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Search of human proteins with 196123580
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|196123580 NADH dehydrogenase subunit 2 [Homo sapiens
neanderthalensis]
(347 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|196123580 NADH dehydrogenase subunit 2 [Homo sapiens neandert... 689 0.0
gi|251831108 NADH dehydrogenase subunit 2 [Homo sapiens] 686 0.0
gi|251831117 NADH dehydrogenase subunit 5 [Homo sapiens] 69 6e-12
gi|196123589 NADH dehydrogenase subunit 5 [Homo sapiens neandert... 67 2e-11
gi|196123588 NADH dehydrogenase subunit 4 [Homo sapiens neandert... 58 1e-08
gi|251831116 NADH dehydrogenase subunit 4 [Homo sapiens] 58 1e-08
gi|219802857 transmembrane protein 106C isoform b [Homo sapiens] 33 0.29
gi|219802797 transmembrane protein 106C isoform b [Homo sapiens] 33 0.29
gi|56549675 solute carrier family 41, member 3 isoform 3 [Homo s... 32 0.84
gi|56549673 solute carrier family 41, member 3 isoform 1 [Homo s... 32 0.84
gi|83367077 mucin 16 [Homo sapiens] 32 1.1
gi|196123584 ATP synthase F0 subunit 6 [Homo sapiens neanderthal... 31 1.4
gi|9665248 transporter 1, ATP-binding cassette, sub-family B [Ho... 30 2.4
gi|219802834 transmembrane protein 106C isoform a [Homo sapiens] 30 2.4
gi|13129026 transmembrane protein 106C isoform a [Homo sapiens] 30 2.4
gi|251831112 ATP synthase F0 subunit 6 [Homo sapiens] 30 4.2
gi|4826902 serine (or cysteine) proteinase inhibitor, clade B (o... 30 4.2
gi|4557351 butyrylcholinesterase precursor [Homo sapiens] 29 7.1
gi|109255241 natural resistance-associated macrophage protein 1 ... 28 9.3
gi|239754959 PREDICTED: similar to Protein MOST-1 [Homo sapiens] 28 9.3
gi|91982772 mucin 17 [Homo sapiens] 28 9.3
gi|5453621 solute carrier family 35 (CMP-sialic acid transporter... 28 9.3
>gi|196123580 NADH dehydrogenase subunit 2 [Homo sapiens
neanderthalensis]
Length = 347
Score = 689 bits (1777), Expect = 0.0
Identities = 347/347 (100%), Positives = 347/347 (100%)
Query: 1 MNPLAQPVIYSTIFAGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIKYF 60
MNPLAQPVIYSTIFAGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIKYF
Sbjct: 1 MNPLAQPVIYSTIFAGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIKYF 60
Query: 61 LTQATASMILLMAILFNNMLSGQWTMTNTTNQYSSLMIMMAMAMKLGMAPFHFWVPEVTQ 120
LTQATASMILLMAILFNNMLSGQWTMTNTTNQYSSLMIMMAMAMKLGMAPFHFWVPEVTQ
Sbjct: 61 LTQATASMILLMAILFNNMLSGQWTMTNTTNQYSSLMIMMAMAMKLGMAPFHFWVPEVTQ 120
Query: 121 GTPLTSGLLLLTWQKLAPISIMYQISPSLNVSLLLTLSILSIMAGSWGGLNQTQLRKILA 180
GTPLTSGLLLLTWQKLAPISIMYQISPSLNVSLLLTLSILSIMAGSWGGLNQTQLRKILA
Sbjct: 121 GTPLTSGLLLLTWQKLAPISIMYQISPSLNVSLLLTLSILSIMAGSWGGLNQTQLRKILA 180
Query: 181 YSSITHMGWMMAVLPYNPNMTILNLTIYIILTTTAFLLLNLNSSTTTLLLSRTWNKLTWL 240
YSSITHMGWMMAVLPYNPNMTILNLTIYIILTTTAFLLLNLNSSTTTLLLSRTWNKLTWL
Sbjct: 181 YSSITHMGWMMAVLPYNPNMTILNLTIYIILTTTAFLLLNLNSSTTTLLLSRTWNKLTWL 240
Query: 241 TPLIPSTLLSLGGLPPLTGFLPKWAIIEEFTKNNSLIIPTIMATITLLNLYFYLRLIYST 300
TPLIPSTLLSLGGLPPLTGFLPKWAIIEEFTKNNSLIIPTIMATITLLNLYFYLRLIYST
Sbjct: 241 TPLIPSTLLSLGGLPPLTGFLPKWAIIEEFTKNNSLIIPTIMATITLLNLYFYLRLIYST 300
Query: 301 SITLLPMSNNVKMKWQFEHTKPTPFLPTLITLTTLLLPISPFMLMVL 347
SITLLPMSNNVKMKWQFEHTKPTPFLPTLITLTTLLLPISPFMLMVL
Sbjct: 301 SITLLPMSNNVKMKWQFEHTKPTPFLPTLITLTTLLLPISPFMLMVL 347
>gi|251831108 NADH dehydrogenase subunit 2 [Homo sapiens]
Length = 347
Score = 686 bits (1771), Expect = 0.0
Identities = 345/347 (99%), Positives = 346/347 (99%)
Query: 1 MNPLAQPVIYSTIFAGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIKYF 60
MNPLAQPVIYSTIFAGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIKYF
Sbjct: 1 MNPLAQPVIYSTIFAGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIKYF 60
Query: 61 LTQATASMILLMAILFNNMLSGQWTMTNTTNQYSSLMIMMAMAMKLGMAPFHFWVPEVTQ 120
LTQATASMILLMAILFNNMLSGQWTMTNTTNQYSSLMIMMAMAMKLGMAPFHFWVPEVTQ
Sbjct: 61 LTQATASMILLMAILFNNMLSGQWTMTNTTNQYSSLMIMMAMAMKLGMAPFHFWVPEVTQ 120
Query: 121 GTPLTSGLLLLTWQKLAPISIMYQISPSLNVSLLLTLSILSIMAGSWGGLNQTQLRKILA 180
GTPLTSGLLLLTWQKLAPISIMYQISPSLNVSLLLTLSILSIMAGSWGGLNQTQLRKILA
Sbjct: 121 GTPLTSGLLLLTWQKLAPISIMYQISPSLNVSLLLTLSILSIMAGSWGGLNQTQLRKILA 180
Query: 181 YSSITHMGWMMAVLPYNPNMTILNLTIYIILTTTAFLLLNLNSSTTTLLLSRTWNKLTWL 240
YSSITHMGWMMAVLPYNPNMTILNLTIYIILTTTAFLLLNLNSSTTTLLLSRTWNKLTWL
Sbjct: 181 YSSITHMGWMMAVLPYNPNMTILNLTIYIILTTTAFLLLNLNSSTTTLLLSRTWNKLTWL 240
Query: 241 TPLIPSTLLSLGGLPPLTGFLPKWAIIEEFTKNNSLIIPTIMATITLLNLYFYLRLIYST 300
TPLIPSTLLSLGGLPPLTGFLPKWAIIEEFTKNNSLIIPTIMATITLLNLYFYLRLIYST
Sbjct: 241 TPLIPSTLLSLGGLPPLTGFLPKWAIIEEFTKNNSLIIPTIMATITLLNLYFYLRLIYST 300
Query: 301 SITLLPMSNNVKMKWQFEHTKPTPFLPTLITLTTLLLPISPFMLMVL 347
SITLLPMSNNVKMKWQFEHTKPTPFLPTLI LTTLLLPISPFMLM+L
Sbjct: 301 SITLLPMSNNVKMKWQFEHTKPTPFLPTLIALTTLLLPISPFMLMIL 347
>gi|251831117 NADH dehydrogenase subunit 5 [Homo sapiens]
Length = 603
Score = 68.9 bits (167), Expect = 6e-12
Identities = 88/361 (24%), Positives = 153/361 (42%), Gaps = 57/361 (15%)
Query: 10 YSTIFAGT-LITALSSHWFFTWVGLE-MNMLAFIPVLTKKMNPRSTEAAIKYFLTQATAS 67
Y IF T LI +++ F ++G E + +++F+ + + AAI+ L
Sbjct: 120 YLLIFLITMLILVTANNLFQLFIGWEGVGIMSFLLISWWYARADANTAAIQAILYNRIGD 179
Query: 68 MILLMAILFNNMLSGQW-----TMTNTTNQYSSLM-IMMAMAMKLGMAPFHFWVPEVTQG 121
+ ++A+ + + S W + N + L+ +++A A K H W+P +G
Sbjct: 180 IGFILALAWFILHSNSWDPQQMALLNANPSLTPLLGLLLAAAGKSAQLGLHPWLPSAMEG 239
Query: 122 TPLTSGLLLLTWQKLAPISIMYQISP-----SLNVSLLLTLSILSIMAGSWGGLNQTQLR 176
S LL + +A I ++ + P L +L L L ++ + + L Q ++
Sbjct: 240 PTPVSALLHSSTMVVAGIFLLIRFHPLAENSPLIQTLTLCLGAITTLFAAVCALTQNDIK 299
Query: 177 KILAYSSITHMGWMMAVLPYN-PNMTILNLTIYIILTTTAF-----LLLNLNSSTTTLLL 230
KI+A+S+ + +G MM + N P++ L++ + F ++ NLN+
Sbjct: 300 KIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNNEQDI--- 356
Query: 231 SRTWNKLTWLTPLIPSTL----LSLGGLPPLTGFLPKWAIIE----EFTKNNSLIIPTIM 282
R L PL ++L L+L G+P LTGF K IIE +T +L I I
Sbjct: 357 -RKMGGLLKTMPLTSTSLTIGSLALAGMPFLTGFYSKDHIIETANMSYTNAWALSITLIA 415
Query: 283 ATITLLNLYFYLRLIYSTSITLLPMSNNVKMKWQFEHTKPTPFLPTLITLT----TLLLP 338
++T YST + LL ++ P PTL + TLL P
Sbjct: 416 TSLT---------SAYSTRMILLTLTGQ-------------PRFPTLTNINENNPTLLNP 453
Query: 339 I 339
I
Sbjct: 454 I 454
>gi|196123589 NADH dehydrogenase subunit 5 [Homo sapiens
neanderthalensis]
Length = 603
Score = 67.0 bits (162), Expect = 2e-11
Identities = 86/361 (23%), Positives = 153/361 (42%), Gaps = 57/361 (15%)
Query: 10 YSTIFAGT-LITALSSHWFFTWVGLE-MNMLAFIPVLTKKMNPRSTEAAIKYFLTQATAS 67
Y IF T LI +++ F ++G E + +++F+ + + AAI+ L
Sbjct: 120 YLLIFLITMLILVTANNLFQLFIGWEGVGIMSFLLISWWYARADANTAAIQAILYNRIGD 179
Query: 68 MILLMAILFNNMLSGQW-----TMTNTTNQYSSLM-IMMAMAMKLGMAPFHFWVPEVTQG 121
+ ++A+ + + S W + N + L+ +++A A K H W+P +G
Sbjct: 180 IGFILALAWFILHSNSWDPQQMALLNANPSLTPLLGLLLAAAGKSAQLGLHPWLPSAMEG 239
Query: 122 TPLTSGLLLLTWQKLAPISIMYQISP-----SLNVSLLLTLSILSIMAGSWGGLNQTQLR 176
S LL + +A + ++ + P L +L L L ++ + + L Q ++
Sbjct: 240 PTPVSALLHSSTMVVAGVFLLIRFHPLAENSPLIQTLTLCLGAITTLFAAVCALTQNDIK 299
Query: 177 KILAYSSITHMGWMMAVLPYN-PNMTILNLTIYIILTTTAF-----LLLNLNSSTTTLLL 230
KI+A+S+ + +G M+ + N P++ L++ + F ++ NLN+
Sbjct: 300 KIVAFSTSSQLGLMVVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNNEQDI--- 356
Query: 231 SRTWNKLTWLTPLIPSTL----LSLGGLPPLTGFLPKWAIIE----EFTKNNSLIIPTIM 282
R L PL ++L L+L G+P LTGF K IIE +T +L I I
Sbjct: 357 -RKMGGLLKTMPLTSTSLTIGSLALAGMPFLTGFYSKDHIIETANMSYTNAWALSITLIA 415
Query: 283 ATITLLNLYFYLRLIYSTSITLLPMSNNVKMKWQFEHTKPTPFLPTLITLT----TLLLP 338
++T YST + LL ++ P PTL + TLL P
Sbjct: 416 TSLT---------SAYSTRMILLTLTGQ-------------PRFPTLTNINENNPTLLNP 453
Query: 339 I 339
I
Sbjct: 454 I 454
>gi|196123588 NADH dehydrogenase subunit 4 [Homo sapiens
neanderthalensis]
Length = 459
Score = 58.2 bits (139), Expect = 1e-08
Identities = 76/366 (20%), Positives = 156/366 (42%), Gaps = 40/366 (10%)
Query: 3 PLAQPVIYSTIFAGT----LITALSSHWFFTWVGLEMNMLAFIPVLTKKMN-PRSTEAAI 57
PL++ +Y ++ ++T ++ ++ E ++ + ++T+ N P A
Sbjct: 88 PLSRKKLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGT 147
Query: 58 KYFLTQATASMILLMAILFNN-----------MLSGQWTMTNTTNQYSSLMIMMAMAMKL 106
+ S+ LL+A+++ + L+ Q + N L MA +K+
Sbjct: 148 YFLFYTLVGSLPLLIALIYTHNTLGSLNILLLTLTAQELSNSWANNLMWLAYTMAFMVKM 207
Query: 107 GMAPFHFWVPEVTQGTPLTSGLLLLT-WQKLAPISIMYQISPSLNVSL------LLTLSI 159
+ H W+P+ P+ ++L KL +M +++ LN L LS+
Sbjct: 208 PLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMM-RLTLILNPLTKHMAYPFLVLSL 266
Query: 160 LSIMAGSWGGLNQTQLRKILAYSSITHMGWMMAVL----PYNPNMTILNLTIYIILTTTA 215
++ S L QT L+ ++AYSSI+HM ++ + P++ ++ + + + ++
Sbjct: 267 WGMIMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLL 326
Query: 216 FLLLNLNSSTTTLLLSRTWNKLTWLTPLIP-----STLLSLGGLPPLTGFLPKWAI-IEE 269
F L N N T + L L PL+ ++L +L LPP L + ++ +
Sbjct: 327 FCLANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANL-ALPPTINLLGELSVLVTT 385
Query: 270 FTKNNSLIIPT--IMATITLLNLYFYLRLIYSTSITLLPMSNNVKMKWQFEHTKPTPFLP 327
F+ +N ++ T M L +LY + + +L NN+K + E+T L
Sbjct: 386 FSWSNITLLLTGLNMLVTALYSLYMFTTTQWG---SLTHHINNMKPSFTRENTLMFMHLS 442
Query: 328 TLITLT 333
++ L+
Sbjct: 443 PILLLS 448
>gi|251831116 NADH dehydrogenase subunit 4 [Homo sapiens]
Length = 459
Score = 58.2 bits (139), Expect = 1e-08
Identities = 76/366 (20%), Positives = 156/366 (42%), Gaps = 40/366 (10%)
Query: 3 PLAQPVIYSTIFAGT----LITALSSHWFFTWVGLEMNMLAFIPVLTKKMN-PRSTEAAI 57
PL++ +Y ++ ++T ++ ++ E ++ + ++T+ N P A
Sbjct: 88 PLSRKKLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGT 147
Query: 58 KYFLTQATASMILLMAILFNN-----------MLSGQWTMTNTTNQYSSLMIMMAMAMKL 106
+ S+ LL+A+++ + L+ Q + N L MA +K+
Sbjct: 148 YFLFYTLVGSLPLLIALIYTHNTLGSLNILLLTLTAQELSNSWANNLMWLAYTMAFMVKM 207
Query: 107 GMAPFHFWVPEVTQGTPLTSGLLLLT-WQKLAPISIMYQISPSLNVSL------LLTLSI 159
+ H W+P+ P+ ++L KL +M +++ LN L LS+
Sbjct: 208 PLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMM-RLTLILNPLTKHMAYPFLVLSL 266
Query: 160 LSIMAGSWGGLNQTQLRKILAYSSITHMGWMMAVL----PYNPNMTILNLTIYIILTTTA 215
++ S L QT L+ ++AYSSI+HM ++ + P++ ++ + + + ++
Sbjct: 267 WGMIMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLL 326
Query: 216 FLLLNLNSSTTTLLLSRTWNKLTWLTPLIP-----STLLSLGGLPPLTGFLPKWAI-IEE 269
F L N N T + L L PL+ ++L +L LPP L + ++ +
Sbjct: 327 FCLANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANL-ALPPTINLLGELSVLVTT 385
Query: 270 FTKNNSLIIPT--IMATITLLNLYFYLRLIYSTSITLLPMSNNVKMKWQFEHTKPTPFLP 327
F+ +N ++ T M L +LY + + +L NN+K + E+T L
Sbjct: 386 FSWSNITLLLTGLNMLVTALYSLYMFTTTQWG---SLTHHINNMKPSFTRENTLMFMHLS 442
Query: 328 TLITLT 333
++ L+
Sbjct: 443 PILLLS 448
>gi|219802857 transmembrane protein 106C isoform b [Homo sapiens]
Length = 231
Score = 33.5 bits (75), Expect = 0.29
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 270 FTKNNSLIIPTIMATITLLNLYFYLRLIYSTSITLLPMSNNVKMKWQFEHTKPTPFLPTL 329
F K +SL+I TIMAT+ + N FY + S S + M+ V + E P ++
Sbjct: 125 FNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVVNFTGKAEMGGPFSYVYFF 184
Query: 330 ITLTTLLL 337
T+ +L+
Sbjct: 185 CTVPEILV 192
>gi|219802797 transmembrane protein 106C isoform b [Homo sapiens]
Length = 231
Score = 33.5 bits (75), Expect = 0.29
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 270 FTKNNSLIIPTIMATITLLNLYFYLRLIYSTSITLLPMSNNVKMKWQFEHTKPTPFLPTL 329
F K +SL+I TIMAT+ + N FY + S S + M+ V + E P ++
Sbjct: 125 FNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVVNFTGKAEMGGPFSYVYFF 184
Query: 330 ITLTTLLL 337
T+ +L+
Sbjct: 185 CTVPEILV 192
>gi|56549675 solute carrier family 41, member 3 isoform 3 [Homo
sapiens]
Length = 471
Score = 32.0 bits (71), Expect = 0.84
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 28/119 (23%)
Query: 201 TILNLTIYIILTTTAFLLLNLNSSTTTLLLSRTWNKLTWLTPLIPST-----LLSLGGL- 254
+++N +++L +LL L T L L+ +LTW L P L LG L
Sbjct: 364 SVINSQTFVVL----YLLAGLIQVTILLYLAEVMVRLTWHQALDPDNHCIPYLTGLGDLL 419
Query: 255 -----------PPLTGFLPKWAIIEEFTKNNSLIIPTIMATITLLNLYFYLRLIYSTSI 302
P P W +I+ F LI ++LL+ YF L+ TSI
Sbjct: 420 GSSSVGHTAAVPRRCTASPGWGLIQPFICTQHLI-------VSLLSFYFPFCLLAKTSI 471
>gi|56549673 solute carrier family 41, member 3 isoform 1 [Homo
sapiens]
Length = 507
Score = 32.0 bits (71), Expect = 0.84
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 28/119 (23%)
Query: 201 TILNLTIYIILTTTAFLLLNLNSSTTTLLLSRTWNKLTWLTPLIPST-----LLSLGGL- 254
+++N +++L +LL L T L L+ +LTW L P L LG L
Sbjct: 400 SVINSQTFVVL----YLLAGLIQVTILLYLAEVMVRLTWHQALDPDNHCIPYLTGLGDLL 455
Query: 255 -----------PPLTGFLPKWAIIEEFTKNNSLIIPTIMATITLLNLYFYLRLIYSTSI 302
P P W +I+ F LI ++LL+ YF L+ TSI
Sbjct: 456 GSSSVGHTAAVPRRCTASPGWGLIQPFICTQHLI-------VSLLSFYFPFCLLAKTSI 507
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 31.6 bits (70), Expect = 1.1
Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 25/156 (16%)
Query: 144 QISPSLNVS--LLLTLSILSIMAGSWGGLNQTQLRKILAYSSITHMGWMMAVLPYNPNMT 201
Q + SL++S ++ LS IM S TQ LA S +T LP +MT
Sbjct: 9633 QSTMSLDISDEVVTRLSTSPIMTESAEITITTQTGYSLATSQVT--------LPLGTSMT 9684
Query: 202 ILNLTIYIILTTTAFLLLNLNSSTTTLLLSRTWNKLTWLTPLIPSTL---LSLGGLPPLT 258
L+ T + + L+ S T L+SR L+W +P T SL LP T
Sbjct: 9685 FLS-------GTHSTMSQGLSHSEMTNLMSRGPESLSWTSPRFVETTRSSSSLTSLPLTT 9737
Query: 259 GFLPKWAIIEEFTKNN-----SLIIPTIMATITLLN 289
P + + + + ++ SLI+P ++ T +L+
Sbjct: 9738 SLSPVSSTLLDSSPSSPLPVTSLILPGLVKTTEVLD 9773
>gi|196123584 ATP synthase F0 subunit 6 [Homo sapiens
neanderthalensis]
Length = 226
Score = 31.2 bits (69), Expect = 1.4
Identities = 32/149 (21%), Positives = 61/149 (40%), Gaps = 6/149 (4%)
Query: 201 TILNLTIYIILTTTAFLLLNLNSSTTTLLLSRTWNKLTWLTPLIPSTLLSLGGLPPLTGF 260
TIL L +++ LL+ ++ L+ +R WL L ++++ T
Sbjct: 13 TILGLPAAVLIILFPPLLI---PTSKYLINNRLITTQQWLIKLTSKQMMAMHNTKGRTWS 69
Query: 261 LPKWAIIEEFTKNNSL-IIPTIMATITLLNLYFYLRLIYSTSITLLPMSNNVK--MKWQF 317
L ++I T N L ++P T L++ + + ++ + +K +
Sbjct: 70 LMLVSLIIFITTTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGAVIMGFRSKIKNALAHFL 129
Query: 318 EHTKPTPFLPTLITLTTLLLPISPFMLMV 346
PTP +P L+ + T+ L I P L V
Sbjct: 130 PQGTPTPLIPMLVIIETISLLIQPVALAV 158
>gi|9665248 transporter 1, ATP-binding cassette, sub-family B [Homo
sapiens]
Length = 808
Score = 30.4 bits (67), Expect = 2.4
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 119 TQGTPLTSGLLLLTW---QKLAPISIMYQISPSLNVSLLLTLSILSIM---AGSWGGLNQ 172
T L+ L L W + L + IM S SL + L+TL +L ++ G W L +
Sbjct: 354 TLSDSLSENLSLFLWYLVRGLCLLGIMLWGSVSLTMVTLITLPLLFLLPKKVGKWYQLLE 413
Query: 173 TQLRKILAYSS 183
Q+R+ LA SS
Sbjct: 414 VQVRESLAKSS 424
>gi|219802834 transmembrane protein 106C isoform a [Homo sapiens]
Length = 250
Score = 30.4 bits (67), Expect = 2.4
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 270 FTKNNSLIIPTIMATITLLNLYFYLRLIYSTSITLLPMSNNV 311
F K +SL+I TIMAT+ + N FY + S S + M+ V
Sbjct: 125 FNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVV 166
>gi|13129026 transmembrane protein 106C isoform a [Homo sapiens]
Length = 250
Score = 30.4 bits (67), Expect = 2.4
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 270 FTKNNSLIIPTIMATITLLNLYFYLRLIYSTSITLLPMSNNV 311
F K +SL+I TIMAT+ + N FY + S S + M+ V
Sbjct: 125 FNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVV 166
>gi|251831112 ATP synthase F0 subunit 6 [Homo sapiens]
Length = 226
Score = 29.6 bits (65), Expect = 4.2
Identities = 31/149 (20%), Positives = 60/149 (40%), Gaps = 6/149 (4%)
Query: 201 TILNLTIYIILTTTAFLLLNLNSSTTTLLLSRTWNKLTWLTPLIPSTLLSLGGLPPLTGF 260
TIL L +++ LL+ ++ L+ +R WL L ++++ T
Sbjct: 13 TILGLPAAVLIILFPPLLI---PTSKYLINNRLITTQQWLIKLTSKQMMTMHNTKGRTWS 69
Query: 261 LPKWAIIEEFTKNNSL-IIPTIMATITLLNLYFYLRLIYSTSITLLPMSNNVK--MKWQF 317
L ++I N L ++P T L++ + + ++ + +K +
Sbjct: 70 LMLVSLIIFIATTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVIMGFRSKIKNALAHFL 129
Query: 318 EHTKPTPFLPTLITLTTLLLPISPFMLMV 346
PTP +P L+ + T+ L I P L V
Sbjct: 130 PQGTPTPLIPMLVIIETISLLIQPMALAV 158
Score = 28.5 bits (62), Expect = 9.3
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 18/163 (11%)
Query: 85 TMTNTTNQYSSLM-----IMMAMAMKLGMAPFHFWVP------EVTQGTPLTSGLLLLTW 133
TM NT + SLM I +A LG+ P H + P + PL +G +++ +
Sbjct: 59 TMHNTKGRTWSLMLVSLIIFIATTNLLGLLP-HSFTPTTQLSMNLAMAIPLWAGTVIMGF 117
Query: 134 Q---KLAPISIMYQISPSLNVSLLLTLSILSIMAGSWGGLNQTQLRKILAYSSITHM--G 188
+ K A + Q +P+ + +L+ + +S++ L I A + H+
Sbjct: 118 RSKIKNALAHFLPQGTPTPLIPMLVIIETISLLIQPMA-LAVRLTANITAGHLLMHLIGS 176
Query: 189 WMMAVLPYNPNMTILNLTIYIILTTTAFLLLNLNSSTTTLLLS 231
+A+ N T++ TI I+LT + + + TLL+S
Sbjct: 177 ATLAMSTINLPSTLIIFTILILLTILEIAVALIQAYVFTLLVS 219
>gi|4826902 serine (or cysteine) proteinase inhibitor, clade B
(ovalbumin), member 10 [Homo sapiens]
Length = 397
Score = 29.6 bits (65), Expect = 4.2
Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 26/166 (15%)
Query: 29 TWVGLEMNMLAFIPV---LTKKMNP---RSTEAAIKYFL----TQATASMILLMAILFNN 78
T+ G E + F+ + K +N R TE I+ L +T MIL+ A+ F
Sbjct: 132 TYFGAEPQPVNFVEASDQIRKDINSWVERQTEGKIQNLLPDDSVDSTTRMILVNALYFKG 191
Query: 79 MLSGQWTMTNTT------NQYSSLMIMMAMAMKLGMAPFHFWVPEVTQGTPLTSGLLLLT 132
+ Q+ + NTT N+ +S + M M MK + FH P+ GL L
Sbjct: 192 IWEHQFLVQNTTEKPFRINETTSKPVQM-MFMKKKLHIFHIEKPKAV-------GLQL-- 241
Query: 133 WQKLAPISIMYQISPSLNVSLLLTLSILSIMAGSWGGLNQTQLRKI 178
+ K +S++ + +N L +I W + +L ++
Sbjct: 242 YYKSRDLSLLILLPEDINGLEQLEKAITYEKLNEWTSADMMELYEV 287
>gi|4557351 butyrylcholinesterase precursor [Homo sapiens]
Length = 602
Score = 28.9 bits (63), Expect = 7.1
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 171 NQTQLRKILAYSSITHMGWMMAVLPYNPNMTILNLTIYIILTTTAFLLLNLNSSTTTLLL 230
N T+ +IL+ S + W NPN T N T + + +T L LN+ +T ++
Sbjct: 483 NYTKAEEILSRSIVKR--WANFAKYGNPNETQNNSTSWPVFKSTEQKYLTLNTESTRIMT 540
Query: 231 SRTWNKLTWLTPLIPSTLLSLGGL 254
+ + T P L G +
Sbjct: 541 KLRAQQCRFWTSFFPKVLEMTGNI 564
>gi|109255241 natural resistance-associated macrophage protein 1
[Homo sapiens]
Length = 550
Score = 28.5 bits (62), Expect = 9.3
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 232 RTWNKLTWLTPLIPSTLLSLGGLPPLTGFLPKWAIIEEFTKN--NSLIIPTIMATITLLN 289
R + L L ++ S LL LP LT F +++EF N ++ +IM + +N
Sbjct: 422 RDLSGLNDLLNVLQSLLLPFAVLPILT-FTSMPTLMQEFANGLLNKVVTSSIMVLVCAIN 480
Query: 290 LYFYLRLIYS 299
LYF + + S
Sbjct: 481 LYFVVSYLPS 490
>gi|239754959 PREDICTED: similar to Protein MOST-1 [Homo sapiens]
Length = 99
Score = 28.5 bits (62), Expect = 9.3
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 232 RTWNKLTWLTPLIPST-LLSLGGLPPLTGFLPKW 264
R W + WLTP+IP+ GGLP L P W
Sbjct: 65 RHWAR--WLTPVIPALWKAEAGGLPELRSSRPAW 96
>gi|91982772 mucin 17 [Homo sapiens]
Length = 4493
Score = 28.5 bits (62), Expect = 9.3
Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 36/167 (21%)
Query: 210 ILTTTAFLLLNLNSSTTTLLLSRTWNKLTWLTPLIPSTLL-------SLGGLPPL---TG 259
+LT+T ++ + TT+ +S T + T LT L+ ST L S+ PPL T
Sbjct: 3846 LLTSTKAGSFSIPAEVTTIRISITSERSTPLTTLLVSTTLPTSFPGASIASTPPLDTSTT 3905
Query: 260 FLPKW-----------------AIIEEFTKNNSLIIPTIMATITLLNLY------FYLRL 296
F P I E T ++ IP+ T + +++ +
Sbjct: 3906 FTPSTDTASTPTIPVATTISVSVITEGSTPGTTIFIPSTPVTSSTADVFPATTGAVSTPV 3965
Query: 297 IYSTSITLLPMSNNVKMKWQFEHTK--PTPFLPTLITLTTLLLPISP 341
I ST + P +++ F TK TP + T LT + + +P
Sbjct: 3966 ITSTELN-TPSTSSSSTTTSFSTTKEFTTPAMTTAAPLTYVTMSTAP 4011
>gi|5453621 solute carrier family 35 (CMP-sialic acid transporter),
member A1 [Homo sapiens]
Length = 337
Score = 28.5 bits (62), Expect = 9.3
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 151 VSLLLTLSILSIMAGSWGGLNQTQLRKILAY-SSITHMGWMMAVLPYNPNMTILNLTIY- 208
+ LLL++ IL+ GS G + +L + + V NM L L+
Sbjct: 54 IKLLLSVGILAKETGSLGRFKASLRENVLGSPKELLKLSVPSLVYAVQNNMAFLALSNLD 113
Query: 209 -IILTTTAFLLLNLNSSTTTLLLSRTWNKLTWLT 241
+ T L + + T L+L+RT +KL W++
Sbjct: 114 AAVYQVTYQLKIPCTALCTVLMLNRTLSKLQWVS 147
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,298,700
Number of Sequences: 37866
Number of extensions: 432419
Number of successful extensions: 1469
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1450
Number of HSP's gapped (non-prelim): 30
length of query: 347
length of database: 18,247,518
effective HSP length: 103
effective length of query: 244
effective length of database: 14,347,320
effective search space: 3500746080
effective search space used: 3500746080
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.