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Search of human proteins with 205277364
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|205277364 hypothetical protein LOC201158 isoform 2 [Homo
sapiens]
(203 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|205277364 hypothetical protein LOC201158 isoform 2 [Homo sapi... 414 e-116
gi|148747574 hypothetical protein LOC51030 [Homo sapiens] 390 e-109
gi|205277366 hypothetical protein LOC201158 isoform 1 [Homo sapi... 317 4e-87
gi|118421083 hypothetical protein LOC780776 [Homo sapiens] 231 2e-61
gi|239747502 PREDICTED: hypothetical protein XP_002347667 [Homo ... 30 1.8
gi|239741380 PREDICTED: hypothetical protein XP_002342189 [Homo ... 30 1.8
gi|222831612 solute carrier family 44, member 2 isoform 1 [Homo ... 28 5.3
gi|222831610 solute carrier family 44, member 2 isoform 2 [Homo ... 28 5.3
gi|10092687 NIPA-like domain containing 3 [Homo sapiens] 28 5.3
gi|7656959 calpain 7 [Homo sapiens] 28 5.3
gi|93141214 sodium channel, voltage-gated, type II, alpha isofor... 28 7.0
gi|93141212 sodium channel, voltage-gated, type II, alpha isofor... 28 7.0
gi|93141210 sodium channel, voltage-gated, type II, alpha isofor... 28 7.0
gi|126362955 sodium channel, voltage-gated, type III, alpha isof... 28 7.0
gi|126362947 sodium channel, voltage-gated, type III, alpha isof... 28 7.0
gi|126362949 sodium channel, voltage-gated, type III, alpha isof... 28 7.0
gi|46047429 olfactory receptor, family 2, subfamily V, member 2 ... 27 9.1
>gi|205277364 hypothetical protein LOC201158 isoform 2 [Homo
sapiens]
Length = 203
Score = 414 bits (1064), Expect = e-116
Identities = 203/203 (100%), Positives = 203/203 (100%)
Query: 1 MLQQDSNDDTEDVSLFDAEEETTNRPRKAKIRHPVASFFHLFFRVSAIIVCLLCELLSSS 60
MLQQDSNDDTEDVSLFDAEEETTNRPRKAKIRHPVASFFHLFFRVSAIIVCLLCELLSSS
Sbjct: 1 MLQQDSNDDTEDVSLFDAEEETTNRPRKAKIRHPVASFFHLFFRVSAIIVCLLCELLSSS 60
Query: 61 FITCMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVS 120
FITCMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVS
Sbjct: 61 FITCMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVS 120
Query: 121 EAESRIFWLGLIACSVLWVIFAFSALFSFTVKWLAVVIMGVVLQGANLYGYIRCKVRSRK 180
EAESRIFWLGLIACSVLWVIFAFSALFSFTVKWLAVVIMGVVLQGANLYGYIRCKVRSRK
Sbjct: 121 EAESRIFWLGLIACSVLWVIFAFSALFSFTVKWLAVVIMGVVLQGANLYGYIRCKVRSRK 180
Query: 181 HLTSMATSYFGKQFLRQVSVFWM 203
HLTSMATSYFGKQFLRQVSVFWM
Sbjct: 181 HLTSMATSYFGKQFLRQVSVFWM 203
>gi|148747574 hypothetical protein LOC51030 [Homo sapiens]
Length = 205
Score = 390 bits (1001), Expect = e-109
Identities = 193/197 (97%), Positives = 193/197 (97%)
Query: 1 MLQQDSNDDTEDVSLFDAEEETTNRPRKAKIRHPVASFFHLFFRVSAIIVCLLCELLSSS 60
MLQQDSNDDTEDVSLFDAEEETTNRPRKAKIRHPVASFFHLFFRVSAIIV LLC LLSSS
Sbjct: 1 MLQQDSNDDTEDVSLFDAEEETTNRPRKAKIRHPVASFFHLFFRVSAIIVYLLCGLLSSS 60
Query: 61 FITCMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVS 120
FITCMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVS
Sbjct: 61 FITCMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVS 120
Query: 121 EAESRIFWLGLIACSVLWVIFAFSALFSFTVKWLAVVIMGVVLQGANLYGYIRCKVRSRK 180
EAESRIFWLGLIAC VLWVIFAFSALFSF VKWLAVVIMGVVLQGANLYGYIRCKVRSRK
Sbjct: 121 EAESRIFWLGLIACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVRSRK 180
Query: 181 HLTSMATSYFGKQFLRQ 197
HLTSMATSYFGKQFLRQ
Sbjct: 181 HLTSMATSYFGKQFLRQ 197
>gi|205277366 hypothetical protein LOC201158 isoform 1 [Homo
sapiens]
Length = 276
Score = 317 bits (812), Expect = 4e-87
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MLQQDSNDDTEDVSLFDAEEETTNRPRKAKIRHPVASFFHLFFRVSAIIVCLLCELLSSS 60
MLQQDSNDDTEDVSLFDAEEETTNRPRKAKIRHPVASFFHLFFRVSAIIVCLLCELLSSS
Sbjct: 1 MLQQDSNDDTEDVSLFDAEEETTNRPRKAKIRHPVASFFHLFFRVSAIIVCLLCELLSSS 60
Query: 61 FITCMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVS 120
FITCMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVS
Sbjct: 61 FITCMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVS 120
Query: 121 EAESRIFWLGLIACSVLWVIFAFSALFSFTVKWL 154
EAESRIFWLGLIACSVLWVIFAFSALFSFTVKWL
Sbjct: 121 EAESRIFWLGLIACSVLWVIFAFSALFSFTVKWL 154
>gi|118421083 hypothetical protein LOC780776 [Homo sapiens]
Length = 213
Score = 231 bits (590), Expect = 2e-61
Identities = 112/192 (58%), Positives = 142/192 (73%), Gaps = 4/192 (2%)
Query: 2 LQQDSNDDTEDVSL-FDAEEETTNRPRKAKIRHPVASFFHLFFRVSAIIVCLLCELLSSS 60
++Q DDTEDVSL F EEE R KAKIRHP+A+FFHLFFRVSAI+ + C+ S S
Sbjct: 1 MKQALVDDTEDVSLDFGNEEELAFR--KAKIRHPLATFFHLFFRVSAIVTYVSCDWFSKS 58
Query: 61 FITCMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVS 120
F+ C V ++LLLS DFW+VKNVTGRL+VGLRWWN IDEDGKSHW+FE+RK S + +
Sbjct: 59 FVGCFVMVLLLLSLDFWSVKNVTGRLLVGLRWWNQIDEDGKSHWIFEARK-VSPNSIAAT 117
Query: 121 EAESRIFWLGLIACSVLWVIFAFSALFSFTVKWLAVVIMGVVLQGANLYGYIRCKVRSRK 180
EAE+RIFWLGLI C ++W++F FS LFS +KWLA+V+ G+ LQ ANLYGYI CK+
Sbjct: 118 EAEARIFWLGLIICPMIWIVFFFSTLFSLKLKWLALVVAGISLQAANLYGYILCKMGGNS 177
Query: 181 HLTSMATSYFGK 192
+ + S+ +
Sbjct: 178 DIGKVTASFLSQ 189
>gi|239747502 PREDICTED: hypothetical protein XP_002347667 [Homo
sapiens]
Length = 305
Score = 29.6 bits (65), Expect = 1.8
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 82 VTGRLMVGLRWWNHIDEDGKS-HWVFESRKESSQENKTVSEAESRIFWL 129
+ G L VG R +DE G+S W+ + K ++K + E FWL
Sbjct: 57 LVGDLKVGCRNQLRLDEPGQSLTWILKQEKAHQHQHKRKAGPEGFAFWL 105
>gi|239741380 PREDICTED: hypothetical protein XP_002342189 [Homo
sapiens]
Length = 305
Score = 29.6 bits (65), Expect = 1.8
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 82 VTGRLMVGLRWWNHIDEDGKS-HWVFESRKESSQENKTVSEAESRIFWL 129
+ G L VG R +DE G+S W+ + K ++K + E FWL
Sbjct: 57 LVGDLKVGCRNQLRLDEPGQSLTWILKQEKAHQHQHKRKAGPEGFAFWL 105
>gi|222831612 solute carrier family 44, member 2 isoform 1 [Homo
sapiens]
Length = 706
Score = 28.1 bits (61), Expect = 5.3
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 74 CDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIA 133
C + + + G + VG+ W H D K + +SR E + T +E + +F+ ++
Sbjct: 36 CCVFLLLAIVGYVAVGIIAWTHGDPR-KVIYPTDSRGEFCGQKGTKNENKPYLFYFNIVK 94
Query: 134 CSVLWVIFAF 143
C+ V+ F
Sbjct: 95 CASPLVLLEF 104
>gi|222831610 solute carrier family 44, member 2 isoform 2 [Homo
sapiens]
Length = 704
Score = 28.1 bits (61), Expect = 5.3
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 74 CDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIA 133
C + + + G + VG+ W H D K + +SR E + T +E + +F+ ++
Sbjct: 34 CCVFLLLAIVGYVAVGIIAWTHGDPR-KVIYPTDSRGEFCGQKGTKNENKPYLFYFNIVK 92
Query: 134 CSVLWVIFAF 143
C+ V+ F
Sbjct: 93 CASPLVLLEF 102
>gi|10092687 NIPA-like domain containing 3 [Homo sapiens]
Length = 406
Score = 28.1 bits (61), Expect = 5.3
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 32 RHPVASFFHLFFRVSAIIVCLLC----ELLSSSFITCMVTIILLLSCDFWAVKNVTGRLM 87
RH V+ F L+ V I+ CLL E +++ + ++ + LL S VK V G L+
Sbjct: 169 RHLVSWPFLLYMLVEIILFCLLLYFYKEKNANNIVVILLLVALLGSMTVVTVKAVAGMLV 228
Query: 88 VGLR 91
+ ++
Sbjct: 229 LSIQ 232
>gi|7656959 calpain 7 [Homo sapiens]
Length = 813
Score = 28.1 bits (61), Expect = 5.3
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 90 LRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWL 129
LRW E+ +W E +K + + +T + ++ IFW+
Sbjct: 483 LRWKGRYSENDVKNWTPELQKYLNFDPRTAQKIDNGIFWI 522
>gi|93141214 sodium channel, voltage-gated, type II, alpha isoform 2
[Homo sapiens]
Length = 2005
Score = 27.7 bits (60), Expect = 7.0
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 111 ESSQENKTVSEAESRIF-WLGLIACSVLWVIFAFSALFSFTVKWLAVVIMGVVLQG--AN 167
E + KT+ E ++F ++ ++ + WV + F F+ WL +I+ V L AN
Sbjct: 1233 EQRKTIKTMLEYADKVFTYIFILEMLLKWVAYGFQVYFTNAWCWLDFLIVDVSLVSLTAN 1292
Query: 168 LYGY 171
GY
Sbjct: 1293 ALGY 1296
>gi|93141212 sodium channel, voltage-gated, type II, alpha isoform 1
[Homo sapiens]
Length = 2005
Score = 27.7 bits (60), Expect = 7.0
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 111 ESSQENKTVSEAESRIF-WLGLIACSVLWVIFAFSALFSFTVKWLAVVIMGVVLQG--AN 167
E + KT+ E ++F ++ ++ + WV + F F+ WL +I+ V L AN
Sbjct: 1233 EQRKTIKTMLEYADKVFTYIFILEMLLKWVAYGFQVYFTNAWCWLDFLIVDVSLVSLTAN 1292
Query: 168 LYGY 171
GY
Sbjct: 1293 ALGY 1296
>gi|93141210 sodium channel, voltage-gated, type II, alpha isoform 1
[Homo sapiens]
Length = 2005
Score = 27.7 bits (60), Expect = 7.0
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 111 ESSQENKTVSEAESRIF-WLGLIACSVLWVIFAFSALFSFTVKWLAVVIMGVVLQG--AN 167
E + KT+ E ++F ++ ++ + WV + F F+ WL +I+ V L AN
Sbjct: 1233 EQRKTIKTMLEYADKVFTYIFILEMLLKWVAYGFQVYFTNAWCWLDFLIVDVSLVSLTAN 1292
Query: 168 LYGY 171
GY
Sbjct: 1293 ALGY 1296
>gi|126362955 sodium channel, voltage-gated, type III, alpha isoform 3
[Homo sapiens]
Length = 1951
Score = 27.7 bits (60), Expect = 7.0
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 111 ESSQENKTVSEAESRIF-WLGLIACSVLWVIFAFSALFSFTVKWLAVVIMGVVLQG--AN 167
E + KT+ E ++F ++ ++ + WV + F F+ WL +I+ V L AN
Sbjct: 1182 EQRKTIKTMLEYADKVFTYIFILEMLLKWVAYGFQTYFTNAWCWLDFLIVDVSLVSLVAN 1241
Query: 168 LYGY 171
GY
Sbjct: 1242 ALGY 1245
>gi|126362947 sodium channel, voltage-gated, type III, alpha isoform 2
[Homo sapiens]
Length = 1951
Score = 27.7 bits (60), Expect = 7.0
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 111 ESSQENKTVSEAESRIF-WLGLIACSVLWVIFAFSALFSFTVKWLAVVIMGVVLQG--AN 167
E + KT+ E ++F ++ ++ + WV + F F+ WL +I+ V L AN
Sbjct: 1182 EQRKTIKTMLEYADKVFTYIFILEMLLKWVAYGFQTYFTNAWCWLDFLIVDVSLVSLVAN 1241
Query: 168 LYGY 171
GY
Sbjct: 1242 ALGY 1245
>gi|126362949 sodium channel, voltage-gated, type III, alpha isoform 1
[Homo sapiens]
Length = 2000
Score = 27.7 bits (60), Expect = 7.0
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 111 ESSQENKTVSEAESRIF-WLGLIACSVLWVIFAFSALFSFTVKWLAVVIMGVVLQG--AN 167
E + KT+ E ++F ++ ++ + WV + F F+ WL +I+ V L AN
Sbjct: 1231 EQRKTIKTMLEYADKVFTYIFILEMLLKWVAYGFQTYFTNAWCWLDFLIVDVSLVSLVAN 1290
Query: 168 LYGY 171
GY
Sbjct: 1291 ALGY 1294
>gi|46047429 olfactory receptor, family 2, subfamily V, member 2
[Homo sapiens]
Length = 315
Score = 27.3 bits (59), Expect = 9.1
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 123 ESRIFWLGLIACSVLWVIFAFSALFSFTVKWLAVVIMGVVLQGANLYGYIRCKVRSRKHL 182
++ +F + AC V ++F FS + + I+G VLQ + + + HL
Sbjct: 192 DTSLFEKVIFACCVFMLLFPFSIIVASYAH-----ILGTVLQMHSAQAWKKALATCSSHL 246
Query: 183 TSMATSYFGKQFL 195
T++ Y F+
Sbjct: 247 TAVTLFYGAAMFI 259
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.136 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,919,773
Number of Sequences: 37866
Number of extensions: 259043
Number of successful extensions: 959
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 948
Number of HSP's gapped (non-prelim): 23
length of query: 203
length of database: 18,247,518
effective HSP length: 97
effective length of query: 106
effective length of database: 14,574,516
effective search space: 1544898696
effective search space used: 1544898696
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.