Search of human proteins with 193804854

Search of human proteins with 193804854

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|193804854 hypothetical protein LOC79742 isoform 1 [Homo
sapiens]
         (433 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|193804854 hypothetical protein LOC79742 isoform 1 [Homo sapiens]   880   0.0  
gi|193804856 hypothetical protein LOC79742 isoform 2 [Homo sapiens]   340   2e-93
gi|27734895 hypothetical protein LOC205428 isoform a [Homo sapiens]   170   3e-42
gi|197333863 hypothetical protein LOC205428 isoform b [Homo sapi...    70   4e-12
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s...    32   1.1  
gi|195546915 hypothetical protein LOC125704 [Homo sapiens]             30   5.6  
gi|14149631 ring finger protein 112 [Homo sapiens]                     30   5.6  
gi|24497533 homeobox C10 [Homo sapiens]                                29   7.3  
gi|157412247 RUN and SH3 domain containing 1 isoform b [Homo sap...    29   9.5  
gi|157412245 RUN and SH3 domain containing 1 isoform a [Homo sap...    29   9.5  
gi|190341068 forkhead-associated (FHA) phosphopeptide binding do...    29   9.5  
gi|24308458 Lix1 homolog (mouse) like [Homo sapiens]                   29   9.5  

>gi|193804854 hypothetical protein LOC79742 isoform 1 [Homo sapiens]
          Length = 433

 Score =  880 bits (2273), Expect = 0.0
 Identities = 433/433 (100%), Positives = 433/433 (100%)

Query: 1   MEPQLGPEAAALRPGWLALLLWVSALSCSFSLPASSLSSLVPQVRTSYNFGRTFLGLDKC 60
           MEPQLGPEAAALRPGWLALLLWVSALSCSFSLPASSLSSLVPQVRTSYNFGRTFLGLDKC
Sbjct: 1   MEPQLGPEAAALRPGWLALLLWVSALSCSFSLPASSLSSLVPQVRTSYNFGRTFLGLDKC 60

Query: 61  NACIGTSICKKFFKEEIRSDNWLASHLGLPPDSLLSYPANYSDDSKIWRPVEIFRLVSKY 120
           NACIGTSICKKFFKEEIRSDNWLASHLGLPPDSLLSYPANYSDDSKIWRPVEIFRLVSKY
Sbjct: 61  NACIGTSICKKFFKEEIRSDNWLASHLGLPPDSLLSYPANYSDDSKIWRPVEIFRLVSKY 120

Query: 121 QNEISDRRICASASAPKTCSIERVLRKTERFQKWLQAKRLTPDLVQGLASPLLRCPSQRL 180
           QNEISDRRICASASAPKTCSIERVLRKTERFQKWLQAKRLTPDLVQGLASPLLRCPSQRL
Sbjct: 121 QNEISDRRICASASAPKTCSIERVLRKTERFQKWLQAKRLTPDLVQGLASPLLRCPSQRL 180

Query: 181 LDRVVRRYAEVADAGSIFMDHFTDRDKLRLLYTLAVNSHPILLQIFPGAEGWPLPKYLGS 240
           LDRVVRRYAEVADAGSIFMDHFTDRDKLRLLYTLAVNSHPILLQIFPGAEGWPLPKYLGS
Sbjct: 181 LDRVVRRYAEVADAGSIFMDHFTDRDKLRLLYTLAVNSHPILLQIFPGAEGWPLPKYLGS 240

Query: 241 CGRFLVSTSTRPLQEFYDAPPDQAADLAYQLLGVLESLRSNDLNYFFYFTHIDAGMFGVF 300
           CGRFLVSTSTRPLQEFYDAPPDQAADLAYQLLGVLESLRSNDLNYFFYFTHIDAGMFGVF
Sbjct: 241 CGRFLVSTSTRPLQEFYDAPPDQAADLAYQLLGVLESLRSNDLNYFFYFTHIDAGMFGVF 300

Query: 301 NNGHLFIRDASAVGVIDKQEGSQEANRAGENKDIFSCLVSGCQAQLPSCESISEKQSLVL 360
           NNGHLFIRDASAVGVIDKQEGSQEANRAGENKDIFSCLVSGCQAQLPSCESISEKQSLVL
Sbjct: 301 NNGHLFIRDASAVGVIDKQEGSQEANRAGENKDIFSCLVSGCQAQLPSCESISEKQSLVL 360

Query: 361 VCQKLLPRLLQGRFPSPVQDDIDSILVQCGDSIRPDPEVLGAASQLKDILRPLRTCDSRF 420
           VCQKLLPRLLQGRFPSPVQDDIDSILVQCGDSIRPDPEVLGAASQLKDILRPLRTCDSRF
Sbjct: 361 VCQKLLPRLLQGRFPSPVQDDIDSILVQCGDSIRPDPEVLGAASQLKDILRPLRTCDSRF 420

Query: 421 AYRYPDCKYNDKF 433
           AYRYPDCKYNDKF
Sbjct: 421 AYRYPDCKYNDKF 433


>gi|193804856 hypothetical protein LOC79742 isoform 2 [Homo sapiens]
          Length = 182

 Score =  340 bits (871), Expect = 2e-93
 Identities = 166/166 (100%), Positives = 166/166 (100%)

Query: 1   MEPQLGPEAAALRPGWLALLLWVSALSCSFSLPASSLSSLVPQVRTSYNFGRTFLGLDKC 60
           MEPQLGPEAAALRPGWLALLLWVSALSCSFSLPASSLSSLVPQVRTSYNFGRTFLGLDKC
Sbjct: 1   MEPQLGPEAAALRPGWLALLLWVSALSCSFSLPASSLSSLVPQVRTSYNFGRTFLGLDKC 60

Query: 61  NACIGTSICKKFFKEEIRSDNWLASHLGLPPDSLLSYPANYSDDSKIWRPVEIFRLVSKY 120
           NACIGTSICKKFFKEEIRSDNWLASHLGLPPDSLLSYPANYSDDSKIWRPVEIFRLVSKY
Sbjct: 61  NACIGTSICKKFFKEEIRSDNWLASHLGLPPDSLLSYPANYSDDSKIWRPVEIFRLVSKY 120

Query: 121 QNEISDRRICASASAPKTCSIERVLRKTERFQKWLQAKRLTPDLVQ 166
           QNEISDRRICASASAPKTCSIERVLRKTERFQKWLQAKRLTPDLVQ
Sbjct: 121 QNEISDRRICASASAPKTCSIERVLRKTERFQKWLQAKRLTPDLVQ 166


>gi|27734895 hypothetical protein LOC205428 isoform a [Homo sapiens]
          Length = 430

 Score =  170 bits (430), Expect = 3e-42
 Identities = 123/365 (33%), Positives = 184/365 (50%), Gaps = 15/365 (4%)

Query: 15  GWLALLLWVSALSCSFSLPASSLSSLVPQVRTSYNFGRTFLGLDKCNACIGTSICKKFFK 74
           G L+  L ++AL     L      SL+   + +    R FL L+KC AC GTS C++F  
Sbjct: 10  GRLSRSLKLAALGSLLVLMVLHSPSLLASWQRNELTDRRFLQLNKCPACFGTSWCRRFLN 69

Query: 75  EEIRSDNWLASHLGLPPDSLLSYPANYSDDSKIWRP-VEIFRLVSKYQNEISDRRICASA 133
            ++  + W    L    +    Y A Y +  +  R  V + RL S+ +    D+ IC  A
Sbjct: 70  GQVVFEAWGRLRLLDFLNVKNVYFAQYGEPREGGRRRVVLKRLGSQRELAQLDQSICKRA 129

Query: 134 SAPKTCSIERVLRKTERFQKWLQAKRLTPDLVQGLASPLLRCPSQRLLDRVVRRYAEVAD 193
           +    C + + + +TE  +     + LTP+ V+G  S L+ CPSQRLLDR+VRRYAE  D
Sbjct: 130 TGRPRCDLLQAMPRTEFARLNGDVRLLTPEAVEGW-SDLVHCPSQRLLDRLVRRYAETKD 188

Query: 194 AGSIFMDHFTDRDKLRLLYTLAVNSHPILLQIFPGAEGWPLPKYLGSCGRFL-VSTSTRP 252
           +GS  + +  D ++++LL TLA N  P++LQ FP  EGWP  KYLG+CGR + V+     
Sbjct: 189 SGSFLLRNLKDSERMQLLLTLAFNPEPLVLQSFPSDEGWPFAKYLGACGRMVAVNYVGEE 248

Query: 253 LQEFYDAPPDQAADLAYQLLGVLESLRSNDLNYFFYFTHIDAGMFGVF-NNGHLFIRDAS 311
           L  +++AP ++  DLA+QL+ + E L +ND  +  Y   +    F V   +G + I DA 
Sbjct: 249 LWSYFNAPWEKRVDLAWQLMEIAEQLTNNDFEFALYLLDVSFDNFAVGPRDGKVIIVDAE 308

Query: 312 AVGVIDKQEGSQEANRAGENKDIF------SCLVSGCQAQLPS--CESISEKQSLVLVCQ 363
            V V DK+   Q      EN D++       C    C +      C   +   +   VCQ
Sbjct: 309 NVLVADKRLIRQ---NKPENWDVWYESKFDDCDKEACLSFSKEILCARATVDHNYYAVCQ 365

Query: 364 KLLPR 368
            LL R
Sbjct: 366 NLLSR 370


>gi|197333863 hypothetical protein LOC205428 isoform b [Homo
           sapiens]
          Length = 221

 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 50/153 (32%), Positives = 72/153 (47%), Gaps = 13/153 (8%)

Query: 226 FPGAEGWPLPKYLGSCGRFL-VSTSTRPLQEFYDAPPDQAADLAYQLLGVLESLRSNDLN 284
           FP  EGWP  KYLG+CGR + V+     L  +++AP ++  DLA+QL+ + E L +ND  
Sbjct: 12  FPSDEGWPFAKYLGACGRMVAVNYVGEELWSYFNAPWEKRVDLAWQLMEIAEQLTNNDFE 71

Query: 285 YFFYFTHIDAGMFGVF-NNGHLFIRDASAVGVIDKQEGSQEANRAGENKDIF------SC 337
           +  Y   +    F V   +G + I DA  V V DK+   Q      EN D++       C
Sbjct: 72  FALYLLDVSFDNFAVGPRDGKVIIVDAENVLVADKRLIRQ---NKPENWDVWYESKFDDC 128

Query: 338 LVSGCQAQLPS--CESISEKQSLVLVCQKLLPR 368
               C +      C   +   +   VCQ LL R
Sbjct: 129 DKEACLSFSKEILCARATVDHNYYAVCQNLLSR 161


>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
            sapiens]
          Length = 4911

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 371  QGRFPSPVQDDIDSILVQCGDSIRPDP 397
            +G F  P +D+ID  L + G S++PDP
Sbjct: 4368 KGTFKPPCEDEIDEFLKKLGTSLKPDP 4394


>gi|195546915 hypothetical protein LOC125704 [Homo sapiens]
          Length = 419

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 51/229 (22%), Positives = 80/229 (34%), Gaps = 23/229 (10%)

Query: 205 RDKLRLLYTLAVNSHPILLQIFPGAEGWPLPKYLGSCGRF-----LVSTSTR-----PLQ 254
           R +L  L+ L      +   +        LP  LGSCG F     L + S       PL 
Sbjct: 181 RGQLASLWALLQQEEYVYFSLLQDLSPHVLP-VLGSCGHFYAVEFLAAGSPHHRALFPLD 239

Query: 255 EFYDAPPDQAA----DLAYQLLGVLESLRSNDLNYFFYFTHIDAGMFGVFNNGHLFIRDA 310
               AP    A    D+A   L ++    S D ++  +   I    F + ++  +   D 
Sbjct: 240 RAPGAPGGGQAKAISDIALSFLDMVNHFDS-DFSHRLHLCDIKPENFAIRSDFTVVAIDV 298

Query: 311 SAVGVIDKQEGSQEANRAG-ENKDIFSCLVSGCQAQLPSCESISEKQSLVLVCQKLLPRL 369
                  K     E N  G E+ + F C  S C  ++  C +     +L ++C K+    
Sbjct: 299 DMAFFEPKMREILEQNCTGDEDCNFFDCF-SRCDLRVNKCGAQRVNNNLQVICDKIFRHW 357

Query: 370 LQGRFPS-----PVQDDIDSILVQCGDSIRPDPEVLGAASQLKDILRPL 413
                 S      +Q  +   + +C D   P      AAS +   LR L
Sbjct: 358 FSAPLKSSAVSFQLQLQLQEAVQECADPGVPSGNTRRAASSVFWKLRQL 406


>gi|14149631 ring finger protein 112 [Homo sapiens]
          Length = 632

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 11/99 (11%)

Query: 218 SHPILLQIFPGAEGWPLPKYLGSCGRFLVSTSTRPLQEFYDAPPDQAADLAYQLLGVLES 277
           SHP LL    G EG  +  +L   G  +    +R  +    A     +  +YQ+L   + 
Sbjct: 229 SHPFLL----GKEGKKVAVFLVDTGDAMSPELSRETRIKLCALTTMLS--SYQILSTSQE 282

Query: 278 LRSNDLNYFFYFTHIDAGM---FGVFNNGH--LFIRDAS 311
           L+  DL+Y   F H+   M   +G+    H  L +RD+S
Sbjct: 283 LKDTDLDYLEMFVHVAEVMGKHYGMVPIQHLDLLVRDSS 321


>gi|24497533 homeobox C10 [Homo sapiens]
          Length = 342

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 39/138 (28%), Positives = 53/138 (38%), Gaps = 9/138 (6%)

Query: 29  SFSLPASSLSSLVPQVRTSYNFGRTFLGLDKCNACIGTSICKKFFKEEIRSDNWLASHLG 88
           S  LP S L      V + Y    ++  LDK   C G +  +  F E+  S N  A HL 
Sbjct: 130 SHPLPESCLGEHEVPVPSYYRASPSYSALDKTPHCSGANDFEAPF-EQRASLNPRAEHLE 188

Query: 89  LPP-DSLLSYPANYSDDSKIWRPVEIFRLVS-----KYQNEISDRRICASASAPKTCSIE 142
            P     +S+P     DS+   P EI    S        +E    R  A+ S+P T   E
Sbjct: 189 SPQLGGKVSFPETPKSDSQTPSPNEIKTEQSLAGPKGSPSESEKERAKAADSSPDTSDNE 248

Query: 143 --RVLRKTERFQKWLQAK 158
               ++       WL AK
Sbjct: 249 AKEEIKAENTTGNWLTAK 266


>gi|157412247 RUN and SH3 domain containing 1 isoform b [Homo
           sapiens]
          Length = 796

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 314 GVIDKQEGSQEANRAGENKDIFSCLVSGCQAQLPSCESISEKQSLVLVCQKLLP 367
           G+ ++Q+ SQE   A    D       GC + L SC  +S  +S V V  + LP
Sbjct: 80  GLENRQDPSQEEEGAASPSD------PGCSSSLSSCSDLSPDESPVSVYLRDLP 127


>gi|157412245 RUN and SH3 domain containing 1 isoform a [Homo
           sapiens]
          Length = 902

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 314 GVIDKQEGSQEANRAGENKDIFSCLVSGCQAQLPSCESISEKQSLVLVCQKLLP 367
           G+ ++Q+ SQE   A    D       GC + L SC  +S  +S V V  + LP
Sbjct: 80  GLENRQDPSQEEEGAASPSD------PGCSSSLSSCSDLSPDESPVSVYLRDLP 127


>gi|190341068 forkhead-associated (FHA) phosphopeptide binding
           domain 1 [Homo sapiens]
          Length = 1412

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 43  QVRTSYNFGRTFLGLDKCNACIGTSICKKFFKEEIRSDNWLASHLGLPP 91
           Q  T+ N  +    LD C AC+  S C    K+E+     L  HL + P
Sbjct: 552 QEETTENIEKLRTSLDSCQACMKISCCSHDLKKEVD----LLQHLQVSP 596


>gi|24308458 Lix1 homolog (mouse) like [Homo sapiens]
          Length = 337

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 18/48 (37%), Positives = 21/48 (43%)

Query: 253 LQEFYDAPPDQAADLAYQLLGVLESLRSNDLNYFFYFTHIDAGMFGVF 300
           LQEF+     + ADL    L V E + SN   Y  Y T      FG F
Sbjct: 104 LQEFWQMKQSRGADLKNGALVVYEMVPSNSPPYVCYVTLPGGSCFGSF 151


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.138    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,239,540
Number of Sequences: 37866
Number of extensions: 772444
Number of successful extensions: 1578
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1568
Number of HSP's gapped (non-prelim): 12
length of query: 433
length of database: 18,247,518
effective HSP length: 105
effective length of query: 328
effective length of database: 14,271,588
effective search space: 4681080864
effective search space used: 4681080864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.