EE +PL+ H    G
Sbjct: 469 VLNVEGDALGAGLLQNYVDRTESRSTEPELIQVKSELPLDPLPVPTEEGNPLLKHYR--G 526

Query: 298 PVASAPELESKESVL 312
           P   A     KESV+
Sbjct: 527 PAGDATVASEKESVM 541


>gi|169790839 solute carrier family 1 (glial high affinity glutamate
           transporter), member 3 [Homo sapiens]
          Length = 542

 Score =  307 bits (786), Expect = 9e-84
 Identities = 149/275 (54%), Positives = 202/275 (73%)

Query: 1   MNILGLVLFALVLGVALKKLGSEGEDLIRFFNSLNEATMVLVSWIMWYVPVGIMFLVGSK 60
           +N LGLV+F++  G  +  +  +G+ L  FF+SLNEA M LV+ IMWY PVGI+FL+  K
Sbjct: 241 VNALGLVVFSMCFGFVIGNMKEQGQALREFFDSLNEAIMRLVAVIMWYAPVGILFLIAGK 300

Query: 61  IVEMKDIIVLVTSLGKYIFASILGHVIHGGIVLPLIYFVFTRKNPFRFLLGLLAPFATAF 120
           IVEM+D+ V+   L  Y    I+G +IH  IVLPL+YF+ TRKNP+ F+ GLL    TA 
Sbjct: 301 IVEMEDMGVIGGQLAMYTVTVIVGLLIHAVIVLPLLYFLVTRKNPWVFIGGLLQALITAL 360

Query: 121 ATCSSSATLPSMMKCIEENNGVDKRISRFILPIGATVNMDGAAIFQCVAAVFIAQLNNVE 180
            T SSSATLP   KC+EENNGVDKR++RF+LP+GAT+NMDG A+++ +AA+FIAQ+NN E
Sbjct: 361 GTSSSSATLPITFKCLEENNGVDKRVTRFVLPVGATINMDGTALYEALAAIFIAQVNNFE 420

Query: 181 LNAGQIFTILVTATASSVGAAGVPAGGVLTIAIILEAIGLPTHDLPLILAVDWIVDRTTT 240
           LN GQI TI +TATA+S+GAAG+P  G++T+ I+L ++GLPT D+ LI+AVDW +DR  T
Sbjct: 421 LNFGQIITISITATAASIGAAGIPQAGLVTMVIVLTSVGLPTDDITLIIAVDWFLDRLRT 480

Query: 241 VVNVEGDALGAGILHHLNQKATKKGEQELAEVKVE 275
             NV GD+LGAGI+ HL++   K  + E+    +E
Sbjct: 481 TTNVLGDSLGAGIVEHLSRHELKNRDVEMGNSVIE 515


>gi|4827012 solute carrier family 1 (high affinity
           aspartate/glutamate transporter), member 6 [Homo
           sapiens]
          Length = 564

 Score =  298 bits (764), Expect = 3e-81
 Identities = 145/269 (53%), Positives = 198/269 (73%)

Query: 1   MNILGLVLFALVLGVALKKLGSEGEDLIRFFNSLNEATMVLVSWIMWYVPVGIMFLVGSK 60
           +N LGLV+F++  G+ +  +  +G  L  FF+SLNEA M LV  I+WY PVGI+FL+  K
Sbjct: 266 INALGLVVFSVAFGLVIGGMKHKGRVLRDFFDSLNEAIMRLVGIIIWYAPVGILFLIAGK 325

Query: 61  IVEMKDIIVLVTSLGKYIFASILGHVIHGGIVLPLIYFVFTRKNPFRFLLGLLAPFATAF 120
           I+EM+D+ VL   LG Y    I+G  +H GIVLPLIYF+ T +NPF F+ G+L    TA 
Sbjct: 326 ILEMEDMAVLGGQLGMYTLTVIVGLFLHAGIVLPLIYFLVTHRNPFPFIGGMLQALITAM 385

Query: 121 ATCSSSATLPSMMKCIEENNGVDKRISRFILPIGATVNMDGAAIFQCVAAVFIAQLNNVE 180
            T SSSATLP   +C+EE  GVD+RI+RF+LP+GATVNMDG A+++ +AA+FIAQ+NN E
Sbjct: 386 GTSSSSATLPITFRCLEEGLGVDRRITRFVLPVGATVNMDGTALYEALAAIFIAQVNNYE 445

Query: 181 LNAGQIFTILVTATASSVGAAGVPAGGVLTIAIILEAIGLPTHDLPLILAVDWIVDRTTT 240
           LN GQI TI +TATA+SVGAAG+P  G++T+ I+L ++GLPT D+ LI+AVDW +DR  T
Sbjct: 446 LNLGQITTISITATAASVGAAGIPQAGLVTMVIVLTSVGLPTEDITLIIAVDWFLDRLRT 505

Query: 241 VVNVEGDALGAGILHHLNQKATKKGEQEL 269
           + NV GD++GA ++ HL+Q+  +  E EL
Sbjct: 506 MTNVLGDSIGAAVIEHLSQRELELQEAEL 534


>gi|40254478 excitatory amino acid transporter 2 [Homo sapiens]
          Length = 574

 Score =  295 bits (756), Expect = 3e-80
 Identities = 137/259 (52%), Positives = 193/259 (74%)

Query: 1   MNILGLVLFALVLGVALKKLGSEGEDLIRFFNSLNEATMVLVSWIMWYVPVGIMFLVGSK 60
           MN+LGL+ F +  G+A+ K+G + + ++ FFN LNE  M LV  IMWY P+GI  L+  K
Sbjct: 240 MNVLGLIGFFIAFGIAMGKMGDQAKLMVDFFNILNEIVMKLVIMIMWYSPLGIACLICGK 299

Query: 61  IVEMKDIIVLVTSLGKYIFASILGHVIHGGIVLPLIYFVFTRKNPFRFLLGLLAPFATAF 120
           I+ +KD+ V+   LG Y+   I+G +IHGGI LPLIYFV TRKNPF F  G+   + TA 
Sbjct: 300 IIAIKDLEVVARQLGMYMVTVIIGLIIHGGIFLPLIYFVVTRKNPFSFFAGIFQAWITAL 359

Query: 121 ATCSSSATLPSMMKCIEENNGVDKRISRFILPIGATVNMDGAAIFQCVAAVFIAQLNNVE 180
            T SS+ TLP   +C+EEN G+DKR++RF+LP+GAT+NMDG A+++ VAA+FIAQ+N V 
Sbjct: 360 GTASSAGTLPVTFRCLEENLGIDKRVTRFVLPVGATINMDGTALYEAVAAIFIAQMNGVV 419

Query: 181 LNAGQIFTILVTATASSVGAAGVPAGGVLTIAIILEAIGLPTHDLPLILAVDWIVDRTTT 240
           L+ GQI T+ +TAT +SVGAA +P+ G++T+ +IL A+GLPT D+ L++AVDW++DR  T
Sbjct: 420 LDGGQIVTVSLTATLASVGAASIPSAGLVTMLLILTAVGLPTEDISLLVAVDWLLDRMRT 479

Query: 241 VVNVEGDALGAGILHHLNQ 259
            VNV GD+ GAGI++HL++
Sbjct: 480 SVNVVGDSFGAGIVYHLSK 498


>gi|66773030 solute carrier family 1, member 1 [Homo sapiens]
          Length = 524

 Score =  290 bits (741), Expect = 1e-78
 Identities = 138/260 (53%), Positives = 195/260 (75%), Gaps = 1/260 (0%)

Query: 1   MNILGLVLFALVLGVALKKLGSEGEDLIRFFNSLNEATMVLVSWIMWYVPVGIMFLVGSK 60
           +N+LGL++F LV G+ + K+G +G+ L+ FFN+L++ATM +V  IM Y+P+GI+FL+  K
Sbjct: 210 INVLGLIVFCLVFGLVIGKMGEKGQILVDFFNALSDATMKIVQIIMCYMPLGILFLIAGK 269

Query: 61  IVEMKDIIVLVTSLGKYIFASILGHVIHGGIVLPLIYFVFTRKNPFRFLLGLLAPFATAF 120
           I+E++D  +    LG Y+   + G  IH  ++LPLIYF+  RKNPFRF +G+     TA 
Sbjct: 270 IIEVEDWEIF-RKLGLYMATVLTGLAIHSIVILPLIYFIVVRKNPFRFAMGMAQALLTAL 328

Query: 121 ATCSSSATLPSMMKCIEENNGVDKRISRFILPIGATVNMDGAAIFQCVAAVFIAQLNNVE 180
              SSSATLP   +C EENN VDKRI+RF+LP+GAT+NMDG A+++ VAAVFIAQLN+++
Sbjct: 329 MISSSSATLPVTFRCAEENNQVDKRITRFVLPVGATINMDGTALYEAVAAVFIAQLNDLD 388

Query: 181 LNAGQIFTILVTATASSVGAAGVPAGGVLTIAIILEAIGLPTHDLPLILAVDWIVDRTTT 240
           L  GQI TI +TAT++S+GAAGVP  G++T+ I+L A+GLP  D+ LI+AVDW++DR  T
Sbjct: 389 LGIGQIITISITATSASIGAAGVPQAGLVTMVIVLSAVGLPAEDVTLIIAVDWLLDRFRT 448

Query: 241 VVNVEGDALGAGILHHLNQK 260
           +VNV GDA G GI+  L++K
Sbjct: 449 MVNVLGDAFGTGIVEKLSKK 468


>gi|194239697 solute carrier family 1 (glutamate transporter),
           member 7 [Homo sapiens]
          Length = 560

 Score =  282 bits (722), Expect = 2e-76
 Identities = 136/279 (48%), Positives = 195/279 (69%), Gaps = 2/279 (0%)

Query: 1   MNILGLVLFALVLGVALKKLGSEGEDLIRFFNSLNEATMVLVSWIMWYVPVGIMFLVGSK 60
           MN+LG+V F+  +G+ L ++G  G  L+ F   LNE+ M +V+  +WY P GI+FL+  K
Sbjct: 220 MNVLGIVFFSATMGIMLGRMGDSGAPLVSFCQCLNESVMKIVAVAVWYFPFGIVFLIAGK 279

Query: 61  IVEMKDIIVLVTSLGKYIFASILGHVIHGGIVLPLIYFVFTRKNPFRFLLGLLAPFATAF 120
           I+EM D   +   LG Y    + G V+HG  +LPL+YF  T+KNP  F+ G+L     A 
Sbjct: 280 ILEMDDPRAVGKKLGFYSVTVVCGLVLHGLFILPLLYFFITKKNPIVFIRGILQALLIAL 339

Query: 121 ATCSSSATLPSMMKCIEENNGVDKRISRFILPIGATVNMDGAAIFQCVAAVFIAQLNNVE 180
           AT SSSATLP   KC+ ENN +D+RI+RF+LP+GAT+NMDG A+++ VAA+FIAQ+NN E
Sbjct: 340 ATSSSSATLPITFKCLLENNHIDRRIARFVLPVGATINMDGTALYEAVAAIFIAQVNNYE 399

Query: 181 LNAGQIFTILVTATASSVGAAGVPAGGVLTIAIILEAIGLPTHDLPLILAVDWIVDRTTT 240
           L+ GQI TI +TATA+S+GAAG+P  G++T+ I+L ++GLPT D+ LI+AVDW +DR  T
Sbjct: 400 LDFGQIITISITATAASIGAAGIPQAGLVTMVIVLTSVGLPTDDITLIIAVDWALDRFRT 459

Query: 241 VVNVEGDALGAGILHHLNQK--ATKKGEQELAEVKVEAI 277
           ++NV GDAL AGI+ H+ +K  A   G ++L   + + +
Sbjct: 460 MINVLGDALAAGIMAHICRKDFARDTGTEKLLPCETKPV 498


>gi|110349719 titin isoform N2-A [Homo sapiens]
          Length = 33423

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 268   ELAEVKVEAIPNCKSEEETSPLVTHQNPAGPVASAPEL 305
             EL  VKV  +P     E+  PLV  + P  P A  PE+
Sbjct: 10715 ELPPVKVPEVPKEVVPEKKVPLVVPKKPEAPPAKVPEV 10752


>gi|13376146 zinc finger and BTB domain containing 3 [Homo sapiens]
          Length = 574

 Score = 28.5 bits (62), Expect = 8.0
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 260 KATKKGEQELAEVKVEAIPNCKSEEETSPLVTHQNPAGPVASAP 303
           +A    E EL +VKVEAI    S+EET   V+ + P GP  + P
Sbjct: 342 QAPAPAEAELVQVKVEAI--VISDEETD--VSDEQPQGPERAFP 381


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,528,008
Number of Sequences: 37866
Number of extensions: 422925
Number of successful extensions: 1166
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1149
Number of HSP's gapped (non-prelim): 17
length of query: 312
length of database: 18,247,518
effective HSP length: 102
effective length of query: 210
effective length of database: 14,385,186
effective search space: 3020889060
effective search space used: 3020889060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press