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Search of human proteins with 190194372
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|190194372 hypothetical protein LOC144811 [Homo sapiens]
(430 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|190194374 hypothetical protein LOC144811 [Homo sapiens] 867 0.0
gi|190194372 hypothetical protein LOC144811 [Homo sapiens] 867 0.0
gi|27734891 hypothetical protein LOC286464 [Homo sapiens] 32 1.1
gi|51558724 ADAM metallopeptidase with thrombospondin type 1 mot... 31 2.5
gi|55743151 WD repeat domain 19 [Homo sapiens] 31 2.5
gi|28629871 hypothetical protein LOC140701 [Homo sapiens] 30 4.2
gi|222446629 ret finger protein-like 4A [Homo sapiens] 30 5.5
gi|157168372 amyotrophic lateral sclerosis 2 (juvenile) chromoso... 30 5.5
gi|117956409 amyotrophic lateral sclerosis 2 (juvenile) chromoso... 30 5.5
gi|110825988 TAR RNA binding protein 1 [Homo sapiens] 30 5.5
gi|4758032 coatomer protein complex, subunit beta 2 (beta prime)... 29 7.2
>gi|190194374 hypothetical protein LOC144811 [Homo sapiens]
Length = 430
Score = 867 bits (2241), Expect = 0.0
Identities = 430/430 (100%), Positives = 430/430 (100%)
Query: 1 MAEAVLIDLFGLKLNSQKNCHQTLLKTLNAVQYHHAAKAKFLCIMCCSNISYERDGEQDN 60
MAEAVLIDLFGLKLNSQKNCHQTLLKTLNAVQYHHAAKAKFLCIMCCSNISYERDGEQDN
Sbjct: 1 MAEAVLIDLFGLKLNSQKNCHQTLLKTLNAVQYHHAAKAKFLCIMCCSNISYERDGEQDN 60
Query: 61 CEIETSNGLSALLEEFEIVSCPSMAATLYTIKQKIDEKNLSSIKVIVPRHRKTLMKAFID 120
CEIETSNGLSALLEEFEIVSCPSMAATLYTIKQKIDEKNLSSIKVIVPRHRKTLMKAFID
Sbjct: 61 CEIETSNGLSALLEEFEIVSCPSMAATLYTIKQKIDEKNLSSIKVIVPRHRKTLMKAFID 120
Query: 121 QLFTDVYNFEFEDLQVTFRGGLFKQSIEINVITAQELRGIQNEIETFLRSLPALRGKLTI 180
QLFTDVYNFEFEDLQVTFRGGLFKQSIEINVITAQELRGIQNEIETFLRSLPALRGKLTI
Sbjct: 121 QLFTDVYNFEFEDLQVTFRGGLFKQSIEINVITAQELRGIQNEIETFLRSLPALRGKLTI 180
Query: 181 ITSSLIPDIFIHGFTTRTGGISYIPTLSSFNLFSSSKRRDPKVVVQENLRRLANAAGFNV 240
ITSSLIPDIFIHGFTTRTGGISYIPTLSSFNLFSSSKRRDPKVVVQENLRRLANAAGFNV
Sbjct: 181 ITSSLIPDIFIHGFTTRTGGISYIPTLSSFNLFSSSKRRDPKVVVQENLRRLANAAGFNV 240
Query: 241 EKFYRIKTHHSNDIWIMGRKEPDSYDGITTNQRGVTIAALGADCIPIVFADPVKKACGVA 300
EKFYRIKTHHSNDIWIMGRKEPDSYDGITTNQRGVTIAALGADCIPIVFADPVKKACGVA
Sbjct: 241 EKFYRIKTHHSNDIWIMGRKEPDSYDGITTNQRGVTIAALGADCIPIVFADPVKKACGVA 300
Query: 301 HAGWKGTLLGVAMATVNAMIAEYGCSLEDIVVVLGPSVGPCCFTLPRESAEAFHNLHPAC 360
HAGWKGTLLGVAMATVNAMIAEYGCSLEDIVVVLGPSVGPCCFTLPRESAEAFHNLHPAC
Sbjct: 301 HAGWKGTLLGVAMATVNAMIAEYGCSLEDIVVVLGPSVGPCCFTLPRESAEAFHNLHPAC 360
Query: 361 VQLFDSPNPCIDIRKATRILLEQGGILPQNIQDQNQDLNLCTSCHPDKFFSHVRDGLNFG 420
VQLFDSPNPCIDIRKATRILLEQGGILPQNIQDQNQDLNLCTSCHPDKFFSHVRDGLNFG
Sbjct: 361 VQLFDSPNPCIDIRKATRILLEQGGILPQNIQDQNQDLNLCTSCHPDKFFSHVRDGLNFG 420
Query: 421 TQIGFISIKE 430
TQIGFISIKE
Sbjct: 421 TQIGFISIKE 430
>gi|190194372 hypothetical protein LOC144811 [Homo sapiens]
Length = 430
Score = 867 bits (2241), Expect = 0.0
Identities = 430/430 (100%), Positives = 430/430 (100%)
Query: 1 MAEAVLIDLFGLKLNSQKNCHQTLLKTLNAVQYHHAAKAKFLCIMCCSNISYERDGEQDN 60
MAEAVLIDLFGLKLNSQKNCHQTLLKTLNAVQYHHAAKAKFLCIMCCSNISYERDGEQDN
Sbjct: 1 MAEAVLIDLFGLKLNSQKNCHQTLLKTLNAVQYHHAAKAKFLCIMCCSNISYERDGEQDN 60
Query: 61 CEIETSNGLSALLEEFEIVSCPSMAATLYTIKQKIDEKNLSSIKVIVPRHRKTLMKAFID 120
CEIETSNGLSALLEEFEIVSCPSMAATLYTIKQKIDEKNLSSIKVIVPRHRKTLMKAFID
Sbjct: 61 CEIETSNGLSALLEEFEIVSCPSMAATLYTIKQKIDEKNLSSIKVIVPRHRKTLMKAFID 120
Query: 121 QLFTDVYNFEFEDLQVTFRGGLFKQSIEINVITAQELRGIQNEIETFLRSLPALRGKLTI 180
QLFTDVYNFEFEDLQVTFRGGLFKQSIEINVITAQELRGIQNEIETFLRSLPALRGKLTI
Sbjct: 121 QLFTDVYNFEFEDLQVTFRGGLFKQSIEINVITAQELRGIQNEIETFLRSLPALRGKLTI 180
Query: 181 ITSSLIPDIFIHGFTTRTGGISYIPTLSSFNLFSSSKRRDPKVVVQENLRRLANAAGFNV 240
ITSSLIPDIFIHGFTTRTGGISYIPTLSSFNLFSSSKRRDPKVVVQENLRRLANAAGFNV
Sbjct: 181 ITSSLIPDIFIHGFTTRTGGISYIPTLSSFNLFSSSKRRDPKVVVQENLRRLANAAGFNV 240
Query: 241 EKFYRIKTHHSNDIWIMGRKEPDSYDGITTNQRGVTIAALGADCIPIVFADPVKKACGVA 300
EKFYRIKTHHSNDIWIMGRKEPDSYDGITTNQRGVTIAALGADCIPIVFADPVKKACGVA
Sbjct: 241 EKFYRIKTHHSNDIWIMGRKEPDSYDGITTNQRGVTIAALGADCIPIVFADPVKKACGVA 300
Query: 301 HAGWKGTLLGVAMATVNAMIAEYGCSLEDIVVVLGPSVGPCCFTLPRESAEAFHNLHPAC 360
HAGWKGTLLGVAMATVNAMIAEYGCSLEDIVVVLGPSVGPCCFTLPRESAEAFHNLHPAC
Sbjct: 301 HAGWKGTLLGVAMATVNAMIAEYGCSLEDIVVVLGPSVGPCCFTLPRESAEAFHNLHPAC 360
Query: 361 VQLFDSPNPCIDIRKATRILLEQGGILPQNIQDQNQDLNLCTSCHPDKFFSHVRDGLNFG 420
VQLFDSPNPCIDIRKATRILLEQGGILPQNIQDQNQDLNLCTSCHPDKFFSHVRDGLNFG
Sbjct: 361 VQLFDSPNPCIDIRKATRILLEQGGILPQNIQDQNQDLNLCTSCHPDKFFSHVRDGLNFG 420
Query: 421 TQIGFISIKE 430
TQIGFISIKE
Sbjct: 421 TQIGFISIKE 430
>gi|27734891 hypothetical protein LOC286464 [Homo sapiens]
Length = 502
Score = 32.0 bits (71), Expect = 1.1
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 18/84 (21%)
Query: 354 HNLHPACVQLFDSPNPCID----IRKATRILLEQGGILPQNIQDQNQDLNLCTSCHPD-- 407
+N+ P CVQ NPC + RILL NI +N + +CH D
Sbjct: 297 NNMPPICVQNTPKVNPCFASSNIYSDSERILLSW-----MNINYENTRHVIWKNCHKDVI 351
Query: 408 -------KFFSHVRDGLNFGTQIG 424
F + DGL F TQ+G
Sbjct: 352 PSERWIVNFDKDLSDGLVFATQLG 375
>gi|51558724 ADAM metallopeptidase with thrombospondin type 1 motif,
12 preproprotein [Homo sapiens]
Length = 1594
Score = 30.8 bits (68), Expect = 2.5
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 211 NLFSSSKRRDPKVVVQENLRRLANAAGFNVEKFYRIKTHHSNDIWIMGR-KEPDSYDGIT 269
N + +K +P + ++ + N + ++ H + WI+G E + G+
Sbjct: 1273 NNMNQTKSSEPVLTEEDATSLITEGFLLNASNYKQLTNGHGSAHWIVGNWSECSTTCGLG 1332
Query: 270 TNQRGVTIAA-LGADCIPIVFADPVKKACGVAHAGWK 305
R V + + +DC I DP K+ AGWK
Sbjct: 1333 AYWRRVECSTQMDSDCAAIQRPDPAKRCHLRPCAGWK 1369
>gi|55743151 WD repeat domain 19 [Homo sapiens]
Length = 1342
Score = 30.8 bits (68), Expect = 2.5
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 134 LQVTFRGGLFKQSIEINVITAQELRGIQNEIETFLRSLPALRGKLTIITSSLIPDIFIHG 193
L + LF+ +++++I + E+ Q E ET R PA+ K I+ +L D I+G
Sbjct: 435 LHSDYAAALFEGKVQLHLIES-EILDAQEERET--RLFPAVDDKCRILCHALTSDFLIYG 491
Query: 194 FTTRTGGISY 203
T TG + Y
Sbjct: 492 --TDTGVVQY 499
>gi|28629871 hypothetical protein LOC140701 [Homo sapiens]
Length = 469
Score = 30.0 bits (66), Expect = 4.2
Identities = 21/71 (29%), Positives = 28/71 (39%)
Query: 264 SYDGITTNQRGVTIAALGADCIPIVFADPVKKACGVAHAGWKGTLLGVAMATVNAMIAEY 323
S G T +T LGA + F D V A V WKG ++ N +AE
Sbjct: 247 SVGGFTATWATMTYPELGALVLDATFDDLVPLALKVMPHSWKGLVVRTVREHFNLNVAEQ 306
Query: 324 GCSLEDIVVVL 334
C V++L
Sbjct: 307 LCCYPGPVLLL 317
>gi|222446629 ret finger protein-like 4A [Homo sapiens]
Length = 287
Score = 29.6 bits (65), Expect = 5.5
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 43 CIMCCSNISYERDGEQDNCEIETSNGLSALLEEFEIVSCPSMAATLYTIKQKIDEKNLSS 102
C+ C +++ E DGE C S + ++ +I + A + IK+ E L S
Sbjct: 31 CLQCLNSLQKEPDGEGLLCRF-----CSVVSQKDDIKPKYKLRALVSIIKEL--EPKLKS 83
Query: 103 IKVIVPRHRKTLMKAFIDQLFTDVYNFEFEDLQVTFRGGLFKQS 146
+ + PR RK + D + Y EDL+ +FR G Q+
Sbjct: 84 VLTMNPRMRKFQVDMTFDVDTANNYLIISEDLR-SFRSGDLSQN 126
>gi|157168372 amyotrophic lateral sclerosis 2 (juvenile) chromosome
region, candidate 8 [Homo sapiens]
Length = 725
Score = 29.6 bits (65), Expect = 5.5
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 345 LPRESAEAFHNLHPACVQLFDSPNPCIDIRKATRILLEQGGILPQNIQDQ 394
LP + A +H L C+ L SP P + + + ++ LP + Q
Sbjct: 371 LPTQQAHQYHELETPCLTLSPSPFPVSSLEEEETAVRDENCALPSRLHPQ 420
>gi|117956409 amyotrophic lateral sclerosis 2 (juvenile) chromosome
region, candidate 8 [Homo sapiens]
Length = 725
Score = 29.6 bits (65), Expect = 5.5
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 345 LPRESAEAFHNLHPACVQLFDSPNPCIDIRKATRILLEQGGILPQNIQDQ 394
LP + A +H L C+ L SP P + + + ++ LP + Q
Sbjct: 371 LPTQQAHQYHELETPCLTLSPSPFPVSSLEEEETAVRDENCALPSRLHPQ 420
>gi|110825988 TAR RNA binding protein 1 [Homo sapiens]
Length = 1621
Score = 29.6 bits (65), Expect = 5.5
Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 33 YHHAAKAKFLCIMCCSNISYERDGEQDNCEIETSNGLSALLEEFEIVSCPSMAATLYTIK 92
Y KFLC++ SN+S++ + + LL++ E+VS + +++
Sbjct: 1115 YVRICAVKFLCLLDGSNMSHK---------LFIEDLAIKLLDKDELVSKSKKRYYVNSLQ 1165
Query: 93 QKIDEKNLSSIKVIVPRHRKTLMKAFIDQLF 123
++ + ++ V+ PR + + ID++F
Sbjct: 1166 HRVKNRVWQTLLVLFPRLDQNFLNGIIDRIF 1196
>gi|4758032 coatomer protein complex, subunit beta 2 (beta prime)
[Homo sapiens]
Length = 906
Score = 29.3 bits (64), Expect = 7.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 90 TIKQKIDEKNLSSIKVIVPRHRKTLMKAFIDQLFTDVYNFEFEDLQVT 137
T +Q++D K S VIV H + + +L D+ N E ED+ T
Sbjct: 848 TAQQELDGKPASPTPVIVASHTANKEEKSLLELEVDLDNLELEDIDTT 895
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.138 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,730,250
Number of Sequences: 37866
Number of extensions: 613246
Number of successful extensions: 1275
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1267
Number of HSP's gapped (non-prelim): 12
length of query: 430
length of database: 18,247,518
effective HSP length: 105
effective length of query: 325
effective length of database: 14,271,588
effective search space: 4638266100
effective search space used: 4638266100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.