Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 20336746
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|20336746 H2A histone family, member Y isoform 1 [Homo
sapiens]
(369 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|20336746 H2A histone family, member Y isoform 1 [Homo sapiens] 718 0.0
gi|93141018 H2A histone family, member Y isoform 3 [Homo sapiens] 676 0.0
gi|4758496 H2A histone family, member Y isoform 2 [Homo sapiens] 669 0.0
gi|93141020 H2A histone family, member Y isoform 2 [Homo sapiens] 669 0.0
gi|8923920 H2A histone family, member Y2 [Homo sapiens] 482 e-136
gi|4504253 H2A histone family, member X [Homo sapiens] 159 5e-39
gi|28195394 histone cluster 2, H2ab [Homo sapiens] 154 1e-37
gi|25092737 histone cluster 1, H2aa [Homo sapiens] 153 2e-37
gi|106775678 histone cluster 2, H2aa4 [Homo sapiens] 152 4e-37
gi|4504251 histone cluster 2, H2aa3 [Homo sapiens] 152 4e-37
gi|24638446 histone cluster 2, H2ac [Homo sapiens] 152 6e-37
gi|15617199 histone cluster 3, H2a [Homo sapiens] 152 6e-37
gi|4504245 histone cluster 1, H2ac [Homo sapiens] 151 8e-37
gi|29553970 H2A histone family, member J [Homo sapiens] 150 1e-36
gi|19557656 histone cluster 1, H2ab [Homo sapiens] 150 1e-36
gi|10645195 histone cluster 1, H2ae [Homo sapiens] 150 1e-36
gi|10800130 histone cluster 1, H2ad [Homo sapiens] 150 1e-36
gi|10800132 histone cluster 1, H2ag [Homo sapiens] 150 2e-36
gi|4504239 histone cluster 1, H2ai [Homo sapiens] 150 2e-36
gi|18105045 histone cluster 1, H2ah [Homo sapiens] 150 2e-36
gi|4504241 histone cluster 1, H2ak [Homo sapiens] 150 2e-36
gi|4504249 histone cluster 1, H2am [Homo sapiens] 150 2e-36
gi|4504243 histone cluster 1, H2al [Homo sapiens] 150 2e-36
gi|10800144 histone cluster 1, H2aj [Homo sapiens] 150 2e-36
gi|4504255 H2A histone family, member Z [Homo sapiens] 121 9e-28
gi|6912616 H2A histone family, member V isoform 1 [Homo sapiens] 121 1e-27
gi|41406067 H2A histone family, member V isoform 3 [Homo sapiens] 107 1e-23
gi|20357599 H2A histone family, member V isoform 2 [Homo sapiens] 102 4e-22
gi|154813199 poly (ADP-ribose) polymerase family, member 14 [Hom... 79 5e-15
gi|165377137 poly (ADP-ribose) polymerase family, member 15 isof... 79 8e-15
>gi|20336746 H2A histone family, member Y isoform 1 [Homo sapiens]
Length = 369
Score = 718 bits (1853), Expect = 0.0
Identities = 369/369 (100%), Positives = 369/369 (100%)
Query: 1 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI 60
MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
Sbjct: 1 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI 60
Query: 61 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 120
LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
Sbjct: 61 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 120
Query: 121 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA 180
KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA
Sbjct: 121 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA 180
Query: 181 DGFTVLSTKSLFLGQKLQVVQADIASIDSDAVVHPTNTDFYIGGEVGNTLEKKGGKEFVE 240
DGFTVLSTKSLFLGQKLQVVQADIASIDSDAVVHPTNTDFYIGGEVGNTLEKKGGKEFVE
Sbjct: 181 DGFTVLSTKSLFLGQKLQVVQADIASIDSDAVVHPTNTDFYIGGEVGNTLEKKGGKEFVE 240
Query: 241 AVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADD 300
AVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADD
Sbjct: 241 AVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADD 300
Query: 301 KKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYV 360
KKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYV
Sbjct: 301 KKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYV 360
Query: 361 QEMAKLDAN 369
QEMAKLDAN
Sbjct: 361 QEMAKLDAN 369
>gi|93141018 H2A histone family, member Y isoform 3 [Homo sapiens]
Length = 372
Score = 676 bits (1743), Expect = 0.0
Identities = 347/372 (93%), Positives = 359/372 (96%), Gaps = 3/372 (0%)
Query: 1 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI 60
MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
Sbjct: 1 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI 60
Query: 61 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 120
LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
Sbjct: 61 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 120
Query: 121 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA 180
KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA
Sbjct: 121 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA 180
Query: 181 DGFTVLSTKSLFLGQKLQVVQADI---ASIDSDAVVHPTNTDFYIGGEVGNTLEKKGGKE 237
DGFTVLSTKSLFLGQKL ++ ++I A + +A+++PTN D + ++GNTLEKKGGKE
Sbjct: 181 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE 240
Query: 238 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL 297
FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL
Sbjct: 241 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL 300
Query: 298 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG 357
ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
Sbjct: 301 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG 360
Query: 358 IYVQEMAKLDAN 369
IYVQEMAKLDAN
Sbjct: 361 IYVQEMAKLDAN 372
>gi|4758496 H2A histone family, member Y isoform 2 [Homo sapiens]
Length = 371
Score = 669 bits (1726), Expect = 0.0
Identities = 346/372 (93%), Positives = 358/372 (96%), Gaps = 4/372 (1%)
Query: 1 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI 60
MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
Sbjct: 1 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI 60
Query: 61 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 120
LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
Sbjct: 61 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 120
Query: 121 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA 180
KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKS KKQGEVSKAASADSTTEGTPA
Sbjct: 121 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKS-KKQGEVSKAASADSTTEGTPA 179
Query: 181 DGFTVLSTKSLFLGQKLQVVQADI---ASIDSDAVVHPTNTDFYIGGEVGNTLEKKGGKE 237
DGFTVLSTKSLFLGQKL ++ ++I A + +A+++PTN D + ++GNTLEKKGGKE
Sbjct: 180 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE 239
Query: 238 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL 297
FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL
Sbjct: 240 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL 299
Query: 298 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG 357
ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
Sbjct: 300 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG 359
Query: 358 IYVQEMAKLDAN 369
IYVQEMAKLDAN
Sbjct: 360 IYVQEMAKLDAN 371
>gi|93141020 H2A histone family, member Y isoform 2 [Homo sapiens]
Length = 371
Score = 669 bits (1726), Expect = 0.0
Identities = 346/372 (93%), Positives = 358/372 (96%), Gaps = 4/372 (1%)
Query: 1 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI 60
MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
Sbjct: 1 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI 60
Query: 61 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 120
LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
Sbjct: 61 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 120
Query: 121 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA 180
KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKS KKQGEVSKAASADSTTEGTPA
Sbjct: 121 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKS-KKQGEVSKAASADSTTEGTPA 179
Query: 181 DGFTVLSTKSLFLGQKLQVVQADI---ASIDSDAVVHPTNTDFYIGGEVGNTLEKKGGKE 237
DGFTVLSTKSLFLGQKL ++ ++I A + +A+++PTN D + ++GNTLEKKGGKE
Sbjct: 180 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE 239
Query: 238 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL 297
FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL
Sbjct: 240 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL 299
Query: 298 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG 357
ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
Sbjct: 300 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG 359
Query: 358 IYVQEMAKLDAN 369
IYVQEMAKLDAN
Sbjct: 360 IYVQEMAKLDAN 371
>gi|8923920 H2A histone family, member Y2 [Homo sapiens]
Length = 372
Score = 482 bits (1240), Expect = e-136
Identities = 246/371 (66%), Positives = 291/371 (78%), Gaps = 3/371 (0%)
Query: 1 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI 60
MS R GKKK +K SRSA+AGVIFPVGR++RY+KKG KYRI VGAPVYMAAV+EYL AEI
Sbjct: 1 MSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEI 60
Query: 61 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 120
LELAGNAARDNKK R+ PRHILLAVANDEELNQLLKGVTIASGGVLP IHPELLAKKRG+
Sbjct: 61 LELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGT 120
Query: 121 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA 180
KGK E I++PPP K+ + + K KK+ K K K + K +++ST+E P
Sbjct: 121 KGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPG 180
Query: 181 DGFTVLSTKSLFLGQKLQVVQADIASIDS---DAVVHPTNTDFYIGGEVGNTLEKKGGKE 237
DGFT+LS+KSL LGQKL + Q+DI+ I S + +VHPT + + ++G LEK GGKE
Sbjct: 181 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKE 240
Query: 238 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL 297
F+E V ELRK GPLEVA AAVS GL AKFVIHC+ P WG+DKCEE LE+T+KNCL+
Sbjct: 241 FLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSA 300
Query: 298 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG 357
A+DKKLKS+AFP SGRN FPKQTAAQ+ LKAIS++F + +SS+K VYF+LFDSESIG
Sbjct: 301 AEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIG 360
Query: 358 IYVQEMAKLDA 368
IYVQEMAKLDA
Sbjct: 361 IYVQEMAKLDA 371
>gi|4504253 H2A histone family, member X [Homo sapiens]
Length = 143
Score = 159 bits (401), Expect = 5e-39
Identities = 85/138 (61%), Positives = 102/138 (73%), Gaps = 3/138 (2%)
Query: 5 GGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELA 64
GGK ++ SRS++AG+ FPVGR+ R ++KGH R+G GAPVY+AAVLEYLTAEILELA
Sbjct: 8 GGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELA 67
Query: 65 GNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKL 124
GNAARDNKK R+ PRH+ LA+ NDEELN+LL GVTIA GGVLPNI LL KK +
Sbjct: 68 GNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTSATVGP 127
Query: 125 EAIITPPPAKKAKSPSQK 142
+A P KKA SQ+
Sbjct: 128 KA---PSGGKKATQASQE 142
>gi|28195394 histone cluster 2, H2ab [Homo sapiens]
Length = 130
Score = 154 bits (389), Expect = 1e-37
Identities = 79/117 (67%), Positives = 94/117 (80%)
Query: 4 RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
+GGK ++ SRS++AG+ FPVGR+ R ++KG+ R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7 QGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILEL 66
Query: 64 AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 120
AGNAARDNKK R+ PRH+ LAV NDEELN+LL GVTIA GGVLPNI LL KK S
Sbjct: 67 AGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTES 123
>gi|25092737 histone cluster 1, H2aa [Homo sapiens]
Length = 131
Score = 153 bits (387), Expect = 2e-37
Identities = 78/117 (66%), Positives = 94/117 (80%)
Query: 4 RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
+GGK ++ SRS++AG+ FPVGR+ R ++KG+ RIG GAPVY+AAVLEYLTAEILEL
Sbjct: 7 QGGKARAKSKSRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVLEYLTAEILEL 66
Query: 64 AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 120
AGNA+RDNKK R+ PRH+ LA+ NDEELN+LL GVTIA GGVLPNI LL KK S
Sbjct: 67 AGNASRDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTES 123
>gi|106775678 histone cluster 2, H2aa4 [Homo sapiens]
Length = 130
Score = 152 bits (385), Expect = 4e-37
Identities = 79/120 (65%), Positives = 94/120 (78%)
Query: 4 RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
+GGK ++ SRS++AG+ FPVGR+ R ++KG+ R+G GAPVYMAAVLEYLTAEILEL
Sbjct: 7 QGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILEL 66
Query: 64 AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
AGNAARDNKK R+ PRH+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 67 AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126
>gi|4504251 histone cluster 2, H2aa3 [Homo sapiens]
Length = 130
Score = 152 bits (385), Expect = 4e-37
Identities = 79/120 (65%), Positives = 94/120 (78%)
Query: 4 RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
+GGK ++ SRS++AG+ FPVGR+ R ++KG+ R+G GAPVYMAAVLEYLTAEILEL
Sbjct: 7 QGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILEL 66
Query: 64 AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
AGNAARDNKK R+ PRH+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 67 AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126
>gi|24638446 histone cluster 2, H2ac [Homo sapiens]
Length = 129
Score = 152 bits (383), Expect = 6e-37
Identities = 78/117 (66%), Positives = 93/117 (79%)
Query: 4 RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
+GGK ++ SRS++AG+ FPVGR+ R ++KG+ R+G GAPVYMAAVLEYLTAEILEL
Sbjct: 7 QGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILEL 66
Query: 64 AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 120
AGNAARDNKK R+ PRH+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S
Sbjct: 67 AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTES 123
>gi|15617199 histone cluster 3, H2a [Homo sapiens]
Length = 130
Score = 152 bits (383), Expect = 6e-37
Identities = 78/120 (65%), Positives = 94/120 (78%)
Query: 4 RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
+GGK ++ SRS++AG+ FPVGR+ R ++KG+ R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7 QGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILEL 66
Query: 64 AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
AGNAARDNKK R+ PRH+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 67 AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHK 126
>gi|4504245 histone cluster 1, H2ac [Homo sapiens]
Length = 130
Score = 151 bits (382), Expect = 8e-37
Identities = 78/120 (65%), Positives = 94/120 (78%)
Query: 4 RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
+GGK ++ SRS++AG+ FPVGR+ R ++KG+ R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7 QGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILEL 66
Query: 64 AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
AGNAARDNKK R+ PRH+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 67 AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHK 126
>gi|29553970 H2A histone family, member J [Homo sapiens]
Length = 129
Score = 150 bits (380), Expect = 1e-36
Identities = 77/118 (65%), Positives = 94/118 (79%)
Query: 4 RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
+GGK ++ SRS++AG+ FPVGR+ R ++KG+ R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7 QGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILEL 66
Query: 64 AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSK 121
AGNAARDNKK R+ PRH+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S+
Sbjct: 67 AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESQ 124
>gi|19557656 histone cluster 1, H2ab [Homo sapiens]
Length = 130
Score = 150 bits (380), Expect = 1e-36
Identities = 77/120 (64%), Positives = 94/120 (78%)
Query: 4 RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
+GGK ++ +RS++AG+ FPVGR+ R ++KG+ R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7 QGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILEL 66
Query: 64 AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
AGNAARDNKK R+ PRH+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 67 AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHK 126
>gi|10645195 histone cluster 1, H2ae [Homo sapiens]
Length = 130
Score = 150 bits (380), Expect = 1e-36
Identities = 77/120 (64%), Positives = 94/120 (78%)
Query: 4 RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
+GGK ++ +RS++AG+ FPVGR+ R ++KG+ R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7 QGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILEL 66
Query: 64 AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
AGNAARDNKK R+ PRH+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 67 AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHK 126
>gi|10800130 histone cluster 1, H2ad [Homo sapiens]
Length = 130
Score = 150 bits (380), Expect = 1e-36
Identities = 77/120 (64%), Positives = 94/120 (78%)
Query: 4 RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
+GGK ++ +RS++AG+ FPVGR+ R ++KG+ R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7 QGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILEL 66
Query: 64 AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
AGNAARDNKK R+ PRH+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 67 AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126
>gi|10800132 histone cluster 1, H2ag [Homo sapiens]
Length = 130
Score = 150 bits (379), Expect = 2e-36
Identities = 77/120 (64%), Positives = 94/120 (78%)
Query: 4 RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
+GGK ++ +RS++AG+ FPVGR+ R ++KG+ R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7 QGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILEL 66
Query: 64 AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
AGNAARDNKK R+ PRH+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 67 AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126
>gi|4504239 histone cluster 1, H2ai [Homo sapiens]
Length = 130
Score = 150 bits (379), Expect = 2e-36
Identities = 77/120 (64%), Positives = 94/120 (78%)
Query: 4 RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
+GGK ++ +RS++AG+ FPVGR+ R ++KG+ R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7 QGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILEL 66
Query: 64 AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
AGNAARDNKK R+ PRH+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 67 AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126
>gi|18105045 histone cluster 1, H2ah [Homo sapiens]
Length = 128
Score = 150 bits (379), Expect = 2e-36
Identities = 77/120 (64%), Positives = 94/120 (78%)
Query: 4 RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
+GGK ++ +RS++AG+ FPVGR+ R ++KG+ R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7 QGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILEL 66
Query: 64 AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
AGNAARDNKK R+ PRH+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 67 AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126
>gi|4504241 histone cluster 1, H2ak [Homo sapiens]
Length = 130
Score = 150 bits (379), Expect = 2e-36
Identities = 77/120 (64%), Positives = 94/120 (78%)
Query: 4 RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
+GGK ++ +RS++AG+ FPVGR+ R ++KG+ R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7 QGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILEL 66
Query: 64 AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
AGNAARDNKK R+ PRH+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 67 AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126
>gi|4504249 histone cluster 1, H2am [Homo sapiens]
Length = 130
Score = 150 bits (379), Expect = 2e-36
Identities = 77/120 (64%), Positives = 94/120 (78%)
Query: 4 RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
+GGK ++ +RS++AG+ FPVGR+ R ++KG+ R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7 QGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILEL 66
Query: 64 AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
AGNAARDNKK R+ PRH+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 67 AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126
>gi|4504243 histone cluster 1, H2al [Homo sapiens]
Length = 130
Score = 150 bits (379), Expect = 2e-36
Identities = 77/120 (64%), Positives = 94/120 (78%)
Query: 4 RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
+GGK ++ +RS++AG+ FPVGR+ R ++KG+ R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7 QGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILEL 66
Query: 64 AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
AGNAARDNKK R+ PRH+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 67 AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126
>gi|10800144 histone cluster 1, H2aj [Homo sapiens]
Length = 128
Score = 150 bits (379), Expect = 2e-36
Identities = 77/120 (64%), Positives = 94/120 (78%)
Query: 4 RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
+GGK ++ +RS++AG+ FPVGR+ R ++KG+ R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7 QGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILEL 66
Query: 64 AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
AGNAARDNKK R+ PRH+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 67 AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126
>gi|4504255 H2A histone family, member Z [Homo sapiens]
Length = 128
Score = 121 bits (304), Expect = 9e-28
Identities = 64/117 (54%), Positives = 84/117 (71%), Gaps = 2/117 (1%)
Query: 6 GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELA 64
GK K+ SRS +AG+ FPVGR+ R++K + R+G A VY AA+LEYLTAE+LELA
Sbjct: 11 GKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELA 70
Query: 65 GNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSK 121
GNA++D K R+TPRH+ LA+ DEEL+ L+K TIA GGV+P+IH L+ KK K
Sbjct: 71 GNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQK 126
>gi|6912616 H2A histone family, member V isoform 1 [Homo sapiens]
Length = 128
Score = 121 bits (303), Expect = 1e-27
Identities = 64/117 (54%), Positives = 84/117 (71%), Gaps = 2/117 (1%)
Query: 6 GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELA 64
GK K+ SRS +AG+ FPVGR+ R++K + R+G A VY AA+LEYLTAE+LELA
Sbjct: 11 GKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELA 70
Query: 65 GNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSK 121
GNA++D K R+TPRH+ LA+ DEEL+ L+K TIA GGV+P+IH L+ KK K
Sbjct: 71 GNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQK 126
>gi|41406067 H2A histone family, member V isoform 3 [Homo sapiens]
Length = 102
Score = 107 bits (268), Expect = 1e-23
Identities = 56/101 (55%), Positives = 74/101 (73%), Gaps = 2/101 (1%)
Query: 22 IFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPRH 80
+FPVGR+ R++K + R+G A VY AA+LEYLTAE+LELAGNA++D K R+TPRH
Sbjct: 1 MFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 60
Query: 81 ILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSK 121
+ LA+ DEEL+ L+K TIA GGV+P+IH L+ KK K
Sbjct: 61 LQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQK 100
>gi|20357599 H2A histone family, member V isoform 2 [Homo sapiens]
Length = 114
Score = 102 bits (255), Expect = 4e-22
Identities = 55/99 (55%), Positives = 72/99 (72%), Gaps = 2/99 (2%)
Query: 6 GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELA 64
GK K+ SRS +AG+ FPVGR+ R++K + R+G A VY AA+LEYLTAE+LELA
Sbjct: 11 GKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELA 70
Query: 65 GNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASG 103
GNA++D K R+TPRH+ LA+ DEEL+ L+K TIA G
Sbjct: 71 GNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGG 108
>gi|154813199 poly (ADP-ribose) polymerase family, member 14 [Homo
sapiens]
Length = 1801
Score = 79.3 bits (194), Expect = 5e-15
Identities = 60/189 (31%), Positives = 85/189 (44%), Gaps = 5/189 (2%)
Query: 177 GTPADGFTVLSTKSLFLGQKLQVVQADIASIDSDAVVHPTNTDFYIGGEVGNTLEKKGGK 236
G+PA G S L G L V Q D+A + D VV+ +N D G + L K G
Sbjct: 785 GSPA-GQKCFSRTVLAPGVVLIVQQGDLARLPVDVVVNASNEDLKHYGGLAAALSKAAGP 843
Query: 237 EFVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWG---ADKCEELLEKTVKN 293
E ++ K+ G L A +S LP VIH P W A +C LL + V+
Sbjct: 844 ELQADCDQIVKREGRLLPGNATISKAGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQL 903
Query: 294 CLALADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYF-VSTMSSSIKTVYFVLFD 352
L LA+ K +SIA P+I SG GFP + I+ AI F +K +Y V
Sbjct: 904 SLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFKKDGHCLKEIYLVDVS 963
Query: 353 SESIGIYVQ 361
+++ + +
Sbjct: 964 EKTVEAFAE 972
Score = 76.6 bits (187), Expect = 3e-14
Identities = 46/177 (25%), Positives = 91/177 (51%), Gaps = 6/177 (3%)
Query: 194 GQKLQVVQADIASIDSDAVVHPTNTDFYIG-GEVGNTLEKKGGKEFVEAVLELRKKNGPL 252
G ++ +V+ + + +D VV+ D + G + +L +K G E E L+ + +
Sbjct: 1013 GLQMLLVKEGVQNAKTDVVVNSVPLDLVLSRGPLSKSLLEKAGPELQEE-LDTVGQGVAV 1071
Query: 253 EVAGAAVSAGHGLPAKFVIHCNSPVW--GADKCEELLEKTVKNCLALADDKKLKSIAFPS 310
+ ++ L ++V+H +P W G+ +++E ++ C+ + + LKSIAFP+
Sbjct: 1072 SMGTVLKTSSWNLDCRYVLHVVAPEWRNGSTSSLKIMEDIIRECMEITESLSLKSIAFPA 1131
Query: 311 IGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLF--DSESIGIYVQEMAK 365
IG+G GFPK A+LI+ + + +++ V+F+L D E+I + E A+
Sbjct: 1132 IGTGNLGFPKNIFAELIISEVFKFSSKNQLKTLQEVHFLLHPSDHENIQAFSDEFAR 1188
Score = 47.4 bits (111), Expect = 2e-05
Identities = 48/211 (22%), Positives = 86/211 (40%), Gaps = 28/211 (13%)
Query: 157 KSKKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLQVVQADIASIDSDAVVHPT 216
K+K QG +S DS G + S+ QV DI ++D +V+ T
Sbjct: 1201 KAKDTQGFYGTVSSPDS--------GVYEMKIGSIIF----QVASGDITKEEADVIVNST 1248
Query: 217 NTDFYIGGEVGNTLEKKGGKEFVEAVLEL--RKKNGPLEVAGAAVSAGHGLPAKFVIHCN 274
+ F + V + + G+ + ++KN + ++ G L K +IH
Sbjct: 1249 SNSFNLKAGVSKAILECAGQNVERECSQQAQQRKNDYI------ITGGGFLRCKNIIHV- 1301
Query: 275 SPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSY 334
+ G D ++ +V + L + K SI P+IG+G A+ I+ AI +
Sbjct: 1302 --IGGND-----VKSSVSSVLQECEKKNYSSICLPAIGTGNAKQHPDKVAEAIIDAIEDF 1354
Query: 335 FVSTMSSSIKTVYFVLFDSESIGIYVQEMAK 365
+ S+K V V+F + + ++ M K
Sbjct: 1355 VQKGSAQSVKKVKVVIFLPQVLDVFYANMKK 1385
>gi|165377137 poly (ADP-ribose) polymerase family, member 15 isoform
1 [Homo sapiens]
Length = 678
Score = 78.6 bits (192), Expect = 8e-15
Identities = 55/213 (25%), Positives = 106/213 (49%), Gaps = 9/213 (4%)
Query: 151 GKKGARKSKKKQGEVSKAASADSTTEGTPADGF-TVLSTKSLFLGQKLQVVQADIASIDS 209
G +GARK+ ++ S++ S D+ V+++ G L+++ D+ I +
Sbjct: 46 GNRGARKASRRSS--SRSMSRDNKFSKKDCLSIRNVVASIQTKEGLNLKLISGDVLYIWA 103
Query: 210 DAVVHPTNTDFYIGG-EVGNTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSAGHGLPAK 268
D +V+ + +GG + +K G ++ L+ R++ +V +++G L K
Sbjct: 104 DVIVNSVPMNLQLGGGPLSRAFLQKAGP-MLQKELDDRRRETEEKVGNIFMTSGCNLDCK 162
Query: 269 FVIHCNSPVW--GADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRNGFPKQTAAQL 326
V+H +P W GA+ +++ +K CL + SI FP IG+G FPK A+L
Sbjct: 163 AVLHAVAPYWNNGAETSWQIMANIIKKCLTTVEVLSFSSITFPMIGTGSLQFPKAVFAKL 222
Query: 327 ILKAISSYFVST--MSSSIKTVYFVLFDSESIG 357
IL + Y ST ++S ++ V+F+++ ++ G
Sbjct: 223 ILSEVFEYSSSTRPITSPLQEVHFLVYTNDDEG 255
Score = 54.7 bits (130), Expect = 1e-07
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 16/172 (9%)
Query: 198 QVVQADIASIDSDAVVHPTNTDFYIGGEVGNTLEKKGGK--EFVEAVLELRKKNGPLEVA 255
QV DIA+ D +V+ T F V + + G+ E AVL + +
Sbjct: 307 QVATGDIATEQVDVIVNSTARTFNRKSGVSRAILEGAGQAVESECAVLAAQPHRDFI--- 363
Query: 256 GAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGR 315
++ G L K +IH G D + KTV + L + +K S++ P+IG+G
Sbjct: 364 ---ITPGGCLKCKIIIHVPG---GKD-----VRKTVTSVLEECEQRKYTSVSLPAIGTGN 412
Query: 316 NGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKLD 367
G T A I+ AI + + S+KTV V+F E + I+ M K D
Sbjct: 413 AGKNPITVADNIIDAIVDFSSQHSTPSLKTVKVVIFQPELLNIFYDSMKKRD 464
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.130 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,436,701
Number of Sequences: 37866
Number of extensions: 615556
Number of successful extensions: 2661
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 2382
Number of HSP's gapped (non-prelim): 274
length of query: 369
length of database: 18,247,518
effective HSP length: 104
effective length of query: 265
effective length of database: 14,309,454
effective search space: 3792005310
effective search space used: 3792005310
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.