Guide to the Human Genome
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Name: GFI1B Sequence: fasta or formatted (330aa) NCBI GI: 205277343
Description:

growth factor independent 1B transcription repressor isoform 1

Referenced in:

Hematopoiesis and Erythrocytes
Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [284aa] growth factor independent 1B transcription repressor isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         15           1
 C cysteine            3.9         13           1
 D aspartate           4.2         14           1
 E glutamate           4.5         15           1
 F phenylalanine       5.2         17           1
 G glycine             4.5         15           1
 H histidine           6.7         22           1
 I isoleucine          1.5          5           1
 K lysine              6.7         22           2
 L leucine             7.9         26           2
 M methionine          1.8          6           1
 N asparagine          2.1          7           1
 P proline             9.1         30           2
 Q glutamine           5.2         17           1
 R arginine            6.4         21           2
 S serine             11.2         37           2
 T threonine           6.4         21           2
 V valine              4.5         15           1
 W tryptophan          0.9          3           1
 Y tyrosine            2.7          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   growth factor independent 1B transcription represso... 
GFI1B                 0.641   growth factor independent 1B transcription represso...
GFI1                  0.460   growth factor independent 1 
GFI1                  0.460   growth factor independent 1 
GFI1                  0.460   growth factor independent 1 
FEZF1                 0.222   FEZ family zinc finger 1 isoform 2 
FEZF1                 0.222   FEZ family zinc finger 1 isoform 1 
ZNF91                 0.222   zinc finger protein 91 
ZNF836                0.222   zinc finger protein 836 
FEZF2                 0.222   FEZ family zinc finger 2 
ZNF324B               0.219   zinc finger protein 324B 
ZNF782                0.218   zinc finger protein 782 
ZNF85                 0.218   zinc finger protein 85 
ZNF714                0.218   zinc finger protein 714 
ZNF493                0.216   zinc finger protein 493 isoform 1 
ZNF493                0.216   zinc finger protein 493 isoform 3 
ZNF98                 0.216   zinc finger protein 98 
ZNF93                 0.216   zinc finger protein 93 
ZNF324                0.216   zinc finger protein 324 
LOC646864             0.216   PREDICTED: similar to hCG36734 
ZNF66                 0.216   PREDICTED: zinc finger protein 66 
LOC646864             0.216   PREDICTED: similar to hCG36734 
ZNF66                 0.216   PREDICTED: zinc finger protein 66 
LOC646864             0.216   PREDICTED: similar to hCG36734 
ZNF66                 0.216   PREDICTED: zinc finger protein 66 
ZNF568                0.216   zinc finger protein 568 
ZNF596                0.216   zinc finger protein 596 
ZNF596                0.216   zinc finger protein 596 
ZNF596                0.216   zinc finger protein 596 
ZNF471                0.215   zinc finger protein 471 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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