Guide to the Human Genome
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Search of human proteins with 190194374

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|190194374 hypothetical protein LOC144811 [Homo sapiens]
         (430 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|190194374 hypothetical protein LOC144811 [Homo sapiens]            867   0.0  
gi|190194372 hypothetical protein LOC144811 [Homo sapiens]            867   0.0  
gi|27734891 hypothetical protein LOC286464 [Homo sapiens]              32   1.1  
gi|51558724 ADAM metallopeptidase with thrombospondin type 1 mot...    31   2.5  
gi|55743151 WD repeat domain 19 [Homo sapiens]                         31   2.5  
gi|28629871 hypothetical protein LOC140701 [Homo sapiens]              30   4.2  
gi|222446629 ret finger protein-like 4A [Homo sapiens]                 30   5.5  
gi|157168372 amyotrophic lateral sclerosis 2 (juvenile) chromoso...    30   5.5  
gi|117956409 amyotrophic lateral sclerosis 2 (juvenile) chromoso...    30   5.5  
gi|110825988 TAR RNA binding protein 1 [Homo sapiens]                  30   5.5  
gi|4758032 coatomer protein complex, subunit beta 2 (beta prime)...    29   7.2  

>gi|190194374 hypothetical protein LOC144811 [Homo sapiens]
          Length = 430

 Score =  867 bits (2241), Expect = 0.0
 Identities = 430/430 (100%), Positives = 430/430 (100%)

Query: 1   MAEAVLIDLFGLKLNSQKNCHQTLLKTLNAVQYHHAAKAKFLCIMCCSNISYERDGEQDN 60
           MAEAVLIDLFGLKLNSQKNCHQTLLKTLNAVQYHHAAKAKFLCIMCCSNISYERDGEQDN
Sbjct: 1   MAEAVLIDLFGLKLNSQKNCHQTLLKTLNAVQYHHAAKAKFLCIMCCSNISYERDGEQDN 60

Query: 61  CEIETSNGLSALLEEFEIVSCPSMAATLYTIKQKIDEKNLSSIKVIVPRHRKTLMKAFID 120
           CEIETSNGLSALLEEFEIVSCPSMAATLYTIKQKIDEKNLSSIKVIVPRHRKTLMKAFID
Sbjct: 61  CEIETSNGLSALLEEFEIVSCPSMAATLYTIKQKIDEKNLSSIKVIVPRHRKTLMKAFID 120

Query: 121 QLFTDVYNFEFEDLQVTFRGGLFKQSIEINVITAQELRGIQNEIETFLRSLPALRGKLTI 180
           QLFTDVYNFEFEDLQVTFRGGLFKQSIEINVITAQELRGIQNEIETFLRSLPALRGKLTI
Sbjct: 121 QLFTDVYNFEFEDLQVTFRGGLFKQSIEINVITAQELRGIQNEIETFLRSLPALRGKLTI 180

Query: 181 ITSSLIPDIFIHGFTTRTGGISYIPTLSSFNLFSSSKRRDPKVVVQENLRRLANAAGFNV 240
           ITSSLIPDIFIHGFTTRTGGISYIPTLSSFNLFSSSKRRDPKVVVQENLRRLANAAGFNV
Sbjct: 181 ITSSLIPDIFIHGFTTRTGGISYIPTLSSFNLFSSSKRRDPKVVVQENLRRLANAAGFNV 240

Query: 241 EKFYRIKTHHSNDIWIMGRKEPDSYDGITTNQRGVTIAALGADCIPIVFADPVKKACGVA 300
           EKFYRIKTHHSNDIWIMGRKEPDSYDGITTNQRGVTIAALGADCIPIVFADPVKKACGVA
Sbjct: 241 EKFYRIKTHHSNDIWIMGRKEPDSYDGITTNQRGVTIAALGADCIPIVFADPVKKACGVA 300

Query: 301 HAGWKGTLLGVAMATVNAMIAEYGCSLEDIVVVLGPSVGPCCFTLPRESAEAFHNLHPAC 360
           HAGWKGTLLGVAMATVNAMIAEYGCSLEDIVVVLGPSVGPCCFTLPRESAEAFHNLHPAC
Sbjct: 301 HAGWKGTLLGVAMATVNAMIAEYGCSLEDIVVVLGPSVGPCCFTLPRESAEAFHNLHPAC 360

Query: 361 VQLFDSPNPCIDIRKATRILLEQGGILPQNIQDQNQDLNLCTSCHPDKFFSHVRDGLNFG 420
           VQLFDSPNPCIDIRKATRILLEQGGILPQNIQDQNQDLNLCTSCHPDKFFSHVRDGLNFG
Sbjct: 361 VQLFDSPNPCIDIRKATRILLEQGGILPQNIQDQNQDLNLCTSCHPDKFFSHVRDGLNFG 420

Query: 421 TQIGFISIKE 430
           TQIGFISIKE
Sbjct: 421 TQIGFISIKE 430


>gi|190194372 hypothetical protein LOC144811 [Homo sapiens]
          Length = 430

 Score =  867 bits (2241), Expect = 0.0
 Identities = 430/430 (100%), Positives = 430/430 (100%)

Query: 1   MAEAVLIDLFGLKLNSQKNCHQTLLKTLNAVQYHHAAKAKFLCIMCCSNISYERDGEQDN 60
           MAEAVLIDLFGLKLNSQKNCHQTLLKTLNAVQYHHAAKAKFLCIMCCSNISYERDGEQDN
Sbjct: 1   MAEAVLIDLFGLKLNSQKNCHQTLLKTLNAVQYHHAAKAKFLCIMCCSNISYERDGEQDN 60

Query: 61  CEIETSNGLSALLEEFEIVSCPSMAATLYTIKQKIDEKNLSSIKVIVPRHRKTLMKAFID 120
           CEIETSNGLSALLEEFEIVSCPSMAATLYTIKQKIDEKNLSSIKVIVPRHRKTLMKAFID
Sbjct: 61  CEIETSNGLSALLEEFEIVSCPSMAATLYTIKQKIDEKNLSSIKVIVPRHRKTLMKAFID 120

Query: 121 QLFTDVYNFEFEDLQVTFRGGLFKQSIEINVITAQELRGIQNEIETFLRSLPALRGKLTI 180
           QLFTDVYNFEFEDLQVTFRGGLFKQSIEINVITAQELRGIQNEIETFLRSLPALRGKLTI
Sbjct: 121 QLFTDVYNFEFEDLQVTFRGGLFKQSIEINVITAQELRGIQNEIETFLRSLPALRGKLTI 180

Query: 181 ITSSLIPDIFIHGFTTRTGGISYIPTLSSFNLFSSSKRRDPKVVVQENLRRLANAAGFNV 240
           ITSSLIPDIFIHGFTTRTGGISYIPTLSSFNLFSSSKRRDPKVVVQENLRRLANAAGFNV
Sbjct: 181 ITSSLIPDIFIHGFTTRTGGISYIPTLSSFNLFSSSKRRDPKVVVQENLRRLANAAGFNV 240

Query: 241 EKFYRIKTHHSNDIWIMGRKEPDSYDGITTNQRGVTIAALGADCIPIVFADPVKKACGVA 300
           EKFYRIKTHHSNDIWIMGRKEPDSYDGITTNQRGVTIAALGADCIPIVFADPVKKACGVA
Sbjct: 241 EKFYRIKTHHSNDIWIMGRKEPDSYDGITTNQRGVTIAALGADCIPIVFADPVKKACGVA 300

Query: 301 HAGWKGTLLGVAMATVNAMIAEYGCSLEDIVVVLGPSVGPCCFTLPRESAEAFHNLHPAC 360
           HAGWKGTLLGVAMATVNAMIAEYGCSLEDIVVVLGPSVGPCCFTLPRESAEAFHNLHPAC
Sbjct: 301 HAGWKGTLLGVAMATVNAMIAEYGCSLEDIVVVLGPSVGPCCFTLPRESAEAFHNLHPAC 360

Query: 361 VQLFDSPNPCIDIRKATRILLEQGGILPQNIQDQNQDLNLCTSCHPDKFFSHVRDGLNFG 420
           VQLFDSPNPCIDIRKATRILLEQGGILPQNIQDQNQDLNLCTSCHPDKFFSHVRDGLNFG
Sbjct: 361 VQLFDSPNPCIDIRKATRILLEQGGILPQNIQDQNQDLNLCTSCHPDKFFSHVRDGLNFG 420

Query: 421 TQIGFISIKE 430
           TQIGFISIKE
Sbjct: 421 TQIGFISIKE 430


>gi|27734891 hypothetical protein LOC286464 [Homo sapiens]
          Length = 502

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 18/84 (21%)

Query: 354 HNLHPACVQLFDSPNPCID----IRKATRILLEQGGILPQNIQDQNQDLNLCTSCHPD-- 407
           +N+ P CVQ     NPC         + RILL        NI  +N    +  +CH D  
Sbjct: 297 NNMPPICVQNTPKVNPCFASSNIYSDSERILLSW-----MNINYENTRHVIWKNCHKDVI 351

Query: 408 -------KFFSHVRDGLNFGTQIG 424
                   F   + DGL F TQ+G
Sbjct: 352 PSERWIVNFDKDLSDGLVFATQLG 375


>gi|51558724 ADAM metallopeptidase with thrombospondin type 1 motif,
            12 preproprotein [Homo sapiens]
          Length = 1594

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 2/97 (2%)

Query: 211  NLFSSSKRRDPKVVVQENLRRLANAAGFNVEKFYRIKTHHSNDIWIMGR-KEPDSYDGIT 269
            N  + +K  +P +  ++    +      N   + ++   H +  WI+G   E  +  G+ 
Sbjct: 1273 NNMNQTKSSEPVLTEEDATSLITEGFLLNASNYKQLTNGHGSAHWIVGNWSECSTTCGLG 1332

Query: 270  TNQRGVTIAA-LGADCIPIVFADPVKKACGVAHAGWK 305
               R V  +  + +DC  I   DP K+      AGWK
Sbjct: 1333 AYWRRVECSTQMDSDCAAIQRPDPAKRCHLRPCAGWK 1369


>gi|55743151 WD repeat domain 19 [Homo sapiens]
          Length = 1342

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query: 134 LQVTFRGGLFKQSIEINVITAQELRGIQNEIETFLRSLPALRGKLTIITSSLIPDIFIHG 193
           L   +   LF+  +++++I + E+   Q E ET  R  PA+  K  I+  +L  D  I+G
Sbjct: 435 LHSDYAAALFEGKVQLHLIES-EILDAQEERET--RLFPAVDDKCRILCHALTSDFLIYG 491

Query: 194 FTTRTGGISY 203
             T TG + Y
Sbjct: 492 --TDTGVVQY 499


>gi|28629871 hypothetical protein LOC140701 [Homo sapiens]
          Length = 469

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 21/71 (29%), Positives = 28/71 (39%)

Query: 264 SYDGITTNQRGVTIAALGADCIPIVFADPVKKACGVAHAGWKGTLLGVAMATVNAMIAEY 323
           S  G T     +T   LGA  +   F D V  A  V    WKG ++       N  +AE 
Sbjct: 247 SVGGFTATWATMTYPELGALVLDATFDDLVPLALKVMPHSWKGLVVRTVREHFNLNVAEQ 306

Query: 324 GCSLEDIVVVL 334
            C     V++L
Sbjct: 307 LCCYPGPVLLL 317


>gi|222446629 ret finger protein-like 4A [Homo sapiens]
          Length = 287

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 8/104 (7%)

Query: 43  CIMCCSNISYERDGEQDNCEIETSNGLSALLEEFEIVSCPSMAATLYTIKQKIDEKNLSS 102
           C+ C +++  E DGE   C        S + ++ +I     + A +  IK+   E  L S
Sbjct: 31  CLQCLNSLQKEPDGEGLLCRF-----CSVVSQKDDIKPKYKLRALVSIIKEL--EPKLKS 83

Query: 103 IKVIVPRHRKTLMKAFIDQLFTDVYNFEFEDLQVTFRGGLFKQS 146
           +  + PR RK  +    D    + Y    EDL+ +FR G   Q+
Sbjct: 84  VLTMNPRMRKFQVDMTFDVDTANNYLIISEDLR-SFRSGDLSQN 126


>gi|157168372 amyotrophic lateral sclerosis 2 (juvenile) chromosome
           region, candidate 8 [Homo sapiens]
          Length = 725

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 345 LPRESAEAFHNLHPACVQLFDSPNPCIDIRKATRILLEQGGILPQNIQDQ 394
           LP + A  +H L   C+ L  SP P   + +    + ++   LP  +  Q
Sbjct: 371 LPTQQAHQYHELETPCLTLSPSPFPVSSLEEEETAVRDENCALPSRLHPQ 420


>gi|117956409 amyotrophic lateral sclerosis 2 (juvenile) chromosome
           region, candidate 8 [Homo sapiens]
          Length = 725

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 345 LPRESAEAFHNLHPACVQLFDSPNPCIDIRKATRILLEQGGILPQNIQDQ 394
           LP + A  +H L   C+ L  SP P   + +    + ++   LP  +  Q
Sbjct: 371 LPTQQAHQYHELETPCLTLSPSPFPVSSLEEEETAVRDENCALPSRLHPQ 420


>gi|110825988 TAR RNA binding protein 1 [Homo sapiens]
          Length = 1621

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 33   YHHAAKAKFLCIMCCSNISYERDGEQDNCEIETSNGLSALLEEFEIVSCPSMAATLYTIK 92
            Y      KFLC++  SN+S++         +   +    LL++ E+VS       + +++
Sbjct: 1115 YVRICAVKFLCLLDGSNMSHK---------LFIEDLAIKLLDKDELVSKSKKRYYVNSLQ 1165

Query: 93   QKIDEKNLSSIKVIVPRHRKTLMKAFIDQLF 123
             ++  +   ++ V+ PR  +  +   ID++F
Sbjct: 1166 HRVKNRVWQTLLVLFPRLDQNFLNGIIDRIF 1196


>gi|4758032 coatomer protein complex, subunit beta 2 (beta prime)
           [Homo sapiens]
          Length = 906

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 90  TIKQKIDEKNLSSIKVIVPRHRKTLMKAFIDQLFTDVYNFEFEDLQVT 137
           T +Q++D K  S   VIV  H     +  + +L  D+ N E ED+  T
Sbjct: 848 TAQQELDGKPASPTPVIVASHTANKEEKSLLELEVDLDNLELEDIDTT 895


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,730,250
Number of Sequences: 37866
Number of extensions: 613246
Number of successful extensions: 1275
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1267
Number of HSP's gapped (non-prelim): 12
length of query: 430
length of database: 18,247,518
effective HSP length: 105
effective length of query: 325
effective length of database: 14,271,588
effective search space: 4638266100
effective search space used: 4638266100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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